-
1
-
-
70349921972
-
Environmental factors affecting inflammatory bowel disease: Have we made progress?
-
Lakatos PL. Environmental factors affecting inflammatory bowel disease: have we made progress? Dig Dis 2009;27:215-25.
-
(2009)
Dig Dis
, vol.27
, pp. 215-225
-
-
Lakatos, P.L.1
-
2
-
-
0022970442
-
Increased intestinal permeability in patients with Crohn's disease and their relatives: A possible etiologic factor
-
Hollander D, Vadheim CM, Brettholz E, et al. Increased intestinal permeability in patients with Crohn's disease and their relatives. A possible etiologic factor. Ann Intern Med 1986;105:883-5. (Pubitemid 17201765)
-
(1986)
Annals of Internal Medicine
, vol.105
, Issue.6
, pp. 883-885
-
-
Hollander, D.1
Vadheim, C.M.2
Brettholz, E.3
-
3
-
-
79957924860
-
Our unindicted coconspirators: Human metabolism from a microbial perspective
-
Goodman AL, Gordon JI. Our unindicted coconspirators: human metabolism from a microbial perspective. Cell Metab 2010;12:111-16.
-
(2010)
Cell Metab
, vol.12
, pp. 111-116
-
-
Goodman, A.L.1
Gordon, J.I.2
-
4
-
-
0037043658
-
Inflammatory bowel disease
-
DOI 10.1056/NEJMra020831
-
Podolsky DK. Inflammatory bowel disease. N Engl J Med 2002;347:417-29. (Pubitemid 34851835)
-
(2002)
New England Journal of Medicine
, vol.347
, Issue.6
, pp. 417-429
-
-
Podolsky, D.K.1
-
5
-
-
33847381116
-
The fundamental basis of inflammatory bowel disease
-
DOI 10.1172/JCI30587
-
Strober W, Fuss I, Mannon P. The fundamental basis of inflammatory bowel disease. J Clin Invest 2007;117:514-21. (Pubitemid 46348505)
-
(2007)
Journal of Clinical Investigation
, vol.117
, Issue.3
, pp. 514-521
-
-
Strober, W.1
Fuss, I.2
Mannon, P.3
-
6
-
-
38649115342
-
Microbial Influences in Inflammatory Bowel Diseases
-
DOI 10.1053/j.gastro.2007.11.059, PII S0016508507021579
-
Sartor RB. Microbial influences in inflammatory bowel diseases. Gastroenterology 2008;134:577-94. (Pubitemid 351173057)
-
(2008)
Gastroenterology
, vol.134
, Issue.2
, pp. 577-594
-
-
Sartor, R.B.1
-
7
-
-
70349427086
-
Toll-like receptor 4-mediated regulation of spontaneous Helicobacter-dependent colitis in IL-10-deficient mice
-
Matharu KS, Mizoguchi E, Cotoner CA, et al. Toll-like receptor 4-mediated regulation of spontaneous Helicobacter-dependent colitis in IL-10-deficient mice. Gastroenterology 2009;137:1380-90.e1-3.
-
(2009)
Gastroenterology
, vol.137
-
-
Matharu, K.S.1
Mizoguchi, E.2
Cotoner, C.A.3
-
8
-
-
0032412057
-
Resident enteric bacteria are necessary for development of spontaneous colitis and immune system activation in interleukin-10-deficient mice
-
Sellon RK, Tonkonogy S, Schultz M, et al. Resident enteric bacteria are necessary for development of spontaneous colitis and immune system activation in interleukin-10-deficient mice. Infect Immun 1998;66:5224-31. (Pubitemid 29044613)
-
(1998)
Infection and Immunity
, vol.66
, Issue.11
, pp. 5224-5231
-
-
Sellon, R.K.1
Tonkonogy, S.2
Schultz, M.3
Dieleman, L.A.4
Grenther, W.5
Balish, E.6
Rennick, D.M.7
Sartor, R.B.8
-
9
-
-
0031923916
-
Rapid development of severe hyperplastic gastritis with gastric epithelial dedifferentiation in Helicobacter felis-infected IL-10(-/-) mice
-
Berg DJ, Lynch NA, Lynch RG, et al. Rapid development of severe hyperplastic gastritis with gastric epithelial dedifferentiation in Helicobacter felis-infected IL-10(-/-) mice. Am J Pathol 1998;152:1377-86. (Pubitemid 28221890)
-
(1998)
American Journal of Pathology
, vol.152
, Issue.5
, pp. 1377-1386
-
-
Berg, D.J.1
Lynch, N.A.2
Lynch, R.G.3
Lauricella, D.M.4
-
10
-
-
78649829431
-
Colitis and intestinal inflammation in IL10(-/-) mice results from IL-13Ralpha2-mediated attenuation of IL-13 activity
-
Wilson MS, Ramalingam TR, Rivollier A, et al. Colitis and intestinal inflammation in IL10(-/-) mice results from IL-13Ralpha2-mediated attenuation of IL-13 activity. Gastroenterology 2011;140:254-64.
-
(2011)
Gastroenterology
, vol.140
, pp. 254-264
-
-
Wilson, M.S.1
Ramalingam, T.R.2
Rivollier, A.3
-
11
-
-
36849000520
-
Deletion of TLR5 results in spontaneous colitis in mice
-
DOI 10.1172/JCI33084
-
Vijay-Kumar M, Sanders CJ, Taylor RT, et al. Deletion of TLR5 results in spontaneous colitis in mice. J Clin Invest 2007;117:3909-21. (Pubitemid 350224100)
-
(2007)
Journal of Clinical Investigation
, vol.117
, Issue.12
, pp. 3909-3921
-
-
Vijay-Kumar, M.1
Sanders, C.J.2
Taylor, R.T.3
Kumar, A.4
Aitken, J.D.5
Sitaraman, S.V.6
Neish, A.S.7
Uematsu, S.8
Akira, S.9
Williams, I.R.10
Gewirtz, A.T.11
-
12
-
-
77149142027
-
TLR5 is not required for flagellin-mediated exacerbation of DSS colitis
-
Ivison SM, Himmel ME, Hardenberg G, et al. TLR5 is not required for flagellin-mediated exacerbation of DSS colitis. Inflamm Bowel Dis 2010;16:401-9.
-
(2010)
Inflamm Bowel Dis
, vol.16
, pp. 401-409
-
-
Ivison, S.M.1
Himmel, M.E.2
Hardenberg, G.3
-
13
-
-
77950250064
-
Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5
-
Vijay-Kumar M, Aitken JD, Carvalho FA, et al. Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5. Science 2010;328:228-31.
-
(2010)
Science
, vol.328
, pp. 228-231
-
-
Vijay-Kumar, M.1
Aitken, J.D.2
Carvalho, F.A.3
-
14
-
-
78649545020
-
TLR5 activation induces secretory interleukin-1 receptor antagonist (sIL-1Ra) and reduces inflammasome-associated tissue damage
-
Carvalho FA, Aitken JD, Gewirtz AT, et al. TLR5 activation induces secretory interleukin-1 receptor antagonist (sIL-1Ra) and reduces inflammasome-associated tissue damage. Mucosal Immunol 2011;4:102-11.
-
(2011)
Mucosal Immunol
, vol.4
, pp. 102-111
-
-
Carvalho, F.A.1
Aitken, J.D.2
Gewirtz, A.T.3
-
15
-
-
40149103278
-
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
-
DOI 10.1038/nmeth.1184, PII NMETH.1184
-
Hamady M, Walker JJ, Harris JK, et al. Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 2008;5:235-7. (Pubitemid 351325646)
-
(2008)
Nature Methods
, vol.5
, Issue.3
, pp. 235-237
-
-
Hamady, M.1
Walker, J.J.2
Harris, J.K.3
Gold, N.J.4
Knight, R.5
-
16
-
-
69549112742
-
Accurate determination of microbial diversity from 454 pyrosequencing data
-
Quince C, Lanzen A, Curtis TP, et al. Accurate determination of microbial diversity from 454 pyrosequencing data. Nat Methods 2009;6:639-41.
-
(2009)
Nat Methods
, vol.6
, pp. 639-641
-
-
Quince, C.1
Lanzen, A.2
Curtis, T.P.3
-
17
-
-
77956304094
-
Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
-
Reeder J, Knight R. Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions. Nat Methods 2010;7:668-9.
-
(2010)
Nat Methods
, vol.7
, pp. 668-669
-
-
Reeder, J.1
Knight, R.2
-
18
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010;7:335-6.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
-
19
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010;26:2460-1.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
20
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DOI 10.1128/AEM.03006-05
-
DeSantis TZ, Hugenholtz P, Larsen N, et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 2006;72:5069-72. (Pubitemid 44078840)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.7
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
21
-
-
75249107844
-
PyNAST: A flexible tool for aligning sequences to a template alignment
-
Caporaso JG, Bittinger K, Bushman FD, et al. PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 2010;26:266-7.
-
(2010)
Bioinformatics
, vol.26
, pp. 266-267
-
-
Caporaso, J.G.1
Bittinger, K.2
Bushman, F.D.3
-
22
-
-
67649327176
-
FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix
-
Price MN, Dehal PS, Arkin AP. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol 2009;26:1641-50.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 1641-1650
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
23
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
DOI 10.1128/AEM.71.12.8228-8235.2005
-
Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 2005;71:8228-35. (Pubitemid 41803949)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.12
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
24
-
-
33750530394
-
IL-23 plays a key role in Helicobacter hepaticus-induced T cell-dependent colitis
-
DOI 10.1084/jem.20061082
-
Kullberg MC, Jankovic D, Feng CG, et al. IL-23 plays a key role in Helicobacter hepaticus-induced T cell-dependent colitis. J Exp Med 2006;203:2485-94. (Pubitemid 44664618)
-
(2006)
Journal of Experimental Medicine
, vol.203
, Issue.11
, pp. 2485-2494
-
-
Kullberg, M.C.1
Jankovic, D.2
Feng, C.G.3
Hue, S.4
Gorelick, P.L.5
McKenzie, B.S.6
Cua, D.J.7
Powrie, F.8
Cheever, A.W.9
Maloy, K.J.10
Sher, A.11
-
25
-
-
34547638394
-
Activation of toll-like receptor 3 protects against DSS-induced acute colitis
-
DOI 10.1002/ibd.20142
-
Vijay-Kumar M, Wu H, Aitken J, et al. Activation of toll-like receptor 3 protects against DSS-induced acute colitis. Inflamm Bowel Dis 2007;13:856-64. (Pubitemid 47203863)
-
(2007)
Inflammatory Bowel Diseases
, vol.13
, Issue.7
, pp. 856-864
-
-
Vijay-Kumar, M.1
Wu, H.2
Aitken, J.3
Kolachala, V.L.4
Neish, A.5
Sitaraman, S.V.6
Gewirtz, A.T.7
-
26
-
-
28844444159
-
Targeted deletion of metalloproteinase 9 attenuates experimental colitis in mice: Central role of epithelial-derived MMP
-
DOI 10.1053/j.gastro.2005.09.017, PII S0016508505018019
-
Castaneda FE, Walia B, Vijay-Kumar M, et al. Targeted deletion of metalloproteinase 9 attenuates experimental colitis in mice: central role of epithelial-derived MMP. Gastroenterology 2005;129:1991-2008. (Pubitemid 41772976)
-
(2005)
Gastroenterology
, vol.129
, Issue.6
, pp. 1991-2008
-
-
Castaneda, F.E.1
Walia, B.2
Vijay-Kumar, M.3
Patel, N.R.4
Roser, S.5
Kolachala, V.L.6
Rojas, M.7
Wang, L.8
Oprea, G.9
Garg, P.10
Gewirtz, A.T.11
Roman, J.12
Merlin, D.13
Sitaraman, S.V.14
-
27
-
-
73649137855
-
Latent cytomegalovirus infection exacerbates experimental colitis
-
Onyeagocha C, Hossain MS, Kumar A, et al. Latent cytomegalovirus infection exacerbates experimental colitis. Am J Pathol 2009;175:2034-42.
-
(2009)
Am J Pathol
, vol.175
, pp. 2034-2042
-
-
Onyeagocha, C.1
Hossain, M.S.2
Kumar, A.3
-
28
-
-
33747769371
-
Involvement of toll-like receptor 5 in the recognition of flagellated bacteria
-
DOI 10.1073/pnas.0605200103
-
Feuillet V, Medjane S, Mondor I, et al. Involvement of Toll-like receptor 5 in the recognition of flagellated bacteria. Proc Natl Acad Sci USA 2006;103:12487-92. (Pubitemid 44274883)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.33
, pp. 12487-12492
-
-
Feuillet, V.1
Medjane, S.2
Mondor, I.3
Demaria, O.4
Pagni, P.P.5
Galan, J.E.6
Flavell, R.A.7
Alexopoulou, L.8
-
29
-
-
0034081113
-
Identification of cdtB homologues and cytolethal distending toxin activity in enterohepatic Helicobacter spp.
-
Chien CC, Taylor NS, Ge Z, et al. Identification of cdtB homologues and cytolethal distending toxin activity in enterohepatic Helicobacter spp. J Med Microbiol 2000;49:525-34. (Pubitemid 30347590)
-
(2000)
Journal of Medical Microbiology
, vol.49
, Issue.6
, pp. 525-534
-
-
Chien, C.-C.1
Taylor, N.S.2
Ge, Z.3
Schauer, D.B.4
Young, V.B.5
Fox, J.G.6
-
30
-
-
34548399000
-
Host-Mediated Inflammation Disrupts the Intestinal Microbiota and Promotes the Overgrowth of Enterobacteriaceae (DOI:10.1016/j.chom.2007.06.010)
-
DOI 10.1016/j.chom.2007.08.002, PII S1931312807001941
-
Lupp C, Robertson ML, Wickham ME, et al. Host-mediated inflammation disrupts the intestinal microbiota and promotes the overgrowth of Enterobacteriaceae. Cell Host Microbe 2007;2:204. (Pubitemid 47355207)
-
(2007)
Cell Host and Microbe
, vol.2
, Issue.3
, pp. 204
-
-
Lupp, C.1
Robertson, M.L.2
Wickham, M.E.3
Sekirov, I.4
Champion, O.L.5
Gaynor, E.C.6
Finlay, B.7
-
31
-
-
79952478107
-
Microbial ecology of the murine gut associated with the development of dextran sodium sulfate-induced colitis
-
Nagalingam NA, Kao JY, Young VB. Microbial ecology of the murine gut associated with the development of dextran sodium sulfate-induced colitis. Inflamm Bowel Dis 2011;17:917-26.
-
(2011)
Inflamm Bowel Dis
, vol.17
, pp. 917-926
-
-
Nagalingam, N.A.1
Kao, J.Y.2
Young, V.B.3
-
32
-
-
78649605448
-
TLR5 or NLRC4 is necessary and sufficient for promotion of humoral immunity by flagellin
-
Vijay-Kumar M, Carvalho FA, Aitken JD, et al. TLR5 or NLRC4 is necessary and sufficient for promotion of humoral immunity by flagellin. Eur J Immunol 2010;40:3528-34.
-
(2010)
Eur J Immunol
, vol.40
, pp. 3528-3534
-
-
Vijay-Kumar, M.1
Carvalho, F.A.2
Aitken, J.D.3
-
33
-
-
77955346494
-
Pathogenic and protective roles of MyD88 in leukocytes and epithelial cells in mouse models of inflammatory bowel disease
-
Asquith MJ, Boulard O, Powrie F, et al. Pathogenic and protective roles of MyD88 in leukocytes and epithelial cells in mouse models of inflammatory bowel disease. Gastroenterology 2010;139:519-29.
-
(2010)
Gastroenterology
, vol.139
, pp. 519-529
-
-
Asquith, M.J.1
Boulard, O.2
Powrie, F.3
-
34
-
-
33747114270
-
Role of Toll-like Receptors in Spontaneous Commensal-Dependent Colitis
-
DOI 10.1016/j.immuni.2006.06.010, PII S107476130600344X
-
Rakoff-Nahoum S, Hao L, Medzhitov R. Role of toll-like receptors in spontaneous commensal-dependent colitis. Immunity 2006;25:319-29. (Pubitemid 44224143)
-
(2006)
Immunity
, vol.25
, Issue.2
, pp. 319-329
-
-
Rakoff-Nahoum, S.1
Hao, L.2
Medzhitov, R.3
-
35
-
-
77949571201
-
Anti-IL-1 molecules: New comers and new indications
-
Molto A, Olive A. Anti-IL-1 molecules: new comers and new indications. Joint Bone Spine 2010;77:102-7.
-
(2010)
Joint Bone Spine
, vol.77
, pp. 102-107
-
-
Molto, A.1
Olive, A.2
-
36
-
-
40749097296
-
Toll-like receptor 5-deficient mice have dysregulated intestinal gene expression and nonspecific resistance to Salmonella-induced typhoid-like disease
-
DOI 10.1128/IAI.01491-07
-
Vijay-Kumar M, Aitken JD, Kumar A, et al. Toll-like receptor 5-deficient mice have dysregulated intestinal gene expression and nonspecific resistance to Salmonella-induced typhoid-like disease. Infect Immun 2008;76:1276-81. (Pubitemid 351428091)
-
(2008)
Infection and Immunity
, vol.76
, Issue.3
, pp. 1276-1281
-
-
Vijay-Kumar, M.1
Aitken, J.D.2
Kumar, A.3
Neish, A.S.4
Uematsu, S.5
Akira, S.6
Gewirtz, A.T.7
-
37
-
-
79955527226
-
TLR5-deficient mice lack basal inflammatory and metabolic defects but exhibit impaired CD4 T cell responses to a flagellated pathogen
-
Letran SE, Lee SJ, Atif SM, et al. TLR5-deficient mice lack basal inflammatory and metabolic defects but exhibit impaired CD4 T cell responses to a flagellated pathogen. J Immunol 2011;186:5406-12.
-
(2011)
J Immunol
, vol.186
, pp. 5406-5412
-
-
Letran, S.E.1
Lee, S.J.2
Atif, S.M.3
-
38
-
-
77950627242
-
IL-1 pathways in inflammation and human diseases
-
Gabay C, Lamacchia C, Palmer G. IL-1 pathways in inflammation and human diseases. Nat Rev Rheumatol 2010;6:232-41.
-
(2010)
Nat Rev Rheumatol
, vol.6
, pp. 232-241
-
-
Gabay, C.1
Lamacchia, C.2
Palmer, G.3
-
39
-
-
77952296338
-
Interleukin-1beta (IL-1beta) processing pathway
-
Weber A, Wasiliew P, Kracht M. Interleukin-1beta (IL-1beta) processing pathway. Sci Signal 2010;3:cm2.
-
(2010)
Sci Signal
, vol.3
-
-
Weber, A.1
Wasiliew, P.2
Kracht, M.3
-
41
-
-
77952303410
-
The NLRP3 inflammasome functions as a negative regulator of tumorigenesis during colitis-associated cancer
-
Allen IC, TeKippe EM, Woodford RM, et al. The NLRP3 inflammasome functions as a negative regulator of tumorigenesis during colitis-associated cancer. J Exp Med 2010;207:1045-56.
-
(2010)
J Exp Med
, vol.207
, pp. 1045-1056
-
-
Allen, I.C.1
TeKippe, E.M.2
Woodford, R.M.3
-
42
-
-
84857063866
-
Loss of TLR5 predisposes mice to TLR4-, Ipaf- And helicobacter- independent colitis in response to neutralization of IL-10
-
Carvalho FA, Aitken JD, Vijay-Kumar M, et al. Loss of TLR5 predisposes mice to TLR4-, Ipaf- and helicobacter-independent colitis in response to neutralization of IL-10. Gastroenterology 2010;138:S-260-1.
-
(2010)
Gastroenterology
, vol.138
-
-
Carvalho, F.A.1
Aitken, J.D.2
Vijay-Kumar, M.3
-
43
-
-
77950002937
-
The NLRP3 inflammasome protects against loss of epithelial integrity and mortality during experimental colitis
-
Zaki MH, Boyd KL, Vogel P, et al. The NLRP3 inflammasome protects against loss of epithelial integrity and mortality during experimental colitis. Immunity 2010;32:379-91.
-
(2010)
Immunity
, vol.32
, pp. 379-391
-
-
Zaki, M.H.1
Boyd, K.L.2
Vogel, P.3
-
44
-
-
77956128040
-
Colitis induced in mice with dextran sulfate sodium (DSS) is mediated by the NLRP3 inflammasome
-
Bauer C, Duewell P, Mayer C, et al. Colitis induced in mice with dextran sulfate sodium (DSS) is mediated by the NLRP3 inflammasome. Gut 2010;59:1192-9.
-
(2010)
Gut
, vol.59
, pp. 1192-1199
-
-
Bauer, C.1
Duewell, P.2
Mayer, C.3
-
45
-
-
13244292161
-
Nod2-dependent regulation of innate and adaptive immunity in the intestinal tract
-
DOI 10.1126/science.1104911
-
Kobayashi KS, Chamaillard M, Ogura Y, et al. Nod2-dependent regulation of innate and adaptive immunity in the intestinal tract. Science 2005;307:731-4. (Pubitemid 40194644)
-
(2005)
Science
, vol.307
, Issue.5710
, pp. 731-734
-
-
Kobayashi, K.S.1
Chamaillard, M.2
Ogura, Y.3
Henegariu, O.4
Inohara, N.5
Nunez, G.6
Flavell, R.A.7
-
46
-
-
58649090901
-
Targeted epithelial tight junction dysfunction causes immune activation and contributes to development of experimental colitis
-
Su L, Shen L, Clayburgh DR, et al. Targeted epithelial tight junction dysfunction causes immune activation and contributes to development of experimental colitis. Gastroenterology 2009;136:551-63.
-
(2009)
Gastroenterology
, vol.136
, pp. 551-563
-
-
Su, L.1
Shen, L.2
Clayburgh, D.R.3
|