Target enrichment via DNA hybridization capture

Methods in Molecular Biology

Volumn 840, Issue , 2012, Pages 177-188

  Horn, Susanne ^a  

^a MAX PLANCK INSTITUTE FOR EVOLUTIONARY ANTHROPOLOGY   (Germany)

Author keywords

ancient DNA; bait; DNA capture; high throughput sequencing; hybridization; target enrichment

Indexed keywords

DNA;

ANIMAL; ARTICLE; FOSSIL; GENE LIBRARY; GENETICS; HIGH THROUGHPUT SEQUENCING; ISOLATION AND PURIFICATION; METHODOLOGY; NUCLEIC ACID HYBRIDIZATION;

ANIMALS; DNA; FOSSILS; GENE LIBRARY; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; NUCLEIC ACID HYBRIDIZATION;

EID: 84856296578     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-516-9_21     Document Type: Article

References (19)

1. Rasmussen M et al (2010) Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 463(7282):757-762
2. Green RE et al (2010) A draft sequence of the Neandertal genome. Science 328(5979): 710-722
3. Reich D et al (2010) Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature 468(7327):1053-1060
4. John JS, Quinn TW (2008) Rapid capture of DNA targets. Biotechniques 44(2): 259-264
5. Gnirke A et al (2009) Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nat Biotechnol 27(2):182-189
6. Hodges E et al (2007) Genome-wide in situ exon capture for selective resequencing. Nat Genet 39(12):1522-1527
7. Burbano HA et al (2010) Targeted investigation of the Neandertal genome by array-based sequence capture. Science 328(5979): 723-725
8. Stiller M et al (2006) Inaugural article: patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA. Proc Natl Acad Sci U S A 103(37):13578-13584
9. Briggs AW et al (2007) Patterns of damage in genomic DNA sequences from a Neandertal. Proc Natl Acad Sci 104(37): 14616-14621
10. Briggs AW et al (2009) Targeted retrieval and analysis of five Neandertal mtDNA genomes. Science 325(5938):318-321
11. Meyer M, Kircher M (2010) Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb Protoc 2010(6):pdb.prot5448. doi: 10.1101/pdb.prot5448
12. Teer JK et al (2010) Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing. Genome Res 20(10):1420-1431
13. Blow N (2009) Genomics: catch me if you can. Nat Methods 6(7):539-544
14. Maricic T, Whitten M, Pääbo S (2010) Multiplexed DNA sequence capture of mitochondrial genomes using PCR products. PLoS One 5(11):e14004
15. Noonan JP et al (2006) Sequencing and analysis of Neanderthal genomic DNA. Science 314:1113-1118
16. Sanger (2010) ftp://ftp.sanger.ac.uk/pub/pulldown/array20hyb20protocol. pdf
17. Sanger (2010) ftp://ftp.sanger.ac.uk/pub/pulldown/ Solution20hyb20protocol.pdf
18. Meyer M, Stenzel U, Hofreiter M (2008) Parallel tagged sequencing on the 454 platform. Nat Protoc 3(2):267-278
19. Paul N, Yee J (2010) PCR incorporation of modifi ed dNTPs: the substrate properties of biotinylated dNTPs. Biotechniques 48(4): 333-334