A principled approach to distributed multiscale computing, from formalization to execution

Proceedings - 7th IEEE International Conference on e-Science Workshops, eScienceW 2011

Volumn , Issue , 2011, Pages 97-104

  Borgdorff, Joris ^a   Lorenz, Eric ^a   Hoekstra, Alfons G ^a   Falcone, Jean Luc ^b   Chopard, Bastien ^b  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

^b UNIVERSITY OF GENEVA   (Switzerland)

Author keywords

coupling template; coupling topology; distributed multiscale computing; MML; multiscale modeling; submodel execution loop; task graph

Indexed keywords

MML; MULTI-SCALE MODELING; MULTISCALES; SUBMODELS; TASK GRAPH;

SURFACE MORPHOLOGY;

EID: 84856962849     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/eScienceW.2011.9     Document Type: Conference Paper

References (32)

1. P. M. A. Sloot and A. G. Hoekstra, "Multi-scale modelling in computational biomedicine," Briefings in bioinformatics, vol. 11, no. 1, pp. 142-152, Jan. 2010.
2. W. E, B. Engquist, X. Li, W. Ren, and E. Vanden-Eijnden, "The heterogeneous multiscale method: A review," Communications in Computational Physics, vol. 2, no. 3, pp. 367-450, Jun. 2007.
3. A. G. Hoekstra, A. Caiazzo, E. Lorenz, and J.-L. Falcone, "Complex automata: multi-scale modeling with coupled cellular automata," in Simulating Complex Systems by Cellular Automata. Springer-Verlag Berlin / Heidelberg, 2010, pp. 29-57.
4. A. G. Hoekstra, E. Lorenz, J.-L. Falcone, and B. Chopard, "Toward a Complex Automata Formalism for MultiScale Modeling," International Journal for Multiscale Computational Engineering, vol. 5, no. 6, pp. 491-502, 2007. (Pubitemid 351239119)
5. B. Chopard, J.-L. Falcone, A. G. Hoekstra, and J. Borgdorff, "A Framework for Multiscale and Multiscience Modeling and Numerical Simulations," in LNCS 6714. Springer-Verlag Berlin / Heidelberg, 2011, pp. 2-8.
6. The MAPPER project, http://www.mapper-project.eu/, 2010.
7. A. Yang and W. Marquardt, "An ontological conceptualization of multiscale models," Computers & Chemical Engineering, no. 33, pp. 822-837, 2009.
8. J.-L. Falcone, B. Chopard, and A. G. Hoekstra, "MML: towards a Multiscale Modeling Language," Procedia Computer Science, vol. 1, no. 1, pp. 819-826, 2010.
9. G. D. Ingram, I. T. Cameron, and K. M. Hangos, "Classification and analysis of integrating frameworks in multiscale modelling," Chemical engineering science, vol. 59, pp. 2171-2187, 2004.
10. A. Caiazzo, J.-L. Falcone, B. Chopard, and A. G. Hoekstra, "Asymptotic analysis of Complex Automata models for reaction-diffusion systems," Applied Numerical Mathematics, vol. 59, no. 8, pp. 2023-2034, Aug. 2009.
11. W. E, B. Engquist, and Z. Huang, "Heterogeneous multiscale method: A general methodology for multiscale modeling,"Physical Review B, vol. 67, no. 9, p. 092101, Mar. 2003.
12. G. D. Ingram and I. T. Cameron, "Challenges in Multiscale Modelling and its Application to Granulation Systems," Developments in Chemical Engineering and Mineral Processing, vol. 12, no. 3-4, pp. 293-308, 2004.
13. W. P. Stevens, G. J. Myers, and L. L. Constantine, "Structured design," IBM Systems Journal, vol. 13, no. 2, pp. 115-139, 1974.
14. B. A. Allan, R. Armstrong et al., "A Component Architecture for High-Performance Scientific Computing," Intl. J. High-Performance Computing Applications, vol. 20, no. 2, pp. 163-202, Jul. 2006.
15. F. Liu, M. Sosonkina, and R. Bramly, "A New Approach: Component-Based Multi-physics Coupling through CCALISI,"in ICCSA 2010, Part II, LNCS 6017. Springer-Verlag Berlin / Heidelberg, 2010, pp. 503-518.
16. T. Goodale, G. Allen et al., "The Cactus Framework and Toolkit: Design and Applications," in LNCS 2565. Springer-Verlag Berlin / Heidelberg, Apr. 2003, pp. 197-227.
17. H. El-Rewini, H. Ali, and T. Lewis, "Task scheduling in multiprocessing systems," Computer, vol. 28, no. 12, pp. 27-37, Dec. 1995.
18. Y.-K. Kwok and I. Ahmad, "Benchmarking and Comparison of the Task Graph Scheduling Algorithms," Journal of Parallel and Distributed Computing, vol. 59, no. 3, pp. 381-422, Dec. 1999. (Pubitemid 129592990)
19. H. Casanova, F. Desprez, and F. Suter, "On cluster resource allocation for multiple parallel task graphs," Journal of Parallel and Distributed Computing, vol. 70, pp. 1193-1203, 2010.
20. J. Hegewald, M. Krafczyk, J. Tölke, and A. G. Hoekstra, "An agent-based coupling platform for complex automata,"in LNCS 5102, M. Bubak et al., Eds., 2008, pp. 227-233.
21. J. Hegewald, "The Multiscale Coupling Library and Environment (MUSCLE)," http://muscle.berlios.de/, jan 2010.
22. D. P. Mitchell and M. J. Merritt, "A distributed algorithm for deadlock detection and resolution," in PODC '84. Vancouver, Canada: ACM, 1984, pp. 282-284.
23. JADE, "Java agent development framework," http://jade.tilab. com/, 2011.
24. V. Kravtsov, A. Schuster, D. Carmeli, K. Kurowski, and W. Dubitzky, "Grid-enabling complex system applications with QosCosGrid: An architectural perspective," in GCA '08, Las Vegas, Nevada, USA, 2008, pp. 168-174.
25. D. J. W. Evans, P. V. Lawford et al., "The application of multiscale modelling to the process of development and prevention of stenosis in a stented coronary artery," Philosophical Transactions of the Royal Society A, vol. 366, pp. 3343-3360, 2008.
26. A. Caiazzo, D. J. W. Evans et al., "A Complex Automata approach for In-stent Restenosis: two-dimensional multiscale modeling and simulations," Journal of Computational Science, vol. 2, no. 1, pp. 9-17, Mar. 2011.
27. J. L. Suter and P. V. Coveney, "Computer simulation study of the materials properties of intercalated and exfoliated poly(ethylene)glycol clay nanocomposites," Soft Matter, vol. 5, no. 11, pp. 2239-2251, Apr. 2009.
28. H. Tahir, A. G. Hoekstra et al., "Multiscale simulations of the dynamics of in-stent restenosis: impact of stent deployment and design," Interface Focus, vol. 1, no. 3, pp. 365-373, Apr. 2011.
29. S. Plimpton, "Fast parallel algorithms for short-range molecular dynamics," Journal of Computational Physics, vol. 117, pp. 1-19, 1995.
30. S. J. Clark, M. D. Segall et al., "First principles methods using CASTEP," Zeitschrift für Kristallographie, vol. 220, no. 5-6-2005, pp. 567-570, May 2005.
31. A. G. Hoekstra, J.-L. Falcone, and A. Caiazzo, "Multi-scale Modeling with Cellular Automata: The Complex Automata Approach," in LNCS 5191. Springer-Verlag Berlin / Heidelberg, 2008, pp. 192-199.
32. A. G. Hoekstra, E. Lorenz, J.-L. Falcone, and B. Chopard, "Towards a complex automata framework for multi-scale modeling: formalism and the scale separation map," in ICCS 2007, Part I, LNCS 4487, Y. Shi et al., Eds., 2007, pp. 922-930. (Pubitemid 350269737)