메뉴 건너뛰기




Volumn 28, Issue 3, 2012, Pages 446-447

Pathvar: Analysis of gene and protein expression variance in cellular pathways using microarray data

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 84856560698     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr656     Document Type: Article
Times cited : (11)

References (19)
  • 1
    • 0035166973 scopus 로고    scopus 로고
    • The InterPro database, an integrated documentation resource for protein families, domains and functional sites
    • Apweiler, R. et al. (2001) The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res., 29, 37.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 37
    • Apweiler, R.1
  • 2
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: tool for the unification of biology
    • Ashburner, M. et al. (2000) Gene Ontology: tool for the unification of biology. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 3
    • 79959350055 scopus 로고    scopus 로고
    • A genome-wide network model capturing seed germination reveals co-ordinated regulation of plant cellular phase transitions
    • Bassel, G.W. et al. (2011) A genome-wide network model capturing seed germination reveals co-ordinated regulation of plant cellular phase transitions. Proc. Natl Acad. Sci. USA, 108, 9709-9714.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 9709-9714
    • Bassel, G.W.1
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini, Y. and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B, 57, 289-300.
    • (1995) J. R. Stat. Soc. Ser. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 70849131666 scopus 로고    scopus 로고
    • ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization
    • Glaab, E. et al. (2009) ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization. BMC Bioinformatics, 10, 358.
    • (2009) BMC Bioinformatics , vol.10 , pp. 358
    • Glaab, E.1
  • 6
    • 84856577612 scopus 로고    scopus 로고
    • Learning pathway-based decision rules to classify microarray cancer samples
    • Schomburg, D. and Grote, A. (eds) Gesellschaft für Informatik, Bonn, Germany
    • Glaab, E. et al. (2010) Learning pathway-based decision rules to classify microarray cancer samples. In Schomburg, D. and Grote, A. (eds) German Conference on Bioinformatics 2010, Vol. 173, Gesellschaft für Informatik, Bonn, Germany, pp. 123-134.
    • (2010) German Conference on Bioinformatics 2010 , vol.173 , pp. 123-134
    • Glaab, E.1
  • 7
    • 25444456388 scopus 로고    scopus 로고
    • Towards precise classification of cancers based on robust gene functional expression profiles
    • Guo, Z. et al. (2005) Towards precise classification of cancers based on robust gene functional expression profiles. BMC Bioinformatics, 6, 58.
    • (2005) BMC Bioinformatics , vol.6 , pp. 58
    • Guo, Z.1
  • 8
    • 79959735521 scopus 로고    scopus 로고
    • RERG (Ras-related and oestrogen-regulated growthinhibitor) expression in breast cancer:Amarker of ER-positive luminal-like subtype
    • Habashy, H.O. et al. (2011) RERG (Ras-related and oestrogen-regulated growthinhibitor) expression in breast cancer:Amarker of ER-positive luminal-like subtype. Breast Cancer Res. Treat., 128, 315-326.
    • (2011) Breast Cancer Res. Treat. , vol.128 , pp. 315-326
    • Habashy, H.O.1
  • 9
    • 13444259844 scopus 로고    scopus 로고
    • Reactome: a knowledgebase of biological pathways
    • Joshi-Tope, G. et al. (2005) Reactome: a knowledgebase of biological pathways. Nucleic Acids Res., 33 (Suppl 1), D428.
    • (2005) Nucleic Acids Res. , vol.33 , Issue.SUPPL. 1
    • Joshi-Tope, G.1
  • 10
    • 38549126643 scopus 로고    scopus 로고
    • KEGG for linking genomes to life and the environment
    • Kanehisa, M. et al. (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Res., 36, D480.
    • (2008) Nucleic Acids Res. , vol.36
    • Kanehisa, M.1
  • 11
    • 57149092133 scopus 로고    scopus 로고
    • Inferring pathway activity toward precise disease classification
    • Lee, E. et al. (2008) Inferring pathway activity toward precise disease classification. PLoS Comput. Biol., 4, e1000217.
    • (2008) PLoS Comput. Biol. , vol.4
    • Lee, E.1
  • 13
    • 48349105261 scopus 로고    scopus 로고
    • WikiPathways: pathway editing for the people
    • Pico, A. et al. (2008) WikiPathways: pathway editing for the people. PLoS Biol., 6, e184.
    • (2008) PLoS Biol. , vol.6
    • Pico, A.1
  • 14
    • 58149186477 scopus 로고    scopus 로고
    • PID: the pathway interaction database
    • Schaefer, C. et al. (2009) PID: the pathway interaction database. Nucleic Acids Res., 37 (Suppl 1), D674.
    • (2009) Nucleic Acids Res. , vol.37 , Issue.SUPPL. 1
    • Schaefer, C.1
  • 15
    • 19044391072 scopus 로고    scopus 로고
    • Gene expression correlates of clinical prostate cancer behavior
    • Singh, D. et al. (2002) Gene expression correlates of clinical prostate cancer behavior. Cancer Cell, 1, 203-209.
    • (2002) Cancer Cell , vol.1 , pp. 203-209
    • Singh, D.1
  • 16
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Smyth, G. (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol., 3, 3.
    • (2004) Stat. Appl. Genet. Mol. Biol. , vol.3 , pp. 3
    • Smyth, G.1
  • 17
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher, V. et al. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. USA, 98, 5116-5121.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 5116-5121
    • Tusher, V.1
  • 18
    • 33747883187 scopus 로고    scopus 로고
    • Novel unsupervised feature filtering of biological data
    • Varshavsky, R. et al. (2006) Novel unsupervised feature filtering of biological data. Bioinformatics, 22, e507.
    • (2006) Bioinformatics , vol.22
    • Varshavsky, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.