Protein subcellular localization prediction with WoLF PSORT

Series on Advances in Bioinformatics and Computational Biology

Volumn 3, Issue , 2006, Pages 39-48

  Hortona, Paul ^a   Park, Keun Joon ^a,c   Obayashi, Takeshi ^b,d,e   Nakai, Kenta ^c  

^a NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

^c TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

^d CHIBA UNIVERSITY   (Japan)

^e Core Research for Evolutional Science and Technology ^*  (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ANIMAL PROTEINS; PLANT PROTEINS; PROTEIN SUBCELLULAR LOCALIZATION; PROTEIN SUBCELLULAR LOCALIZATION PREDICTION; SEQUENCE DATA; SWISS-PROT;

AMINO ACIDS; ANIMALS; ERRORS; FUNGI; PROTEINS;

BIOINFORMATICS;

EID: 84856980739     PISSN: 17516404     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (13)

1. M. Ashburner, C. A. Ball, J. A. Blake, D. Botstein, H. Butler, J. M. Cherry, A. P. Davis, K. Dolinski, S. S. Dwight, J. T. Eppig, M. A. Harris, D. P. Hill, L. Issel-Tarver, A. Kasarskis, S. Lewis, J. C. Matese, J. E. Richardson, M. Ringwald, G. M. Rubin, and G. Sherlock. Gene ontology: tool for the unification of biology. Nature Genetics, 25(1):25-29, 2000. (Pubitemid 30257031)
2. Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Kenta Nakai, and Satoru Miyano. Extensive feature detection of N-terminal protein sorting signals. Bioinformatics, 18:298-305, 2002. (Pubitemid 34183107)
3. B. Boeckmann, A. Bairoch, R. Apweiler, M. Blatter, A. Estreicher, E. Gasteiger, M. J. Martin, K. Michoud, C. O'Donovan, I. Phan, S. Pilbout, and M. Schneider. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Research, 31:365-370, 2003. (Pubitemid 36157284)
4. M.G. Claros and P. Vincens. Computational method to predict mitochondrially imported proteins and their targeting sequences. European Journal of Biochemistry, 241:779-786, 1996. (Pubitemid 26379380)
5. Richard O. Duda and Peter E. Hart. Pattern Classification and Scene Analysis. John Wiley & Sons, New York, 1973.
6. Paul Horton, Yuri Mukai, and Kenta Nakai. Protein localization prediction. In Limsoon Wong, editor, The Practical Bioinformatician, pages 193-215. World Scientific, 5 Toh Tuck Link, Singapore 596224, 2004.
7. Paul Horton and Kenta Nakai. Better prediction of protein cellular localization sites with the k nearest neighbors classifier. In Proceeding of the Fifth International Conference on Intelligent Systems for Molecular Biology, pages 147-152, Menlo Park, 1997. AAAI Press.
8. José M. Mingot, Eduardo A. Espeso, Eliecer Díez, and Miguel A. Peñalva. Ambient pH signaling regulates nuclear localization of the aspergillus nidulans PacC transcription factor. Molecular and Cellular Biology, 21(5):1688-1699, March 2001. (Pubitemid 32156389)
9. Kenta Nakai and Minoru Kanehisa. A knowledge base for predicting protein localization sites in eukaryotic cells. Genomics, 14:897-911, 1992. (Pubitemid 23053027)
10. Henrik Nielsen. Machine learning approaches for the prediction of signal peptides and other protein sorting signals. Protein Engineering, 12(1):3-9, 1999. (Pubitemid 29050535)
11. Henrik Nielsen, Jacob Engelbrecht, Søren Brunak, and Gunnar von Heijne. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Engineering, 10:1-6, 1997.
12. K. Nishikawa and T. Ooi. Correlation of the amino acid composition of a protein to its structural and biological characters. J. Biochem., 91(5):1821-1824, 1982.
13. Gunnar von Heijne. A new method for predicting signal sequence cleavage sites. Nucleic Acids Research, 14:4683-4690, 1986.