-
1
-
-
5344247436
-
Supervised analysis when the number of candidate feature (p) greatly exceeds the number of cases (n)
-
Simon R. Supervised analysis when the number of candidate feature (p) greatly exceeds the number of cases (n). ACM SIGKDD Explor. Newsl. 2003, 5:31-36.
-
(2003)
ACM SIGKDD Explor. Newsl.
, vol.5
, pp. 31-36
-
-
Simon, R.1
-
2
-
-
0037245343
-
Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification
-
Simon R., Radmacher M.D., Dobbin K., McShane L.M. Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification. J. Natl. Cancer Inst. 2003, 95:14-18.
-
(2003)
J. Natl. Cancer Inst.
, vol.95
, pp. 14-18
-
-
Simon, R.1
Radmacher, M.D.2
Dobbin, K.3
McShane, L.M.4
-
3
-
-
74049095106
-
Accurate molecular classification of cancer using simple rules
-
Wang X., Gotoh O. Accurate molecular classification of cancer using simple rules. BMC Med. Genomics 2009, 2:64.
-
(2009)
BMC Med. Genomics
, vol.2
, pp. 64
-
-
Wang, X.1
Gotoh, O.2
-
4
-
-
77956492136
-
Simple and flexible classification of gene expression microarrays via Swirls and Ripples
-
Baker S.G. Simple and flexible classification of gene expression microarrays via Swirls and Ripples. BMC Bioinformatics 2010, 11:452.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 452
-
-
Baker, S.G.1
-
5
-
-
0037245821
-
Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia (ALL) patients
-
Li J., Liu H., Downing J.R., Yeoh A.E., Wong L. Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia (ALL) patients. Bioinformatics 2003, 19:71-78.
-
(2003)
Bioinformatics
, vol.19
, pp. 71-78
-
-
Li, J.1
Liu, H.2
Downing, J.R.3
Yeoh, A.E.4
Wong, L.5
-
6
-
-
27544459288
-
A protocol for building and evaluating predictors of disease state based on microarray data
-
Wessels L.F.A., Reinders M.J.T., Hart A.A.M., Veenman C.J., Dai H., He Y.D., van't Veer L.J. A protocol for building and evaluating predictors of disease state based on microarray data. Bioinform. (Oxf. Engl.) 2005, 21:3755-3762.
-
(2005)
Bioinform. (Oxf. Engl.)
, vol.21
, pp. 3755-3762
-
-
Wessels, L.F.A.1
Reinders, M.J.T.2
Hart, A.A.M.3
Veenman, C.J.4
Dai, H.5
He, Y.D.6
van't Veer, L.J.7
-
9
-
-
27544451127
-
Simple decision rules for classifying human cancers from gene expression profiles
-
Tan A.C., Naiman D.Q., Xu L., Winslow R.L., Geman D. Simple decision rules for classifying human cancers from gene expression profiles. Bioinformatics 2005, 21:3896-3904.
-
(2005)
Bioinformatics
, vol.21
, pp. 3896-3904
-
-
Tan, A.C.1
Naiman, D.Q.2
Xu, L.3
Winslow, R.L.4
Geman, D.5
-
10
-
-
73449084423
-
Two-transcript gene expression classifiers in the diagnosis and prognosis of human diseases
-
Edelman L.B., Toia G., Geman D., Zhang W., Price N.D. Two-transcript gene expression classifiers in the diagnosis and prognosis of human diseases. BMC Genomics 2009, 10:583.
-
(2009)
BMC Genomics
, vol.10
, pp. 583
-
-
Edelman, L.B.1
Toia, G.2
Geman, D.3
Zhang, W.4
Price, N.D.5
-
11
-
-
27544492493
-
Robust prostate cancer marker genes emerge from direct integration of inter-study microarray data
-
Xu L., Tan A.C., Naiman D.Q., Geman D., Winslow R.L. Robust prostate cancer marker genes emerge from direct integration of inter-study microarray data. Bioinformatics 2005, 21:3905-3911.
-
(2005)
Bioinformatics
, vol.21
, pp. 3905-3911
-
-
Xu, L.1
Tan, A.C.2
Naiman, D.Q.3
Geman, D.4
Winslow, R.L.5
-
12
-
-
77955711890
-
Usefulness of the top-scoring pairs of genes for prediction of prostate cancer progression
-
Zhao H., Logothetis C.J., Gorlov I.P. Usefulness of the top-scoring pairs of genes for prediction of prostate cancer progression. Prostate Cancer Prostatic Dis. 2010, 13:252-259.
-
(2010)
Prostate Cancer Prostatic Dis.
, vol.13
, pp. 252-259
-
-
Zhao, H.1
Logothetis, C.J.2
Gorlov, I.P.3
-
13
-
-
75149130928
-
Evaluation of microRNA expression profiles that may predict recurrence of localized stage I non-small cell lung cancer after surgical resection
-
Patnaik S.K., Kannisto E., Knudsen S., Yendamuri S. Evaluation of microRNA expression profiles that may predict recurrence of localized stage I non-small cell lung cancer after surgical resection. Cancer Res. 2010, 70:36-45.
-
(2010)
Cancer Res.
, vol.70
, pp. 36-45
-
-
Patnaik, S.K.1
Kannisto, E.2
Knudsen, S.3
Yendamuri, S.4
-
14
-
-
41949125894
-
A 2-gene classifier for predicting response to the farnesyltransferase inhibitor tipifarnib in acute myeloid leukemia
-
Raponi M., Lancet J.E., Fan H., Dossey L., Lee G., Gojo I., Feldman E.J., Gotlib J., Morris L.E., Greenberg P.L., Wright J.J., Harousseau J.-L., Lowenberg B., Stone R.M., De Porre P., Wang Y., Karp J.E. A 2-gene classifier for predicting response to the farnesyltransferase inhibitor tipifarnib in acute myeloid leukemia. Blood 2008, 111:2589-2596.
-
(2008)
Blood
, vol.111
, pp. 2589-2596
-
-
Raponi, M.1
Lancet, J.E.2
Fan, H.3
Dossey, L.4
Lee, G.5
Gojo, I.6
Feldman, E.J.7
Gotlib, J.8
Morris, L.E.9
Greenberg, P.L.10
Wright, J.J.11
Harousseau, J.-L.12
Lowenberg, B.13
Stone, R.M.14
De Porre, P.15
Wang, Y.16
Karp, J.E.17
-
15
-
-
2942578063
-
A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen
-
Ma X.-J., Wang Z., Ryan P.D., Isakoff S.J., Barmettler A., Fuller A., Muir B., Mohapatra G., Salunga R., Tuggle J.T., Tran Y., Tran D., Tassin A., Amon P., Wang W., Wang W., Enright E., Stecker K., Estepa-Sabal E., Smith B., Younger J., Balis U., Michaelson J., Bhan A., Habin K., Baer T.M., Brugge J., Haber D.A., Erlander M.G., Sgroi D.C. A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen. Cancer Cell 2004, 5:607-616.
-
(2004)
Cancer Cell
, vol.5
, pp. 607-616
-
-
Ma, X.-J.1
Wang, Z.2
Ryan, P.D.3
Isakoff, S.J.4
Barmettler, A.5
Fuller, A.6
Muir, B.7
Mohapatra, G.8
Salunga, R.9
Tuggle, J.T.10
Tran, Y.11
Tran, D.12
Tassin, A.13
Amon, P.14
Wang, W.15
Wang, W.16
Enright, E.17
Stecker, K.18
Estepa-Sabal, E.19
Smith, B.20
Younger, J.21
Balis, U.22
Michaelson, J.23
Bhan, A.24
Habin, K.25
Baer, T.M.26
Brugge, J.27
Haber, D.A.28
Erlander, M.G.29
Sgroi, D.C.30
more..
-
16
-
-
33847665105
-
Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas
-
Price N.D., Trent J., El-Naggar A.K., Cogdell D., Taylor E., Hunt K.K., Pollock R.E., Hood L., Shmulevich I., Zhang W. Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:3414-3419.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 3414-3419
-
-
Price, N.D.1
Trent, J.2
El-Naggar, A.K.3
Cogdell, D.4
Taylor, E.5
Hunt, K.K.6
Pollock, R.E.7
Hood, L.8
Shmulevich, I.9
Zhang, W.10
-
17
-
-
0036372855
-
New feature subset selection procedures for classification of expression profiles
-
RESEARCH0017
-
Bo T., Jonassen I. New feature subset selection procedures for classification of expression profiles. Genome Biol. 2002, 3. RESEARCH0017.
-
(2002)
Genome Biol.
, vol.3
-
-
Bo, T.1
Jonassen, I.2
-
18
-
-
33748961513
-
A comparison of univariate and multivariate gene selection techniques for classification of cancer datasets
-
Lai C., Reinders M.J.T., van't Veer L.J., Wessels L.F.A. A comparison of univariate and multivariate gene selection techniques for classification of cancer datasets. BMC Bioinformatics 2006, 7:235.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 235
-
-
Lai, C.1
Reinders, M.J.T.2
van't Veer, L.J.3
Wessels, L.F.A.4
-
20
-
-
49649117439
-
BRB-ArrayTools Data Archive for human cancer gene expression: a unique and efficient data sharing resource
-
Zhao Y., Simon R. BRB-ArrayTools Data Archive for human cancer gene expression: a unique and efficient data sharing resource. Cancer Inf. 2008, 6:9-15.
-
(2008)
Cancer Inf.
, vol.6
, pp. 9-15
-
-
Zhao, Y.1
Simon, R.2
-
21
-
-
80053533738
-
Microarray-based Cancer Prediction Using Single Genes
-
Wang X., Simon R. Microarray-based Cancer Prediction Using Single Genes. BMC Bioinformatics 2011, 12:391.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 391
-
-
Wang, X.1
Simon, R.2
-
22
-
-
34447560961
-
Analysis of gene expression data using BRB-Array Tools
-
Simon R., Lam A., Li M.-C., Ngan M., Menenzes S., Zhao Y. Analysis of gene expression data using BRB-Array Tools. Cancer Inform. 2007, 3:11-17.
-
(2007)
Cancer Inform.
, vol.3
, pp. 11-17
-
-
Simon, R.1
Lam, A.2
Li, M.-C.3
Ngan, M.4
Menenzes, S.5
Zhao, Y.6
-
23
-
-
27144537768
-
Novel genes associated with malignant melanoma but not benign melanocytic lesions
-
Talantov D., Mazumder A., Yu J.X., Briggs T., Jiang Y., Backus J., Atkins D., Wang Y. Novel genes associated with malignant melanoma but not benign melanocytic lesions. Clin. Cancer Res. Off. J Am. Assoc. Cancer Res. 2005, 11:7234-7242.
-
(2005)
Clin. Cancer Res. Off. J Am. Assoc. Cancer Res.
, vol.11
, pp. 7234-7242
-
-
Talantov, D.1
Mazumder, A.2
Yu, J.X.3
Briggs, T.4
Jiang, Y.5
Backus, J.6
Atkins, D.7
Wang, Y.8
-
24
-
-
0042838307
-
Breast cancer classification and prognosis based on gene expression profiles from a population-based study
-
Sotiriou C., Neo S.-Y., McShane L.M., Korn E.L., Long P.M., Jazaeri A., Martiat P., Fox S.B., Harris A.L., Liu E.T. Breast cancer classification and prognosis based on gene expression profiles from a population-based study. Proc. Natl. Acad. Sci. U.S.A. 2003, 100:10393-10398.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 10393-10398
-
-
Sotiriou, C.1
Neo, S.-Y.2
McShane, L.M.3
Korn, E.L.4
Long, P.M.5
Jazaeri, A.6
Martiat, P.7
Fox, S.B.8
Harris, A.L.9
Liu, E.T.10
-
25
-
-
0037165140
-
Prediction of central nervous system embryonal tumour outcome based on gene expression
-
Pomeroy S.L., Tamayo P., Gaasenbeek M., Sturla L.M., Angelo M., McLaughlin M.E., Kim J.Y.H., Goumnerova L.C., Black P.M., Lau C., Allen J.C., Zagzag D., Olson J.M., Curran T., Wetmore C., Biegel J.A., Poggio T., Mukherjee S., Rifkin R., Califano A., Stolovitzky G., Louis D.N., Mesirov J.P., Lander E.S., Golub T.R. Prediction of central nervous system embryonal tumour outcome based on gene expression. Nature 2002, 415:436-442.
-
(2002)
Nature
, vol.415
, pp. 436-442
-
-
Pomeroy, S.L.1
Tamayo, P.2
Gaasenbeek, M.3
Sturla, L.M.4
Angelo, M.5
McLaughlin, M.E.6
Kim, J.Y.H.7
Goumnerova, L.C.8
Black, P.M.9
Lau, C.10
Allen, J.C.11
Zagzag, D.12
Olson, J.M.13
Curran, T.14
Wetmore, C.15
Biegel, J.A.16
Poggio, T.17
Mukherjee, S.18
Rifkin, R.19
Califano, A.20
Stolovitzky, G.21
Louis, D.N.22
Mesirov, J.P.23
Lander, E.S.24
Golub, T.R.25
more..
-
26
-
-
12444313589
-
Variation in gene expression patterns in human gastric cancers
-
Chen X., Leung S.Y., Yuen S.T., Chu K.-M., Ji J., Li R., Chan A.S.Y., Law S., Troyanskaya O.G., Wong J., So S., Botstein D., Brown P.O. Variation in gene expression patterns in human gastric cancers. Mol. Biol. Cell 2003, 14:3208-3215.
-
(2003)
Mol. Biol. Cell
, vol.14
, pp. 3208-3215
-
-
Chen, X.1
Leung, S.Y.2
Yuen, S.T.3
Chu, K.-M.4
Ji, J.5
Li, R.6
Chan, A.S.Y.7
Law, S.8
Troyanskaya, O.G.9
Wong, J.10
So, S.11
Botstein, D.12
Brown, P.O.13
-
27
-
-
0035923521
-
Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses
-
Bhattacharjee A., Richards W.G., Staunton J., Li C., Monti S., Vasa P., Ladd C., Beheshti J., Bueno R., Gillette M., Loda M., Weber G., Mark E.J., Lander E.S., Wong W., Johnson B.E., Golub T.R., Sugarbaker D.J., Meyerson M. Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses. Proc. Natl. Acad. Sci. U.S.A. 2001, 98:13790-13795.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 13790-13795
-
-
Bhattacharjee, A.1
Richards, W.G.2
Staunton, J.3
Li, C.4
Monti, S.5
Vasa, P.6
Ladd, C.7
Beheshti, J.8
Bueno, R.9
Gillette, M.10
Loda, M.11
Weber, G.12
Mark, E.J.13
Lander, E.S.14
Wong, W.15
Johnson, B.E.16
Golub, T.R.17
Sugarbaker, D.J.18
Meyerson, M.19
-
28
-
-
0036735386
-
Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma
-
Gordon G.J., Jensen R.V., Hsiao L.L., Gullans S.R., Blumenstock J.E., Ramaswamy S., Richards W.G., Sugarbaker D.J., Bueno R. Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma. Cancer Res. 2002, 62:4963-4967.
-
(2002)
Cancer Res.
, vol.62
, pp. 4963-4967
-
-
Gordon, G.J.1
Jensen, R.V.2
Hsiao, L.L.3
Gullans, S.R.4
Blumenstock, J.E.5
Ramaswamy, S.6
Richards, W.G.7
Sugarbaker, D.J.8
Bueno, R.9
-
29
-
-
18244409933
-
Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning
-
Shipp M.A., Ross K.N., Tamayo P., Weng A.P., Kutok J.L., Aguiar R.C.T., Gaasenbeek M., Angelo M., Reich M., Pinkus G.S., Ray T.S., Koval M.A., Last K.W., Norton A., Lister T.A., Mesirov J., Neuberg D.S., Lander E.S., Aster J.C., Golub T.R. Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning. Nat. Med. 2002, 8:68-74.
-
(2002)
Nat. Med.
, vol.8
, pp. 68-74
-
-
Shipp, M.A.1
Ross, K.N.2
Tamayo, P.3
Weng, A.P.4
Kutok, J.L.5
Aguiar, R.C.T.6
Gaasenbeek, M.7
Angelo, M.8
Reich, M.9
Pinkus, G.S.10
Ray, T.S.11
Koval, M.A.12
Last, K.W.13
Norton, A.14
Lister, T.A.15
Mesirov, J.16
Neuberg, D.S.17
Lander, E.S.18
Aster, J.C.19
Golub, T.R.20
more..
-
30
-
-
0346363760
-
The role of the Wnt-signaling antagonist DKK1 in the development of osteolytic lesions in multiple myeloma
-
Tian E., Zhan F., Walker R., Rasmussen E., Ma Y., Barlogie B., Shaughnessy J.D. The role of the Wnt-signaling antagonist DKK1 in the development of osteolytic lesions in multiple myeloma. N. Engl. J. Med. 2003, 349:2483-2494.
-
(2003)
N. Engl. J. Med.
, vol.349
, pp. 2483-2494
-
-
Tian, E.1
Zhan, F.2
Walker, R.3
Rasmussen, E.4
Ma, Y.5
Barlogie, B.6
Shaughnessy, J.D.7
-
31
-
-
23844444229
-
Experimental trial for diagnosis of pancreatic ductal carcinoma based on gene expression profiles of pancreatic ductal cells
-
Ishikawa M., Yoshida K., Yamashita Y., Ota J., Takada S., Kisanuki H., Koinuma K., Choi Y.L., Kaneda R., Iwao T., Tamada K., Sugano K., Mano H. Experimental trial for diagnosis of pancreatic ductal carcinoma based on gene expression profiles of pancreatic ductal cells. Cancer Sci. 2005, 96:387-393.
-
(2005)
Cancer Sci.
, vol.96
, pp. 387-393
-
-
Ishikawa, M.1
Yoshida, K.2
Yamashita, Y.3
Ota, J.4
Takada, S.5
Kisanuki, H.6
Koinuma, K.7
Choi, Y.L.8
Kaneda, R.9
Iwao, T.10
Tamada, K.11
Sugano, K.12
Mano, H.13
-
32
-
-
19044391072
-
Gene expression correlates of clinical prostate cancer behavior
-
Singh D., Febbo P.G., Ross K., Jackson D.G., Manola J., Ladd C., Tamayo P., Renshaw A.A., D'Amico A.V., Richie J.P., Lander E.S., Loda M., Kantoff P.W., Golub T.R., Sellers W.R. Gene expression correlates of clinical prostate cancer behavior. Cancer Cell 2002, 1:203-209.
-
(2002)
Cancer Cell
, vol.1
, pp. 203-209
-
-
Singh, D.1
Febbo, P.G.2
Ross, K.3
Jackson, D.G.4
Manola, J.5
Ladd, C.6
Tamayo, P.7
Renshaw, A.A.8
D'Amico, A.V.9
Richie, J.P.10
Lander, E.S.11
Loda, M.12
Kantoff, P.W.13
Golub, T.R.14
Sellers, W.R.15
|