Unique patterns of evolutionary conservation of imprinted genes

Clinical Epigenetics

Volumn 2, Issue 2, 2011, Pages 405-410

  Paulsen, Martina ^a  

^a NONE

Author keywords

CpG island; DNA methylation; Genomic imprinting; Mammalian evolution; Repetitive elements

Indexed keywords

CPG ISLAND; DLK1 GENE; DNA METHYLATION; DNA SEQUENCE; EPIGENETICS; GENE; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE INTERACTION; GENE MUTATION; GENE SILENCING; GENE STRUCTURE; GENETIC ASSOCIATION; GENETIC CODE; GENETIC CONSERVATION; GENETIC SELECTION; GENETIC VARIABILITY; GENOME IMPRINTING; HUMAN; IGF2 GENE; NONHUMAN; PRIORITY JOURNAL; REVIEW; SEQUENCE ANALYSIS; TANDEM REPEAT;

MAMMALIA;

EID: 84856282748     PISSN: 18687075     EISSN: 18687083     Source Type: Journal    
DOI: 10.1007/s13148-011-0047-1     Document Type: Review

References (28)

1. Anway MD, Cupp AS, Uzumcu M, Skinner MK (2005) Epigenetic transgenerational actions of endocrine disruptors and male fertility. Science 308:1466-1469 (Pubitemid 40791300)
2. Badcock C, Crespi B (2006) Imbalanced genomic imprinting in brain development: an evolutionary basis for the aetiology of autism. J Evol Biol 19:1007-1032
3. Bailey JA, Carrel L, Chakravarti A, Eichler EE (2000) Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: the Lyon repeat hypothesis. Proc Natl Acad Sci USA 97:6634-6639 (Pubitemid 30412766)
4. Bird AP (1986) CpG-rich islands and the function of DNA methylation. Nature 321:209-213 (Pubitemid 16016411)
5. Chaillet JR, Knoll JH, Horsthemke B, Lalande M (1991) The syntenic relationship between the critical deletion region for the Prader-Willi/Angelman syndromes and proximal mouse chromosome 7. Genomics 11:773-776
6. Davies W, Isles AR, Wilkinson LS (2005) Imprinted gene expression in the brain. Neurosci Biobehav Rev 29:421-430 (Pubitemid 40488207)
7. Fitzpatrick GV, Soloway PD, Higgins MJ (2002) Regional loss of imprinting and growth deficiency in mice with a targeted deletion of KvDMR1. Nat Genet 32:426-431 (Pubitemid 35266120)
8. Greally JM (2002) Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome. Proc Natl Acad Sci USA 99:327-332 (Pubitemid 34060362)
9. Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH et al (2010) A draft sequence of the Neandertal genome. Science 328:710-722
10. Gregg C, Zhang J, Weissbourd B, Luo S, Schroth GP, Haig D, Dulac C (2010) High-resolution analysis of parent-of-origin allelic expression in the mouse brain. Science 329:643-648
11. Hutter B, Bieg M, Helms V, Paulsen M (2010a) Divergence of imprinted genes during mammalian evolution. BMC Evol Biol 10:10
12. Hutter B, Bieg M, Helms V, Paulsen M (2010b) Imprinted genes show unique patterns of sequence conservation. BMC Genomics 11:649
13. Hutter B, Helms V, Paulsen M (2006) Tandem repeats in the CpG islands of imprinted genes. Genomics 88:323-332 (Pubitemid 44294744)
14. Kaneda A, Feinberg AP (2005) Loss of imprinting of IGF2: a common epigenetic modifier of intestinal tumor risk. Cancer Res 65:11236-11240 (Pubitemid 41821674)
15. Khoury H, Suarez-Saiz F, Wu S, Minden MD (2010) An upstream insulator regulates DLK1 imprinting in AML. Blood 115 (11):2260-2263
16. Kobayashi H, Hiura H, John RM, Sato A, Otsu E, Kobayashi N, Suzuki R, Suzuki F, Hayashi C, Utsunomiya T et al (2009) DNA methylation errors at imprinted loci after assisted conception originate in the parental sperm. Eur J Hum Genet 17:1582-1591
17. Lefebvre L, Viville S, Barton SC, Ishino F, Keverne EB, SuraniMA (1998) Abnormal maternal behaviour and growth retardation associated with loss of the imprinted gene Mest. Nat Genet 20:163-169 (Pubitemid 28455449)
18. Lin SP, Youngson N, Takada S, Seitz H, Reik W, Paulsen M, Cavaille J, Ferguson-Smith ACF (2003) Asymmetric regulation of imprinting on the maternal and paternal chromosomes at the Dlk1-Gtl2 imprinted cluster on mouse chromosome 12. Nat Genet 35:97-102 (Pubitemid 37048602)
19. Mancini-Dinardo D, Steele SJ, Levorse JM, Ingram RS, Tilghman SM (2006) Elongation of theKcnq1ot1 transcript is required for genomic imprinting of neighboring genes. Genes Dev 20:1268-1282 (Pubitemid 43727588)
20. Monk D, Moore GE (2004) Intrauterine growth restriction-genetic causes and consequences. Semin Fetal Neonatal Med 9:371-378
21. Moore T, Haig D (1991) Genomic imprinting in mammalian development: a parental tug-of-war. Trends Genet 7:45-49 (Pubitemid 121001901)
22. Neumann B, Kubicka P, Barlow DP (1995) Characteristics of imprinted genes. Nat Genet 9:12-13
23. Paulsen M, Khare T, Burgard C, Tierling S, Walter J (2005) Evolution of the Beckwith-Wiedemann syndrome region in vertebrates. Genome Res 15:146-153
24. Owen CM, Segars JH (2009) Imprinting disorders and assisted reproductive technology. Semin Reprod Med 27(5):417-428
25. Schofield PN, Lindham S, Engström W (1989) Analysis of gene dosage on chromosome 11 in children suffering from Beckwith-Wiedemann syndrome. Eur J Pediatr 148:320-324 (Pubitemid 19031038)
26. Sleutels F, Zwart R, Barlow DP (2002) The non-coding Air RNA is required for silencing autosomal imprinted genes. Nature 415:810-813 (Pubitemid 34150505)
27. Steinhoff C, Paulsen M, Kielbasa S, Walter J, Vingron M (2009) Expression profile and transcription factor binding site exploration of imprinted genes in human and mouse. BMC Genomics 10:15
28. Walter J, Hutter B, Khare T, Paulsen M (2006) Repetitive elements in imprinted genes. Cytogenet Genome Res 113:109-115