Genetic diversity of six arable plants in relation to their Red List status

Biodiversity and Conservation

Volumn 21, Issue 3, 2012, Pages 745-761

  Brutting C ^a   Wesche, K ^b   Meyer, S ^c   Hensen, I ^a  

^a MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

^b SENCKENBERG MUSEUM OF NATURAL HISTORY GÖRLITZ   (Germany)

^c UNIVERSITY OF GÖTTINGEN   (Germany)

Author keywords

Adonis aestivalis; Anagallis arvensis; Anagallis foemina; Arable plants; Bupleurum rotundifolium; Central Germany; Conservation genetics; Consolida regalis; Nigella arvensis; RAPD

Indexed keywords

AGRICULTURAL INTENSIFICATION; ARABLE FARMING; CONSERVATION GENETICS; ENDANGERED SPECIES; ENVIRONMENTAL MONITORING; FERTILIZER APPLICATION; GENETIC ANALYSIS; GENETIC DIFFERENTIATION; GENETIC STRUCTURE; HERB; HERBICIDE; LAND USE CHANGE; POLYMORPHISM; POPULATION DECLINE; POPULATION STRUCTURE; RED LIST; VULNERABILITY;

GERMANY;

ADONIS AESTIVALIS; ANAGALLIS; ANAGALLIS ARVENSIS; ANAGALLIS ARVENSIS FOEMINA; BUPLEURUM; BUPLEURUM ROTUNDIFOLIUM; CONSOLIDA REGALIS; NIGELLA; NIGELLA ARVENSIS;

EID: 84856970788     PISSN: 09603115     EISSN: 15729710     Source Type: Journal    
DOI: 10.1007/s10531-011-0212-z     Document Type: Article

References (93)

1. Aarssen LW (2000) Why are most selfers annuals? A new hypothesis for the fitness benefit of selfing. Oikos 89: 606-612.
2. Aguilar R, Ashworth L, Galetto L, Aizen MA (2006) Plant reproductive susceptibility to habitat fragmentation: review and synthesis through a meta-analysis. Ecol Lett 9: 968-980.
3. Akerreta S, Cavero RY, López V, Calvo MI (2007) Analyzing factors that influence the folk use and phytonomy of 18 medicinal plants in Navarra. J Ethnobiol Ethnomed 3: 1-18.
4. Angeloni F, Ouborg NJ, Leimu R (2011) Meta-analysis on the association of population size and life history with inbreeding depression in plants. Biol Conserv 144: 35-43.
5. Baessler C, Klotz S (2006) Effects of changes in agricultural land-use on landscape structure and arable weed vegetation over the last 50 years. Agr Ecosyst Environ 115: 43-50.
6. Baessler C, Klotz S, Durka W (2010) Temporal changes and spatial determinants of plant species diversity and genetic variation. Long Term Ecol Res 5: 279-297.
7. Barroso J, Navarrete L, Sánchez del Arco MJ, Fernandez-Quintanilla C, Lutman PJW, Perry NH, Hull RI (2006) Dispersal of Avena fatua and Avena sterilis patches by natural dissemination, soil tillage and combine harvesters. Weed Res 46: 118-128.
8. Bittkau C, Comes HP (2005) Evolutionary processes in a continental island system: molecular phylogeography of the Aegean Nigella arvensis alliance (Ranunculaceae) inferred from chloroplast DNA. Mol Ecol 14: 4065-4083.
9. Björklund M, Bergek S, Ranta E, Kaitala V (2010) The effect of local population dynamics on patterns of isolation by distance. Ecol Inform 5: 167-172.
10. Bonnin I, Huguet T, Gherardi M, Prosperi JM, Olivieri I (1996) High level of polymorphism and spatial structure in a selfing plant species, Medicago truncatula (Leguminosae), shown using RAPD markers. Am J Bot 83: 843-855.
11. Bundesamt für Naturschutz (2011) FloraWeb: Daten und Informationen zu Wildpflanzen und zur Vegetation Deutschlands. http://www.floraweb.de. Accessed15 Jan 2011.
12. Charlesworth D (2003) Effects of inbreeding on the genetic diversity of populations. Phil Trans R Soc Lond B 358: 1051-1070.
13. Cole CT (2003) Genetic variation in rare and common plants. Annu Rev Ecol Evol Syst 34: 213-237.
14. Comes HP, Abbott RJ (2000) Random amplified polymorphic DNA (RAPD) and quantitative trait analyses across a major phylogeographical break in the Mediterranean ragwort Senecio gallicus Vill (Asteraceae). Mol Ecol 9: 61-76.
15. Dallimer M, Tinch D, Acs S, Hanley N, Southall HR, Gaston KJ, Armsworth PR (2009) 100 years of change: examining agricultural trends, habitat change and stakeholder perceptions through the 20th century. J Appl Ecol 46: 334-343.
16. Délye C, Clément JAJ, Pernin F, Chauvel B, Le Corre V (2010) High gene flow promotes the genetic homogeneity of arable weed populations at the landscape level. Basic Appl Ecol 11: 504-512.
17. Development Core Team R (2006) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna.
18. Diekötter T, Walther-Hellwig K, Conradi M, Suter M, Frankl R (2006) Effects of landscape elements on the distribution of the rare bumblebee species Bombus muscorum in an agricultural landscape. Biodivers Conserv 15: 57-68.
19. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-15.
20. Ellstrand NC, Elam DR (1993) Population genetic consequences of small population size: implications for plant conservation. Annu Rev Ecol Syst 24: 217-242.
21. Esfeld K, Hensen I, Wesche K, Jakob SS, Tischew S, Blattner FR (2008) Molecular data indicate multiple independent colonizations of former lignite mining areas in Eastern Germany by Epipactis palustris (Orchidaceae). Biodivers Conserv 17: 2441-2453.
22. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
23. Fahrig L (2007) Non-optimal animal movement in human-altered landscapes. Funct Ecol 21: 1003-1015.
24. Ferguson ME, Newbury HJ, Maxted N, Ford-Lloyd BV, Robertson LD (1998) Population genetic structure in Lens taxa revealed by isozyme and RAPD analysis. Genet Resour Crop Evol 45: 549-559.
25. Frank D, Herdam H, Jage H, Klotz S, Ratey F, Wegener U, Weinert E, Westhus W (1992) Rote Liste der Farn und Blütenpflanzen des Landes Sachsen-Anhalt. Ber Landesamt Umweltschutz Sachsen-Anhalt 1: 44-63.
26. Fried G, Norton L, Reboud X (2008) Environmental and management factors determining weed species composition and diversity in France. Agr Ecosyst Environ 128: 68-76.
27. Fried G, Petit S, Dessaint F, Reboud X (2009) Arable weed decline in Northern France: crop edges as refugia for weed conservation? Biol Conserv 142: 238-243.
28. Geiger F, Bengtsson J, Berendse F, Weisser WW, Emmerson M, Morales MB, Ceryngier P, Liira J, Tscharntke T, Winqvist C, Eggers S, Bommarco R, Pärt T, Bretagnolle V, Plantegenest M, Clement LW, Dennis C, Palmer C, Oñate JJ, Guerrero I, Hawro V, Aavik T, Thies C, Flohre A, Hänke S, Fischer C, Goedhart PW, Inchausti P (2010) Persistent negative effects of pesticides on biodiversity and biological control potential on European farmland. Basic Appl Ecol 11: 97-105.
29. Gibbs PE, Talavera S (2001) Breeding system studies with three species of Anagallis (Primulaceae): self-incompatibility and reduced female fertility in A. monelli L. Ann Bot Lond 88: 139-144.
30. Gitzendanner MA, Soltis PS (2000) Patterns of genetic variation in rare and widespread plant congeners. Am J Bot 87: 783-792.
31. Hamrick JL, Godt MJW (1996) Effects of life history traits on genetic diversity in plant species. Phil Trans R Soc Lond B 351: 1291-1298.
32. Development Core Team R (2006) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna.
33. Hawes C, Squire GR, Hallett PD, Watson CA, Young M (2010) Arable plant communities as indicators of farming practice. Agric Ecosyst Environ 138: 17-26.
34. Hendrickx F, Maelfait JP, van Wingerden W, Schweiger O, Speelmans M, Aviron S, Augenstein I, Billeter R, Bailey D, Bukacek R, Burel F, Diekötter TIM, Dirksen J, Herzog F, Liira J, Roubalova M, Vandomme V, Bugter ROB (2007) How landscape structure, land-use intensity and habitat diversity affect components of total arthropod diversity in agricultural landscapes. J Appl Ecol 44: 340-351.
35. Hensen I, Wesche K (2006) Relationships between population size, genetic diversity and fitness components in the rare plant Dictamnus albus in Central Germany. Biodivers Conserv 15: 2249-2261.
36. Hilbig W (2007) Die Haftdolden-Gesellschaft der Kalkäcker in Thüringen-Erinnerungen an einstige Blütenpracht. Landschaftspfl u Natursch in Thüringen 44: 76-83.
37. Hill JP, Lord EM, Shaw RG (1992) Morphological and growth rate differences among outcrossing and self-pollinating races of Arenaria uniflora (Caryophyllaceae). J Evol Biol 5: 559-573.
38. Hulina N (2005) List of threatened weeds in the continental part of Croatia and their possible conservation. Agric Conspec Sci 70: 37-42.
39. Hans J (2010) Genetic structure of arable weed species, Adonis aestivalis and Consolida regalis, in relation to landscape structure. Dissertation, Carl von Ossietzky University, Oldenburg.
40. Jenkins DG, Carey M, Czerniewska J, Fletcher J, Hether T, Jones A, Knight S, Knox J, Long T, Mannino M, McGuire M, Riffle A, Segelsky S, Shappell L, Sterner A, Strickler T, Tursi R (2010) A meta-analysis of isolation by distance: relic or reference standard for landscape genetics? Ecography 33: 315-320.
41. Kästner A, Jäger EJ, Schubert R (2001) Handbuch der Segetalpflanzen Mitteleuropas. Springer, Wien.
42. Katzir N, Portnoy V, Tzuri G, Joel DM, Castejón-Muñoz M (1996) Use of random amplified polymorphic DNA (RAPD) markers in the study of the parasitic weed Orobanche. Theor Appl Genet 93: 367-372.
43. Kleijn D, Kohler F, Baldi A, Batary P, Concepcion ED, Clough Y, Diaz M, Gabriel D, Holzschuh A, Knop E, Kovacs A, Marshall EJP, Tscharntke T, Verhulst J (2009) On the relationship between farmland biodiversity and land-use intensity in Europe. Proc R Soc B 276: 903-909.
44. Korneck D, Schnittler M, Vollmer I (1996) Rote Liste der Farn und Blütenpflanzen (Pteridophyta et Spermatophyta) Deutschlands. Schriftenreihe Vegetationsk 28: 21-187.
45. Leimu R, Mutikainen PIA, Koricheva J, Fischer M (2006) How general are positive relationships between plant population size, fitness and genetic variation? J Ecol 94: 942-952.
46. Leimu R, Vergeer P, Angeloni F, Ouborg NJ (2010) Habitat fragmentation, climate change and inbreeding in plants. Ann NY Acad Sci 1195: 84-98.
47. Lososová Z, Chytrý M, Kühn I, Hájek O, Horáková V, Pyšek P, Tichý L (2006) Patterns of plant traits in annual vegetation of man-made habitats in central Europe. Perspect Plant Ecol 8: 69-81.
48. Lososová Z, Chytrý M, Kühn I (2008) Plant attributes determining the regional abundance of weeds on central European arable land. J Biogeogr 35: 177-187.
49. Loveless MD, Hamrick JL (1984) Ecological determinants of genetic structure in plant populations. Annu Rev Ecol Syst 15: 65-95.
50. Ludwig G, Haupt H, Gruttke H, Binot-Hafke M (2005) Methodische Weiterentwicklung der Roten Listen gefährdeter Tiere, Pflanzen und Pilze in Deutschland-Eine Übersicht. Natur Landsch 80: 257-265.
51. Mable BK, Adam A (2007) Patterns of genetic diversity in outcrossing and selfing populations of Arabidopsis lyrata. Mol Ecol 16: 3565-3580.
52. Marsden-Jones EM, Weiss PE (1938) The essential differences between Anagallis arvensis Linn and Anagallis foemina Mill. Proc Linn Soc Lon 150: 146-155.
53. Marshall EJP, Brain P (1999) The horizontal movement of seeds in arable soil by different soil cultivation methods. J Appl Ecol 36: 443-454.
54. Matthies D, Bräuer I, Maibom W, Tscharntke T (2004) Population size and the risk of local extinction: empirical evidence from rare plants. Oikos 105: 481-488.
55. IUCN (2010) Guidelines for using the IUCN Red List categories and criteria. http://intranet.iucn.org/webfiles/doc/SSC/RedList/RedListGuidelines.pdf. Accessed 15 Dec 2010.
56. Mengistu LW, Mueller-Warrant GW, Barker RE (2000) Genetic diversity of Poa annua in western Oregon grass seed crops. Theor Appl Genet 101: 70-79.
57. Meyer S, Leuschner C, van Elsen T (2008) Sanctuaries for the segetal vegetation in Germany-inventory and new impulses by the project "Biodiversity in agricultural landscapes". J Plant Dis Protect Special Issue 21: 363-368.
58. McCune B, Mefford MJ (2006) PC-ORD 5. 0. Multivariate analysis of ecological data. MjM Software, Gleneden Beach.
59. Müller-Schärer H, Fischer M (2001) Genetic structure of the annual weed Senecio vulgaris in relation to habitat type and population size. Mol Ecol 10: 17-28.
60. Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76: 5269-5273.
61. Nunney L (2002) The effective size of annual plant populations: the interaction of a seed bank with fluctuating population size in maintaining genetic variation. Am Nat 160: 195-204.
62. Nybom H (2004) Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol Ecol 13: 1143-1155.
63. Nybom H, Bartish I (2000) Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants. Perspect Plant Ecol 3: 93-114.
64. Oostermeijer JGB, Luijten SH, den Nijs JCM (2003) Integrating demographic and genetic approaches in plant conservation. Biol Conserv 113: 389-398.
65. Pauw A (2007) Collapse of a pollination web in small conservation areas. Ecology 88: 1759-1769.
66. Peakall ROD, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6: 288-295.
67. Potts GR, Ewald JA, Aebischer NJ (2010a) Long-term changes in the flora of the cereal ecosystem on the Sussex Downs, England, focusing on the years 1968-2005. J Appl Ecol 47: 215-226.
68. Potts SG, Biesmeijer JC, Kremen C, Neumann P, Schweiger O, Kunin WE (2010b) Global pollinator declines: trends, impacts and drivers. Trends Ecol Evol 25: 345-353.
69. Roback PJ, Askins RA (2005) Judicious use of multiple hypothesis tests. Conserv Biol 19: 261-267.
70. Meyer S, Krause B, Wesche K, Leuschner C (2010) Changes in Central German arable plant communities over the last 50 years: a semi-quantitative study. In: Proceedings of 15th EWRS symposium (Kapsvoár, Hungary), pp 135-136.
71. Routley MB, Mavraganis K, Eckert CG (1999) Effect of population size on the mating system in a self-compatible, autogamous plant, Aquilegia canadensis (Ranunculaceae). Heredity 82: 518-528.
72. Schiebold S, Hensen I, Wesche K, Röser M (2009) Extensive clonality of the endemic Calamagrostis pseudopurpurea Gerstl. ex OR Heine in central Germany revealed by RAPD markers. Plant Biol 11: 473-482.
73. Schmidt T, Arens P, Smulders MJM, Billeter R, Liira J, Augenstein I, Durka W (2009) Effects of landscape structure on genetic diversity of Geum urbanum L. populations in agricultural landscapes. Flora 204: 549-559.
74. Schoen DJ, Brown AH (1991) Intraspecific variation in population gene diversity and effective population size correlates with the mating system in plants. Proc Natl Acad Sci USA 88: 4494-4497.
75. Spielman D, Brook BW, Frankham R (2004) Most species are not driven to extinction before genetic factors impact them. Proc Natl Acad Sci USA 101: 15261-15264.
76. Rothmaler WB, Jäger E, Werner K (2002) Exkursionsflora von Deutschland, Bd. 4 Gefäßpflanzen: Kritischer Band. Spektrum, Heidelberg.
77. Sudupak M, Akkaya M, Kence A (2002) Analysis of genetic relationships among perennial and annual Cicer species growing in Turkey using RAPD markers. Theor Appl Genet 105: 1220-1228.
78. Sutcliffe OL, Kay QON (2000) Changes in the arable flora of central southern England since the 1960s. Biol Conserv 93: 1-8.
79. Svensson R, Wigren M (1986) History and biology of Consolida regalis in Sweden. Sven Bot Tidskr 80: 31-53.
80. Storkey J, Meyer S, Still KS, Leuschner C (2011) The impact of agricultural intensification and land-use change on the European arable flora. Proc R Soc Biol Sci. doi: 10. 1098/rspb. 2011. 1686.
81. van Kleunen M, Fischer M, Johnson SD (2007) Reproductive assurance through self-fertilization does not vary with population size in the alien invasive plant Datura stramonium. Oikos 116: 1400-1412.
82. Vieira EA, Castro CM, de Oliveira AC, de Carvalho FIF, Dejalma Zimmer PD, Martins LF (2004) Genetic structure of annual ryegrass (Lolium multiflorum) populations estimated by RAPD. Sci Agric 61: 407-413.
83. Walker KJ, Preston CD, Boon CR (2009) Fifty years of change in an area of intensive agriculture: plant trait responses to habitat modification and conservation, Bedfordshire, England. Biodivers Conserv 18: 3597-3613.
84. Walz U (2008) Monitoring of landscape change and functions in Saxony (Eastern Germany)-methods and indicators. Ecol Indic 8: 807-817.
85. Wegrzynek B, Nowak T (2010) Rare and endangered segetal weed species in the Silesian Upland (s Poland) recorded in the last twenty years. Plant Breed Seed Sci 61: 75-84.
86. Welk E (2002) Arealkundliche Analyse und Bewertung der Schutzrelevanz seltener Gefäßpflanzen Deutschlands. Schriftenreihe Vegetationsk 37: 1-337.
87. Westhus W, Zündorf HJ (1993) Rote Liste der Farn und Blütenpflanzen (Pteridophyta et Spermatophyta) Thüringens. Naturschutzreport 5: 134-152.
88. Whitlock MC (2000) Fixation of new alleles and the extinction of small populations: drift load, beneficial alleles, and sexual selection. Evolution 54: 1855-1861.
89. Willi Y, van Buskirk J, Fischer M (2005) A threefold genetic allee effect: population size affects cross-compatibility, inbreeding depression and drift load in the self-incompatible Ranunculus reptans. Genetics 169: 2255-2265.
90. Willi Y, van Buskirk J, Hoffmann AA (2006) Limits to the adaptive potential of small populations. Annu Rev Ecol Evol Syst 37: 433.
91. Wright S (1943) Isolation by distance. Genetics 28: 114-138.
92. Young A, Boyle T, Brown T (1996) The population genetic consequences of habitat fragmentation for plants. Trends Ecol Evol 11: 413-418.
93. Young J, Watt A, Nowicki P, Alard D, Clitherow J, Henle K, Johnson R, Laczko E, McCracken D, Matouch S, Niemela J, Richards C (2005) Towards sustainable land use: identifying and managing the conflicts between human activities and biodiversity conservation in Europe. Biodivers Conserv 14: 1641-1661.