Kinetic Proofreading in Chromatin Remodeling: The Case of ISWI/ACF

Biophysical Journal

Volumn 101, Issue 4, 2011, Pages L30-L32

  Blossey, Ralf ^a   Schiessel, Helmut ^b  

^a CNRS   (France)

^b UNIVERSITEIT LEIDEN   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; DNA; HISTONE; ISWI PROTEIN; TRANSCRIPTION FACTOR;

ARTICLE; BIOLOGICAL MODEL; CHROMATIN ASSEMBLY AND DISASSEMBLY; KINETICS; METABOLISM;

ADENOSINE TRIPHOSPHATASES; CHROMATIN ASSEMBLY AND DISASSEMBLY; DNA; HISTONES; KINETICS; MODELS, BIOLOGICAL; TRANSCRIPTION FACTORS;

MLCS; MLOWN;

EID: 84856365522     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2011.07.001     Document Type: Article

References (18)

1. Yamane, T., Hopfield, J.J., Experimental evidence for kinetic proofreading in the aminoacylation of tRNA by synthetase. Proc. Natl. Acad. Sci. USA 74 (1977), 2246–2250.
2. Yan, J., Magnasco, M.O., Marko, J.F., A kinetic proofreading mechanism for disentanglement of DNA by topoisomerases. Nature 401 (1999), 932–935.
3. Swain, P.S., Siggia, E.D., The role of proofreading in signal transduction specificity. Biophys. J. 82 (2002), 2928–2933.
4. Blossey, R., Schiessel, H., Kinetic proofreading of gene activation by chromatin remodeling. HFSP J. 2 (2008), 167–170.
5. Narlikar, G.J., A proposal for kinetic proof reading by ISWI family chromatin remodeling motors. Curr. Opin. Chem. Biol. 14 (2010), 660–665.
6. Imbalzano, A.N., Xiao, H., Functional properties of ATP-dependent chromatin remodeling enzymes. Adv. Protein Chem. 67 (2004), 157–179.
7. Clapier, C.R., Cairns, B.R., The biology of chromatin remodeling complexes. Annu. Rev. Biochem. 78 (2009), 273–304.
8. Kassabov, S.R., Zhang, B., et al., Bartholomew, B., SWI/SNF unwraps, slides, and rewraps the nucleosome. Mol. Cell 11 (2003), 391–403.
9. Dang, W.W., Kagalwala, M.N., Bartholomew, B., Regulation of ISW2 by concerted action of histone H4 tail and extranucleosomal DNA. Mol. Cell. Biol. 26 (2006), 7388–7396.
10. Hopfield, J.J., Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity. Proc. Natl. Acad. Sci. USA 71 (1974), 4135–4139.
11. Partensky, P.D., Narlikar, G.J., Chromatin remodelers act globally, sequence positions nucleosomes locally. J. Mol. Biol. 391 (2009), 12–25.
12. Clapier, C.R., Längst, G., et al., Nightingale, K.P., Critical role for the histone H4 N terminus in nucleosome remodeling by ISWI. Mol. Cell. Biol. 21 (2001), 875–883.
13. Corona, D.F.V., Clapier, C.R., et al., Tamkun, J.W., Modulation of ISWI function by site-specific histone acetylation. EMBO Rep. 3 (2002), 242–247.
14. Racki, L.R., Yang, J.G., et al., Narlikar, G.J., The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes. Nature 462 (2009), 1016–1021.
15. Yang, J.G., Madrid, T.S., et al., Narlikar, G.J., The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing. Nat. Struct. Mol. Biol. 13 (2006), 1078–1083.
16. Dang, W., Bartholomew, B., Domain architecture of the catalytic subunit in the ISW2-nucleosome complex. Mol. Cell. Biol. 27 (2007), 8306–8317.
17. Blosser, T.R., Yang, J.G., et al., Zhuang, X., Dynamics of nucleosome remodeling by individual ACF complexes. Nature 426 (2009), 1022–1028.
18. Erdel, F., Schubert, T., et al., Rippe, K., Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites. Proc. Natl. Acad. Sci. USA 107 (2010), 19873–19878.