Conformational changes in the novel redox sensor protein HbpS studied by site-directed spin labeling and its turnover in dependence on the catalase-peroxidase CpeB

Antioxidants and Redox Signaling

Volumn 16, Issue 7, 2012, Pages 639-648

  Klare, Johann P ^a   De Orué Lucana, Darío Ortiz ^a  

^a UNIVERSITY OF OSNABRÜCK   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CATALASE; HYDROGEN PEROXIDE; PEROXIDASE; PROTEIN HBPS; UNCLASSIFIED DRUG;

ALPHA HELIX; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONFORMATIONAL TRANSITION; DOWN REGULATION; ELECTRON SPIN RESONANCE; NONHUMAN; OXIDATION REDUCTION REACTION; OXIDATIVE STRESS; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN CONFORMATION; PROTEIN FUNCTION; SPIN LABELING; STREPTOMYCES;

CARRIER PROTEINS; CATALASE; ELECTRON SPIN RESONANCE SPECTROSCOPY; HEMEPROTEINS; MODELS, MOLECULAR; OXIDATION-REDUCTION; PEROXIDASES; PROTEIN CONFORMATION; SIGNAL TRANSDUCTION; SPIN LABELS; STREPTOMYCES;

EID: 84856873087     PISSN: 15230864     EISSN: 15577716     Source Type: Journal    
DOI: 10.1089/ars.2011.4080     Document Type: Article

References (38)

1. Ando H, Kitao T, Miyoshi-Akiyama T, Kato S, Mori T, and Kirikae T. Downregulation of katG expression is associated with isoniazid resistance in Mycobacterium tuberculosis. Mol Microbiol 79: 1615-1628, 2011.
2. Andrews SC, Robinson AK, and Rodríguez-Quiñones F. Bacterial iron homeostasis. FEMS Microbiol Rev 27: 215-237, 2003. (Pubitemid 36694657)
3. Baltz RH. Molecular engineering approaches to peptide, polyketide and other antibiotics. Nat Biotechnol 24: 1533-1540, 2006. (Pubitemid 44967477)
4. Bogel G, Schrempf H, and Ortiz de Orué Lucana D. DNAbinding characteristics of the regulator SenR in response to phosphorylation by the sensor histidine autokinase SenS from Streptomyces reticuli. FEBS J 274: 3900-3913, 2007. (Pubitemid 47087678)
5. Bogel G, Schrempf H, and Ortiz de Orué Lucana D. The heme-binding protein HbpS regulates the activity of the Streptomyces reticuli iron-sensing histidine kinase SenS in a redox-dependent manner. Amino Acids 37: 681-691, 2009.
6. Bordignon E, Klare JP, Holterhues J, Martell S, Krasnaberski A, Engelhard M, and Steinhoff HJ. Analysis of light-induced conformational changes of natronomonas pharaonis sensory rhodopsin II by time resolved electron paramagnetic resonance spectroscopy. Photochem Photobiol 83: 263-272, 2007. (Pubitemid 46623047)
7. Chater KF, Biró S, Lee KJ, Palmer T, and Schrempf H. The complex extracellular biology of Streptomyces. FEMS Microbiol Rev 34: 171-198, 2010.
8. Fenton HJH. Oxidation of tartaric acid in the presence of iron. J Chem Soc 65: 899-910, 1986.
9. Groves MR and Ortiz de Orué Lucana D. Adaptation to oxidative stress by Gram-positive bacteria: the redox sensing system HbpS-SenS-SenR from Streptomyces reticuli. In: Current Research,Technology and Education Topics inApplied Microbiology andMicrobial Biotechnology, editedbyMendez-VilasA. Badajoz, Spain: Formatex Research Centre, 2010, pp. 33-42.
10. Jeschke G, Chechik V, Ionita P, Godt A, Zimmermann H, Banham JE, Timmel CR, Hilger D, and Jung H. Deer-Analysis2006-a comprehensive software package for analyzing pulsed ELDOR data. Appl Magn Reson 30: 473-498, 2006.
11. Johansson K, Jä rvliden J, Gogvadze V, and Morgenstern R. Multiple roles of microsomal glutathione transferase 1 in cellular protection: a mechanistic study. Free Radic Biol Med 49: 1638-1645, 2010.
12. Klare JP and Steinhoff HJ. Spin Labelling EPR. Photosynth Res 102: 377-390, 2009.
13. Klare JP and Steinhoff HJ. Site-directed spin labelling and pulse dipolar electron paramagnetic resonance. Encyclop Anal Chem a9024, 2010.
14. Linden A, Gülden M, Martin HJ, Maser E, and Seibert H. Peroxide-induced cell death and lipid peroxidation in C6 glioma cells. Toxicol In Vitro 22: 1371-1376, 2008.
15. Mackerell AD Jr., Feig M, and Brooks CL III. Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations. J Comput Chem 25: 1400-1415, 2004.
16. Martin RE, Pannier M, Diederich F, Gramlich V, Hubrich M, and Spiess HW. Determination of end-to-end distances in a series of TEMPO diradicals of up to 2.8nm length with a new four-pulse double electron electron resonance experiment. Angew Chem Int Ed 37: 2833-2837, 1998.
17. Meschke H and Schrempf H. Streptomyces lividans inhibits the proliferation of the fungus Verticillium dahliae on seeds and roots of Arabidopsis thaliana.Microb Biotechnol 3: 428-443, 2010.
18. Meyer S, Böhme S, Krüger A, Steinhoff HJ, Klare JP, and Wittinghofer A. Kissing G domains of MnmE monitored by X-ray crystallography and pulse EPR Spectroscopy. PloS Biol 7: e1000212, 2009.
19. Moukhametzianov R, Klare JP, Efremov R, Baeken C, Göppner A, Labahn J, Engelhard M, Bü ldt G, and Gordeliy VI. Development of the signal in sensory rhodopsin and its transfer to the cognate transducer. Nature 440: 115-119, 2006. (Pubitemid 43336278)
20. Nagababu E and Rifkind JM. Heme degradation by reactive oxygen species. Antioxid Redox Signal 6: 967-978, 2004. (Pubitemid 39434933)
21. Ortiz de Orué Lucana D and Schrempf H. The DNA-binding characteristics of the Streptomyces reticuli regulator FurS depend on the redox state of its cysteine residues. Mol Gen Genet 264: 341-353, 2000.
22. Ortiz de Orué Lucana D, Trö ller M, and Schrempf H. Amino acid residues involved in reversible thiol formation and zinc ion binding in the Streptomyces reticuli redox regulator FurS. Mol Genet Genomics 268: 618-627, 2003. (Pubitemid 36286505)
23. Ortiz de Orué Lucana D, Zou P, Nierhaus M, and Schrempf H. Identification of a novel two-component system SenS/SenR modulating the production of the catalase-peroxidase CpeB and the haem-binding protein HbpS in Streptomyces reticuli. Microbiology 151: 3603-3614, 2005. (Pubitemid 41637705)
24. Ortiz deOrué Lucana D and GrovesMR. The three-component signaling system HbpS-SenS-SenR as an example of a redox sensing pathway in bacteria. Amino Acids 37: 479-486, 2009.
25. Ortiz de Orué Lucana D, Bogel G, Zou P, and Groves MR. The oligomeric assembly of the novel haem degrading protein HbpS is essential for interaction with its cognate twocomponent sensor kinase. J Mol Biol 386: 1108-1122, 2009.
26. Ortiz de Orué Lucana D, Roscher M, Honigmann A, and Schwarz J. Iron-mediated oxidation induces conformational changes within the redox-sensing protein HbpS. J Biol Chem 285: 28086-28096, 2010.
27. Outten FW and Theil EC. Iron-based redox switches in biology. Antioxid Redox Signal 11: 1029-1046, 2009.
28. Pannier M, Veit S, Godt A, Jeschke G, and Spiess HW. Deadtime free measurement of dipole-dipole interactions between electron spins. J Magn Res 142: 331-340, 2000.
29. Polyhach Y, Bordignon E, and Jeschke G. Rotamer libraries of spin labelled cysteines for protein studies. Phys Chem Chem Phys 13: 2356-2366, 2011.
30. Reginsson GW and Schiemann O. Pulsed electron-electron double resonance: beyond nanometre distance measurements on biomacromolecules. Biochem J 434: 353-363, 2011.
31. Schrempf H. Plasmid loss and changeswithin the chromosomal DNA of Streptomyces reticuli. J Bacteriol 151: 701-707, 1982. (Pubitemid 13230462)
32. Siemieniewicz KW and Schrempf H. Concerted responses between the chitin-binding protein secreting Streptomyces olivaceoviridis and Aspergillus proliferans. Microbiology 153: 593-600, 2007.
33. Steinhoff HJ, Radzwill N, Thevis W, Lenz V, Brandenburg D, Antson A, Dodson GG, and Wollmer A. Determination of interspin distances between spin labels attached to insulin: comparison of electron paramagnetic resonance data with the X-ray structure. Biophys J 73: 3287-3298, 1997. (Pubitemid 27525791)
34. Steinhoff HJ, Pfeiffer M, Rink T, Burlon O, Kurz M, Riesle J, Heuberger E, Gerwert K, and Oesterhelt D. Azide reduces the hydrophobic barrier of the bacteriorhodopsin proton channel. Biophys J 76: 2702-2710, 1999. (Pubitemid 29264629)
35. Zhang Y, Heym B, Allen B, Young D, and Cole S. The catalase-peroxidase gene and isoniazid resistance of Mycobacterium tuberculosis. Nature 358: 591-593, 1992.
36. Zou P, Borovok I, Ortiz de Orué Lucana D, Müller D, and Schrempf H. The mycelium-associated Streptomyces reticuli catalase-peroxidase, its gene and regulation by FurS. Microbiology 145: 549-559, 1999. (Pubitemid 29127034)
37. Zou P and Schrempf H. The heme-independent manganeseperoxidase activity depends on the presence of the C-terminal domain within the Streptomyces reticuli catalase-peroxidase CpeB. Eur J Biochem 267: 2840-2849, 2000. (Pubitemid 30321329)
38. Zou P, Groves MR, Viale-Bouroncle SD, and Ortiz de Orué Lucana D. Cristallization and preliminary characterization of a novel haem-binding protein of Streptomyces reticuli. Acta Crystallogr Sect F Struct Biol Cryst Commun 64: 386-390, 2008. (Pubitemid 351631225)