-
1
-
-
76649097656
-
Drug design for G-protein-coupled receptors by a ligand-based NMR method
-
doi: 10.1002/anie.200905102
-
Bartoschek S, Klabunde T, Defossa E, Dietrich V, Stengelin S, Griesinger C, Carlomagno T, Focken I, Wendt KU (2010) Drug design for G-protein-coupled receptors by a ligand-based NMR method. Angew Chem Int Ed 49(8):1426-1429. doi: 10.1002/anie.200905102
-
(2010)
Angew Chem Int Ed
, vol.49
, Issue.8
, pp. 1426-1429
-
-
Bartoschek, S.1
Klabunde, T.2
Defossa, E.3
Dietrich, V.4
Stengelin, S.5
Griesinger, C.6
Carlomagno, T.7
Focken, I.8
Wendt, K.U.9
-
2
-
-
58149204068
-
The protein structure initiative structural genomics knowledgebase
-
Berman HM, Westbrook JD, Gabanyi MJ, Tao W, Shah R, Kouranov A, Schwede T, Arnold K, Kiefer F, Bordoli L, Kopp J, Podvinec M, Adams PD, Carter LG, Minor W, Nair R, La Baer J (2009) The protein structure initiative structural genomics knowledgebase. Nucleic Acids Res 37:D365-D368
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Berman, H.M.1
Westbrook, J.D.2
Gabanyi, M.J.3
Tao, W.4
Shah, R.5
Kouranov, A.6
Schwede, T.7
Arnold, K.8
Kiefer, F.9
Bordoli, L.10
Kopp, J.11
Podvinec, M.12
Adams, P.D.13
Carter, L.G.14
Minor, W.15
Nair, R.16
La Baer, J.17
-
3
-
-
0033541092
-
Transferred cross-correlated relaxation: Application to the determination of sugar pucker in an aminoacylated tRNAmimetic weakly bound to EF-Tu
-
Carlomagno T, Felli I, Czech M, Fischer R, Sprinzl M, Griesinger C (1999) Transferred cross-correlated relaxation: Application to the determination of sugar pucker in an aminoacylated tRNAmimetic weakly bound to EF-Tu. J Am Chem Soc 121:1945-1948
-
(1999)
J Am Chem Soc
, vol.121
, pp. 1945-1948
-
-
Carlomagno, T.1
Felli, I.2
Czech, M.3
Fischer, R.4
Sprinzl, M.5
Griesinger, C.6
-
4
-
-
0037663864
-
Derivation of dihedral angles from CH-CH dipolar-dipolar cross-correlated relaxation rates: A C-C torsion involving a quaternary carbon atom in epothilone A bound to tubulin
-
DOI 10.1002/anie.200350950
-
Carlomagno T, Sanchez V, Blommers M, Griesinger C (2003) Derivation of dihedral angles from CH-CH dipolar-dipolar cross-correlated relaxation rates: A C-C torsion involving a quaternary carbon atom in epothilone A bound to tubulin. Angew Chem Int Ed Engl 42:2515-2517 (Pubitemid 36753424)
-
(2003)
Angewandte Chemie - International Edition
, vol.42
, Issue.22
, pp. 2515-2517
-
-
Carlomagno, T.1
Scanchez, V.M.2
Blommers, M.J.J.3
Griesinger, C.4
-
5
-
-
58149094776
-
ROSETTALIGAND docking with full ligand and receptor flexibility
-
doi: 10.1016/j.jmb.2008.11.010
-
Davis IW, Baker D (2009) ROSETTALIGAND docking with full ligand and receptor flexibility. J Mol Biol 385(2):381-392. doi: 10.1016/j.jmb.2008.11.010
-
(2009)
J Mol Biol
, vol.385
, Issue.2
, pp. 381-392
-
-
Davis, I.W.1
Baker, D.2
-
6
-
-
69249127027
-
Blind docking of pharmaceutically relevant compounds using RosettaLigand
-
Baker D
-
Davis IW, Raha K, Head MS, Baker D (2009) Blind docking of pharmaceutically relevant compounds using RosettaLigand. Protein Sci 18:1999-2002
-
(2009)
Protein Sci
, vol.18
, pp. 1999-2002
-
-
Davis, I.W.1
Raha, K.2
Head, M.S.3
-
7
-
-
0037434582
-
Surflex: Fully automatic flexible molecular docking using a molecular similarity-based search engine
-
DOI 10.1021/jm020406h
-
Jain AN (2003) Surflex: Fully automatic flexible molecular docking using a molecular similarity-based search engine. J Med Chem 46:499-511 (Pubitemid 36182752)
-
(2003)
Journal of Medicinal Chemistry
, vol.46
, Issue.4
, pp. 499-511
-
-
Jain, A.N.1
-
8
-
-
77649196223
-
GPCR 3D homology models for ligand screening: Lessons learned from blind predictions of adenosine A2a receptor complex
-
Katritch V, Rueda M, Lam PC, Yeager M, Abagyan R (2010) GPCR 3D homology models for ligand screening: Lessons learned from blind predictions of adenosine A2a receptor complex. Proteins 78:197-211
-
(2010)
Proteins
, vol.78
, pp. 197-211
-
-
Katritch, V.1
Rueda, M.2
Lam, P.C.3
Yeager, M.4
Abagyan, R.5
-
9
-
-
62449330667
-
Empirical scoring functions for advanced protein-ligand docking with PLANTS
-
Korb O, Stützle T, Exner TE (2009) Empirical scoring functions for advanced protein-ligand docking with PLANTS. J Chem Inf Model 49:84-96
-
(2009)
J Chem Inf Model
, vol.49
, pp. 84-96
-
-
Korb, O.1
Stützle, T.2
Exner, T.E.3
-
10
-
-
77950543366
-
Troubleshooting computational methods in drug discovery
-
Kortagere S, Ekins S (2010) Troubleshooting computational methods in drug discovery. J Pharmacol Toxicol Methods 61:67-75
-
(2010)
J Pharmacol Toxicol Methods
, vol.61
, pp. 67-75
-
-
Kortagere, S.1
Ekins, S.2
-
11
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell AD Jr, Bashford D, Bellott M, Dunbrack RL Jr, Evanseck J, Field MJ, Fischer S, Gao J, Guo H, Ha S, Joseph D, Kuchnir L, Kuczera K, Lau FTK, Mattos C, Michnick S, Ngo T, Nguyen DT, Prodhom B, Reiher IWE, Roux B, Schlenkrich M, Smith J, Stote R, Straub J, Watanabe M, Wiorkiewicz-Kuczera J, Yin D, Karplus M (1988) All-atom empirical potential for molecular modeling and dynamics studies of proteins. J Phys Chem B 102:3586-3616
-
(1988)
J Phys Chem B
, vol.102
, pp. 3586-3616
-
-
MacKerell Jr., A.D.1
Bashford, D.2
Bellott, M.3
Dunbrack Jr., R.L.4
Evanseck, J.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher, I.W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewicz-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
12
-
-
0034823890
-
Group epitope mapping by saturation transfer difference NMR to identify segments of a ligand in direct contact with a protein receptor
-
DOI 10.1021/ja0100120
-
Mayer M, Meyer B (2001) Group epitope mapping by saturation transfer difference NMR to identify segments of a ligand in direct contact with a protein receptor. J Am Chem Soc 123:6108-6117 (Pubitemid 32888480)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.25
, pp. 6108-6117
-
-
Mayer, M.1
Meyer, B.2
-
13
-
-
12044258461
-
Use of the transferred nuclear overhauser effect to determine the conformations of ligands bound to proteins
-
Ni F, Scheraga HA (1994) Use of the transferred nuclear overhauser effect to determine the conformations of ligands bound to proteins. Acc Chem Res 27(9):257-264
-
(1994)
Acc Chem Res
, vol.27
, Issue.9
, pp. 257-264
-
-
Ni, F.1
Scheraga, H.A.2
-
14
-
-
54749102626
-
Crystallography-independent determination of ligand binding modes
-
Orts J, Tuma J, Reese M, Grimm SK, Monecke P, Bartoschek S, Schiffer A, Wendt KU, Griesinger C, Carlomagno T (2008) Crystallography-independent determination of ligand binding modes. Angew Chem Int Ed Engl 47:7736-7740
-
(2008)
Angew Chem Int Ed Engl
, vol.47
, pp. 7736-7740
-
-
Orts, J.1
Tuma, J.2
Reese, M.3
Grimm, S.K.4
Monecke, P.5
Bartoschek, S.6
Schiffer, A.7
Wendt, K.U.8
Griesinger, C.9
Carlomagno, T.10
-
15
-
-
68049093935
-
The INPHARMA technique for pharmacophore mapping: A theoretical guide to the method
-
Orts J, Griesinger C, Carlomagno T (2009) The INPHARMA technique for pharmacophore mapping: A theoretical guide to the method. J Magn Res 200(1):64-73
-
(2009)
J Magn Res
, vol.200
, Issue.1
, pp. 64-73
-
-
Orts, J.1
Griesinger, C.2
Carlomagno, T.3
-
17
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
DOI 10.1002/jcc.20289
-
Phillips JC, Braun R, Wang W, Gumbart J, Tajkhorshid E, Villa E, Chipot C, Skeel RD, Kalé L, SchultenK(2005) Scalable molecular dynamics with NAMD. J Comput Chem 26:1781-1802 (Pubitemid 43078511)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
18
-
-
0035524803
-
Nuclear magnetic resonance as a tool in drug discovery, metabolism and disposition
-
Pochapsky S, Pochapsky T (2001) Nuclear magnetic resonance as a tool in drug discovery, metabolism and disposition. Curr Top Med Chem 1:427-441
-
(2001)
Curr Top Med Chem
, vol.1
, pp. 427-441
-
-
Pochapsky, S.1
Pochapsky, T.2
-
19
-
-
77449138099
-
Modeling G proteincoupled receptors for structure-based drug discovery using lowfrequency normal modes for refinement of homology models: Application to H3 antagonists
-
Rai B, Tawa G, Katz A, Humblet C (2010) Modeling G proteincoupled receptors for structure-based drug discovery using lowfrequency normal modes for refinement of homology models: Application to H3 antagonists. Proteins 78:457-473
-
(2010)
Proteins
, vol.78
, pp. 457-473
-
-
Rai, B.1
Tawa, G.2
Katz, A.3
Humblet, C.4
-
20
-
-
4344592378
-
Fragment-based lead discovery
-
Rees DC, Congreve M, Murray CW, Carr R (2004) Fragment-based lead discovery. Nat Rev Drug Discov 3(8):660-672 (Pubitemid 39173507)
-
(2004)
Nature Reviews Drug Discovery
, vol.3
, Issue.8
, pp. 660-672
-
-
Ress, D.C.1
Congreve, M.2
Murray, C.W.3
Carr, R.4
-
21
-
-
34249666266
-
Structural basis of the activity of the microtubule-stabilizing agent epothilone a studied by NMR spectroscopy in solution
-
DOI 10.1002/anie.200604505
-
Reese M, Sanchez-Pedregal VM, Kubicek K, Meiler J, Blommers MJJ, Griesinger C, Carlomagno T (2007) Structural basis of the activity of the microtubule-stabilizing agent epothilone A studied by NMR spectroscopy in solution. Angew Chem Int Ed Engl 46(11):1864-1868 (Pubitemid 46981323)
-
(2007)
Angewandte Chemie - International Edition
, vol.46
, Issue.11
, pp. 1864-1868
-
-
Reese, M.1
Sanchez-Pedregal, V.M.2
Kubicek, K.3
Meiler, J.4
Blommers, M.J.J.5
Griesinger, C.6
Carlomagno, T.7
-
22
-
-
22144454299
-
The INPHARMA method: Protein-mediated interligand NOEs for pharmacophore mapping
-
DOI 10.1002/anie.200500503
-
Sanchez-Pedregal VM, Reese M, Meiler J, Blommers MJ, Griesinger C, Carlomagno T (2005) The INPHARMA method: Proteinmediated interligand NOEs for pharmacophore mapping. Angew Chem Int Ed Engl 44(27):4172-4175 (Pubitemid 40968490)
-
(2005)
Angewandte Chemie - International Edition
, vol.44
, Issue.27
, pp. 4172-4175
-
-
Sanchez-Pedregal, V.M.1
Reese, M.2
Meiler, J.3
Blommers, M.J.J.4
Griesinger, C.5
Carlomagno, T.6
-
24
-
-
38549097071
-
The universal protein resource (UniProt)
-
The UniProt Consortium
-
The UniProt Consortium (2008) The universal protein resource (UniProt). Nucleic Acids Res 36:D190-D195
-
(2008)
Nucleic Acids Res
, vol.36
-
-
-
25
-
-
0037088994
-
Structure-based screening and design in drug discovery
-
DOI 10.1016/S1359-6446(02)02233-X, PII S135964460202233X
-
Van Dongen M, Weigelt J, Uppenberg J, Schultz J, Wikström M (2002) Structurebased screening and design in drug discovery. Drug Discov Today 7:471-478 (Pubitemid 34532574)
-
(2002)
Drug Discovery Today
, vol.7
, Issue.8
, pp. 471-478
-
-
Van Dongen, M.1
Weigelt, J.2
Uppenberg, J.3
Schultz, J.4
Wikstrom, M.5
|