-
1
-
-
75549086595
-
REBASE-a database for DNA restriction and modification: Enzymes, genes and genomes
-
Roberts, R. J., Vincze, T., Posfai, J. and Macelis, D. (2010) REBASE-a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res., 38, D234-D236.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Roberts, R.J.1
Vincze, T.2
Posfai, J.3
MacElis, D.4
-
2
-
-
0002598414
-
Type II restriction endonucleases
-
Linn, S, M., Lloyd, R. S. and Roberts, R. J. (eds) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Roberts, R. J. and Halford, S. E. (1993) Type II restriction endonucleases. In Linn, S. M., Lloyd, R. S. and Roberts, R. J. (eds), Nucleases. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 35-88.
-
(1993)
Nucleases
, pp. 35-88
-
-
Roberts, R.J.1
Halford, S.E.2
-
3
-
-
0028932881
-
Structure and function of restriction endonucleases
-
Aggarwal, A. K. (1995) Structure and function of restriction endonucleases. Curr. Opin. Struct. Biol., 5, 11-19.
-
(1995)
Curr. Opin. Struct. Biol
, vol.5
, pp. 11-19
-
-
Aggarwal, A.K.1
-
4
-
-
17044403057
-
Type II restriction endonucleases: Structure and mechanism
-
Pingoud, A., Fuxreiter, M., Pingoud, V. and Wende, W. (2005) Type II restriction endonucleases: structure and mechanism. Cell. Mol. Life Sci., 62, 685-707.
-
(2005)
Cell. Mol. Life Sci
, vol.62
, pp. 685-707
-
-
Pingoud, A.1
Fuxreiter, M.2
Pingoud, V.3
Wende, W.4
-
5
-
-
0028934112
-
Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions
-
Vipond, I. B. and Halford, S. E. (1995) Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions. Biochemistry, 34, 1113-1119.
-
(1995)
Biochemistry
, vol.34
, pp. 1113-1119
-
-
Vipond, I.B.1
Halford, S.E.2
-
6
-
-
0025797325
-
Class-IIS restriction enzymes-a review
-
Szybalski, W., Kim, S. C., Hasan, N. and Podhajska, A. J. (1991) Class-IIS restriction enzymes-a review. Gene, 100, 13-26.
-
(1991)
Gene
, vol.100
, pp. 13-26
-
-
Szybalski, W.1
Kim, S.C.2
Hasan, N.3
Podhajska, A.J.4
-
7
-
-
0344011130
-
Diversity of Type II restriction endonucleases that require two DNA recognition sites
-
Mucke, M., Kruger, D. H. and Reuter, M. (2003) Diversity of Type II restriction endonucleases that require two DNA recognition sites. Nucleic Acids Res., 31, 6079-6084.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6079-6084
-
-
Mucke, M.1
Kruger, D.H.2
Reuter, M.3
-
8
-
-
16644399511
-
Type IIE and IIF restriction endonucleases interacting with two recognition sites on DNA
-
Kirsanova, O. V., Baskunov, V. B. and Gromova, E. S. (2004) Type IIE and IIF restriction endonucleases interacting with two recognition sites on DNA. Mol. Biol., 38, 886-900.
-
(2004)
Mol. Biol
, vol.38
, pp. 886-900
-
-
Kirsanova, O.V.1
Baskunov, V.B.2
Gromova, E.S.3
-
9
-
-
14244262078
-
Structure and function of the tetrameric restriction enzymes
-
Pingoud, A. (ed.) Springer-Verlag, Berlin
-
Siksnys, V., Grazulis, S. and Huber, R. (2004) Structure and function of the tetrameric restriction enzymes. In Pingoud, A. (ed.), Nucleic Acids and Molecular Biology, Restriction Endonucleases, Vol. 14. Springer-Verlag, Berlin, pp. 237-259.
-
(2004)
Nucleic Acids and Molecular Biology, Restriction Endonucleases
, vol.14
, pp. 237-259
-
-
Siksnys, V.1
Grazulis, S.2
Huber, R.3
-
10
-
-
3042785825
-
One recognition sequence, seven restriction enzymes, five reaction mechanisms
-
Gowers, D. M., Bellamy, S. R. W. and Halford, S. E. (2004) One recognition sequence, seven restriction enzymes, five reaction mechanisms. Nucleic Acids Res., 32, 3469-3479.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 3469-3479
-
-
Gowers, D.M.1
Bellamy, S.R.W.2
Halford, S.E.3
-
11
-
-
77953255142
-
The Type IIB restriction endonucleases
-
Marshall, J. J. T. and Halford, S. E. (2010) The Type IIB restriction endonucleases. Biochem. Soc. Trans., 38, 410-416.
-
(2010)
Biochem. Soc. Trans
, vol.38
, pp. 410-416
-
-
Marshall, J.J.T.1
Halford, S.E.2
-
12
-
-
78651319695
-
Natural and engineered nicking endonucleases-from cleavage mechanism to engineering of strand-specificity
-
Chan, S. H., Stoddard, B. L. and Xu, S. Y. (2011) Natural and engineered nicking endonucleases-from cleavage mechanism to engineering of strand-specificity. Nucleic Acids Res., 39, 1-18.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 1-18
-
-
Chan, S.H.1
Stoddard, B.L.2
Xu, S.Y.3
-
13
-
-
0037389511
-
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
-
Roberts, R. J., Belfort, M., Bestor, T., Bhagwat, A. S., Bickle, T. A., Bitinaite, J., Blumenthal, R. M., Degtyarev, S., Dryden, D. T. F., Dybvig, K. et al. (2003) A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res., 31, 1805-1812.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1805-1812
-
-
Roberts, R.J.1
Belfort, M.2
Bestor, T.3
Bhagwat, A.S.4
Bickle, T.A.5
Bitinaite, J.6
Blumenthal, R.M.7
Degtyarev, S.8
Dryden, D.T.F.9
Dybvig, K.10
-
15
-
-
0019768975
-
New restriction endonucleases from Flavobacterium okeanokoites (FokI) and Micrococcus luteus (MluI)
-
Sugisaki, H. and Kanazawa, S. (1981) New restriction endonucleases from Flavobacterium okeanokoites (FokI) and Micrococcus luteus (MluI). Gene, 16, 73-78.
-
(1981)
Gene
, vol.16
, pp. 73-78
-
-
Sugisaki, H.1
Kanazawa, S.2
-
16
-
-
0024450479
-
Purification and characterization of the FokI restriction endonuclease
-
Kaczorowski, T., Skowron, P. and Podhajska, A. J. (1989) Purification and characterization of the FokI restriction endonuclease. Gene, 80, 209-216.
-
(1989)
Gene
, vol.80
, pp. 209-216
-
-
Kaczorowski, T.1
Skowron, P.2
Podhajska, A.J.3
-
17
-
-
0035946911
-
FokI requires two specific DNA sites for cleavage
-
Vanamee, E. S., Santagata, S. and Aggarwal, A. K. (2001) FokI requires two specific DNA sites for cleavage. J. Mol. Biol., 309, 69-78.
-
(2001)
J. Mol. Biol
, vol.309
, pp. 69-78
-
-
Vanamee, E.S.1
Santagata, S.2
Aggarwal, A.K.3
-
18
-
-
0026511244
-
Functional domains in Fok i restriction endonuclease
-
Li, L., Wu, L. P. and Chandrasegaran, S. (1992) Functional domains in Fok I restriction endonuclease. Proc. Natl Acad. Sci. USA, 89, 4275-4279.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 4275-4279
-
-
Li, L.1
Wu, L.P.2
Chandrasegaran, S.3
-
19
-
-
0028091729
-
Insertion and deletion mutants of FokI restriction endonuclease
-
Kim, Y. G., Li, L. and Chandrasegaran, S. (1994) Insertion and deletion mutants of FokI restriction endonuclease. J. Biol. Chem., 269, 31978-31982.
-
(1994)
J. Biol. Chem
, vol.269
, pp. 31978-31982
-
-
Kim, Y.G.1
Li, L.2
Chandrasegaran, S.3
-
20
-
-
0030790696
-
Structure of the multimodular endonuclease FokI bound to DNA
-
Wah, D. A., Hirsch, J. A., Dorner, L. F., Schildkraut, I. and Aggarwal, A. K. (1997) Structure of the multimodular endonuclease FokI bound to DNA. Nature, 388, 97-100.
-
(1997)
Nature
, vol.388
, pp. 97-100
-
-
Wah, D.A.1
Hirsch, J.A.2
Dorner, L.F.3
Schildkraut, I.4
Aggarwal, A.K.5
-
21
-
-
0028180206
-
A novel class of FokI restriction endonuclease mutants that cleave hemi-methylated substrates
-
Waugh, D. S. and Sauer, R. T. (1994) A novel class of FokI restriction endonuclease mutants that cleave hemi-methylated substrates. J. Biol. Chem., 269, 12298-12303.
-
(1994)
J. Biol. Chem
, vol.269
, pp. 12298-12303
-
-
Waugh, D.S.1
Sauer, R.T.2
-
22
-
-
0027429846
-
Single amino acid substitutions uncouple the DNA binding and strand scission activities of Fok i endonuclease
-
Waugh, D. S. and Sauer, R. T. (1993) Single amino acid substitutions uncouple the DNA binding and strand scission activities of Fok I endonuclease. Proc. Natl Acad. Sci. USA, 90, 9596-9600.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 9596-9600
-
-
Waugh, D.S.1
Sauer, R.T.2
-
23
-
-
0027973975
-
DNA binding mode of class-IIS restriction endonuclease FokI revealed by DNA footprinting analysis
-
Yonezawa, A. and Sugiura, Y. (1994) DNA binding mode of class-IIS restriction endonuclease FokI revealed by DNA footprinting analysis. Biochim. Biophys. Acta, 1219, 369-379.
-
(1994)
Biochim. Biophys. Acta
, vol.1219
, pp. 369-379
-
-
Yonezawa, A.1
Sugiura, Y.2
-
24
-
-
77952308521
-
A novel mechanism for the scission of double-stranded DNA: BfiI cuts both 30-50 and 50-30 strands by rotating a single active site
-
Sasnauskas, G., Zakrys, L., Zaremba, M., Cosstick, R., Gaynor, J. W., Halford, S. E. and Siksnys, V. (2010) A novel mechanism for the scission of double-stranded DNA: BfiI cuts both 30-50 and 50-30 strands by rotating a single active site. Nucleic Acids Res., 38, 2399-2410.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 2399-2410
-
-
Sasnauskas, G.1
Zakrys, L.2
Zaremba, M.3
Cosstick, R.4
Gaynor, J.W.5
Halford, S.E.6
Siksnys, V.7
-
25
-
-
0032169674
-
Structure of FokI has implications for DNA cleavage
-
Wah, D. A., Bitinaite, J., Schildkraut, I. and Aggarwal, A. K. (1998) Structure of FokI has implications for DNA cleavage. Proc. Natl Acad. Sci. USA, 95, 10564-10569.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 10564-10569
-
-
Wah, D.A.1
Bitinaite, J.2
Schildkraut, I.3
Aggarwal, A.K.4
-
26
-
-
0032167717
-
FokI dimerization is required for DNA cleavage
-
Bitinaite, J., Wah, D. A., Aggarwal, A. K. and Schildkraut, I. (1998) FokI dimerization is required for DNA cleavage. Proc. Natl Acad. Sci. USA, 95, 10570-10575.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 10570-10575
-
-
Bitinaite, J.1
Wah, D.A.2
Aggarwal, A.K.3
Schildkraut, I.4
-
27
-
-
33645522837
-
Protein assembly and DNA looping by the FokI restriction endonuclease
-
Catto, L. E., Ganguly, S., Milsom, S. E., Welsh, A. J. and Halford, S. E. (2006) Protein assembly and DNA looping by the FokI restriction endonuclease. Nucleic Acids Res., 34, 1711.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1711
-
-
Catto, L.E.1
Ganguly, S.2
Milsom, S.E.3
Welsh, A.J.4
Halford, S.E.5
-
28
-
-
41849085964
-
Dynamics and consequences of DNA looping by the FokI restriction endonuclease
-
Catto, L. E., Bellamy, S. R. W., Retter, S. E. and Halford, S. E. (2008) Dynamics and consequences of DNA looping by the FokI restriction endonuclease. Nucleic Acids Res., 36, 2073-2081.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 2073-2081
-
-
Catto, L.E.1
Bellamy, S.R.W.2
Retter, S.E.3
Halford, S.E.4
-
29
-
-
65549139378
-
Targeting individual subunits of the FokI restriction endonuclease to specific DNA strands
-
Sanders, K. L., Catto, L. E., Bellamy, S. R. W. and Halford, S. E. (2009) Targeting individual subunits of the FokI restriction endonuclease to specific DNA strands. Nucleic Acids Res., 37, 2105-2115.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 2105-2115
-
-
Sanders, K.L.1
Catto, L.E.2
Bellamy, S.R.W.3
Halford, S.E.4
-
30
-
-
0037040271
-
Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA
-
Bath, A. J., Milsom, S. E., Gormley, N. A. and Halford, S. E. (2002) Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA. J. Biol. Chem., 277, 4024-4033.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 4024-4033
-
-
Bath, A.J.1
Milsom, S.E.2
Gormley, N.A.3
Halford, S.E.4
-
31
-
-
0019182556
-
The EcoRI restriction endonuclease with bacteriophage lambda DNA
-
Halford, S. E., Johnson, N. P. and Grinsted, J. (1980) The EcoRI restriction endonuclease with bacteriophage lambda DNA. Kinetic studies. Biochem. J., 191, 581-592.
-
(1980)
Kinetic Studies. Biochem. J
, vol.191
, pp. 581-592
-
-
Halford, S.E.1
Johnson, N.P.2
Grinsted, J.3
-
32
-
-
79957957333
-
-
11th edn Invitrogen, Carlsbad, California
-
Johnson, I. and Spence, M. T. Z. (2010) Molecular Probes Handbook, a Guide to Fluorescent Probes and Labeling Technologies, 11th edn. Invitrogen, Carlsbad, California.
-
(2010)
Molecular Probes Handbook, A Guide to Fluorescent Probes and Labeling Technologies
-
-
Johnson, I.1
Spence, M.T.Z.2
-
33
-
-
0017795758
-
Fluorescence energy transfer as a spectroscopic ruler
-
Stryer, L. (1978) Fluorescence energy transfer as a spectroscopic ruler. Annu. Rev. Biochem., 47, 819-846.
-
(1978)
Annu. Rev. Biochem
, vol.47
, pp. 819-846
-
-
Stryer, L.1
-
36
-
-
0035957061
-
Binding and recognition of GATATC target sequences by the EcoRV restriction endonuclease: A study using fluorescent oligonucleotides and fluorescence polarization
-
Reid, S. L., Parry, D., Liu, H. H. and Connolly, B. A. (2001) Binding and recognition of GATATC target sequences by the EcoRV restriction endonuclease: A study using fluorescent oligonucleotides and fluorescence polarization. Biochemistry, 40, 2484-2494.
-
(2001)
Biochemistry
, vol.40
, pp. 2484-2494
-
-
Reid, S.L.1
Parry, D.2
Liu, H.H.3
Connolly, B.A.4
-
37
-
-
70349258664
-
Differences between Ca2+ and Mg2+ in DNA binding and release by the SfiI restriction endonuclease: Implications for DNA looping
-
Bellamy, S. R., Kovacheva, Y. S., Zulkipli, I. H. and Halford, S. E. (2009) Differences between Ca2+ and Mg2+ in DNA binding and release by the SfiI restriction endonuclease: implications for DNA looping. Nucleic Acids Res., 37, 5443-5453.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5443-5453
-
-
Bellamy, S.R.1
Kovacheva, Y.S.2
Zulkipli, I.H.3
Halford, S.E.4
-
38
-
-
65549171477
-
An end to 40 years of mistakes in DNA-protein association kinetics?
-
Halford, S. E. (2010) An end to 40 years of mistakes in DNA-protein association kinetics? Biochem. Soc. Trans., 37, 343-348.
-
(2010)
Biochem. Soc. Trans
, vol.37
, pp. 343-348
-
-
Halford, S.E.1
-
39
-
-
65249099497
-
Fundamental aspects of protein-protein association kinetics
-
Schreiber, G., Haran, G. and Zhou, H.-X. (2009) Fundamental aspects of protein-protein association kinetics. Chem. Rev., 109, 839-860.
-
(2009)
Chem. Rev
, vol.109
, pp. 839-860
-
-
Schreiber, G.1
Haran, G.2
Zhou, H.-X.3
-
40
-
-
0030985132
-
Rapid-reaction analysis of plasmid DNA cleavage by the EcoRV restriction endonuclease
-
Erskine, S. G., Baldwin, G. S. and Halford, S. E. (1997) Rapid-reaction analysis of plasmid DNA cleavage by the EcoRV restriction endonuclease. Biochemistry, 36, 7567-7576.
-
(1997)
Biochemistry
, vol.36
, pp. 7567-7576
-
-
Erskine, S.G.1
Baldwin, G.S.2
Halford, S.E.3
-
41
-
-
0033527546
-
The kinetic mechanism of EcoRI endonuclease
-
Wright, D. J., Jack, W. E. and Modrich, P. (1999) The kinetic mechanism of EcoRI endonuclease. J. Biol. Chem., 274, 31896-31902.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 31896-31902
-
-
Wright, D.J.1
Jack, W.E.2
Modrich, P.3
-
42
-
-
0028936107
-
Rapid reaction analysis of the catalytic cycle of the EcoRV restriction endonuclease
-
Baldwin, G. S., Vipond, I. B. and Halford, S. E. (1995) Rapid reaction analysis of the catalytic cycle of the EcoRV restriction endonuclease. Biochemistry, 34, 705-714.
-
(1995)
Biochemistry
, vol.34
, pp. 705-714
-
-
Baldwin, G.S.1
Vipond, I.B.2
Halford, S.E.3
-
43
-
-
0037451299
-
Protein motion from non-specific to specific DNA by three-dimensional routes aided by supercoiling
-
Gowers, D. M. and Halford, S. E. (2003) Protein motion from non-specific to specific DNA by three-dimensional routes aided by supercoiling. EMBO J., 22, 1410-1418.
-
(2003)
EMBO J
, vol.22
, pp. 1410-1418
-
-
Gowers, D.M.1
Halford, S.E.2
|