Actinoallomurus radicium sp. nov., isolated from the roots of two plant species

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 2, 2012, Pages 295-298

  Matsumoto, Atsuko ^a   Fukuda, Asami ^a   Inahashi, Yuki ^a   Omura, Satoshi ^a   Takahashi, Yoko ^a  

^a KITASATO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

DIAMINO ACID; DIAMINOPIMELIC ACID; LYSINE; MENAQUINONE; PEPTIDOGLYCAN; RNA 16S;

ACTINOALLOMURUS RADICIUM; ACTINOBACTERIA; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CELL WALL; DNA DNA HYBRIDIZATION; GENE SEQUENCE; JAPAN; NUCLEOTIDE SEQUENCE; PLANT ROOT; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CELL WALL; DIAMINOPIMELIC ACID; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; JAPAN; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PEPTIDOGLYCAN; PLANT ROOTS; PLANTS; POACEAE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; VITAMIN K 2;

EID: 84856994691     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.029181-0     Document Type: Article

References (22)

1. Becker, B., Lechevalier, M. P. & Lechevalier, H. A. (1965). Chemical position of cell-wall preparations from strains of various form-genera of aerobic actinomycetes. Appl Microbiol 13, 236-243.
2. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
3. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
4. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the Nocardin Strain. Int J Syst Bacteriol 24, 54-63.
7. Inahashi, Y., Matsumoto, A., Danbara, H., Omura, S. & Takahashi, Y. (2010). Phytohabitans suffuscus gen. nov., sp. nov., an actinomycete of the family Micromonosporaceae isolated from plant roots. Int J Syst Evol Microbiol 60, 2652-2658.
8. Indananda, C., Thamchaipenet, A., Matsumoto, A., Inahashi, Y., Duangmal, K. & Takahashi, Y. (2011). Actinoallomurus oryzae sp. nov., an endophytic actinomycete isolated from roots of a Thai jasmine rice plant. Int J Syst Evol Microbiol 61, 737-741.
9. Kawamoto, I., Oka, T. & Nara, T. (1981). Cell wall composition of Micromonospora olivoasterospora, Micromonospora sagamiensis, and related organisms. J Bacteriol 146, 527-534.
10. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
11. Matsumoto, A., Yamada, M., Omura, S. & Takahashi, Y. (2008). Microterricola viridarii gen. nov., sp. nov., a new member of the family Microbacteriaceae. Int J Syst Evol Microbiol 58, 1019-1023.
12. Minnikin, D. E., Patel, P. V., Alshamaony, L. & Goodfellow, M. (1977). Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27, 104-117.
13. Pridham, T. G. & Gottlieb, D. (1948). The utilization of carbon compounds by some Actinomycetales as an aid for species determination. J Bacteriol 56, 107-114.
14. Saito, H. & Miura, K. I. (1963). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619-629.
15. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
16. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromato-graphy. FEMS Microbiol Lett 25, 125-128.
17. Tamura, T., Ishida, Y., Nozawa, Y., Otoguro, M. & Suzuki, K. (2009). Transfer of Actinomadura spadix Nonomura and Ohara 1971 to Actinoallomurus spadix gen. nov., comb. nov., and description of Actinoallomurus amamiensis sp. nov., Actinoallomurus caesius sp. nov., Actinoallomurus coprocola sp. nov., Actinoallomurus fulvus sp. nov., Actinoallomurus iriomotensis sp. nov., Actinoallomurus luridus sp. nov., Actinoallomurus purpureus sp. nov. and Actinoallomurus yoronensis sp. nov. Int J Syst Evol Microbiol 59, 1867-1874.
18. Thamchaipenet, A., Indananda, C., Bunyoo, C., Duangmal, K., Matsumoto, A. & Takahashi, Y. (2010). Actinoallomurus acaciae sp. nov., an endophytic actinomycete isolated from Acacia auriculiformis A. Cunn. ex Benth. Int J Syst Evol Microbiol 60, 554-559.
19. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
20. Tomiyasu, I. (1982). Mycolic acid composition and thermally adaptative changes in Nocardia asteroides. J Bacteriol 151, 828-837.
21. Uchida, K. & Aida, K. (1977). Acyl type of bacterial cell wall: its simple identification by colorimetric method. J Gen Appl Microbiol 23, 249-260.
22. Wayne, L. G., Brenner, D. J., Colwell, R.R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. (1987). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.