메뉴 건너뛰기




Volumn 8, Issue 1, 2012, Pages 82-85

Selection on codon usage and base composition in Drosophila americana

Author keywords

Biased gene conversion; Codon usage; Drosophila americana; Population expansion

Indexed keywords

DATA SET; DEMOGRAPHIC HISTORY; FLY; GENE TRANSFER; MAXIMUM LIKELIHOOD ANALYSIS; NATURAL SELECTION; POLYMORPHISM; POPULATION GROWTH;

EID: 84856281452     PISSN: 17449561     EISSN: 1744957X     Source Type: Journal    
DOI: 10.1098/rsbl.2011.0601     Document Type: Article
Times cited : (10)

References (23)
  • 1
    • 58549090911 scopus 로고    scopus 로고
    • Selection on codon bias
    • doi:10.1146/Annurev.Genet.42.110807.091442
    • Hershberg, R. & Petrov, D. A. 2008 Selection on codon bias. Annu. Rev. Genet. 42, 287-299. (doi:10.1146/Annurev.Genet.42.110807.091442)
    • (2008) Annu. Rev. Genet. , vol.42 , pp. 287-299
    • Hershberg, R.1    Petrov, D.A.2
  • 2
    • 0028797897 scopus 로고
    • Inferring weak selection from patterns of polymorphism and divergence at silent sites in Drosophila DNA
    • Akashi, H. 1995 Inferring weak selection from patterns of polymorphism and divergence at silent sites in Drosophila DNA. Genetics 139, 1067-1076.
    • (1995) Genetics , vol.139 , pp. 1067-1076
    • Akashi, H.1
  • 3
    • 1142302213 scopus 로고    scopus 로고
    • Selection on codon usage in Drosophila Americana
    • doi:10.1016/J.Cub.2003.12.055
    • Maside, X. L., Lee, A. W. S. & Charlesworth, B. 2004 Selection on codon usage in Drosophila americana. Curr. Biol. 14, 150-154. (doi:10.1016/J.Cub.2003.12.055)
    • (2004) Curr. Biol. , vol.14 , pp. 150-154
    • Maside, X.L.1    Lee, A.W.S.2    Charlesworth, B.3
  • 4
    • 70649090279 scopus 로고    scopus 로고
    • Estimating selection intensity on synonymous codon usage in a nonequilibrium population
    • doi:10.1534/Genetics.109.101782
    • Zeng, K. & Charlesworth, B. 2009 Estimating selection intensity on synonymous codon usage in a nonequilibrium population. Genetics 183, 651-662. (doi:10.1534/Genetics.109.101782)
    • (2009) Genetics , vol.183 , pp. 651-662
    • Zeng, K.1    Charlesworth, B.2
  • 5
    • 27844577664 scopus 로고    scopus 로고
    • Intragenic Hill-Robertson interference influences selection intensity on synonymous mutations in Drosophila
    • doi:10.1093/molbev/msi246
    • Comeron, J. M. & Guthrie, T. B. 2005 Intragenic Hill-Robertson interference influences selection intensity on synonymous mutations in Drosophila. Mol. Biol. Evol. 22, 2519-2530. (doi:10.1093/molbev/msi246)
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 2519-2530
    • Comeron, J.M.1    Guthrie, T.B.2
  • 6
    • 79955426758 scopus 로고    scopus 로고
    • Determinants of synonymous and nonsynonymous variability in three species of Drosophila
    • doi:10.1093/molbev/msq354
    • Haddrill, P. R., Zeng, K. & Charlesworth, B. 2011 Determinants of synonymous and nonsynonymous variability in three species of Drosophila. Mol. Biol. Evol. 28, 1731-1743. (doi:10.1093/molbev/msq354)
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 1731-1743
    • Haddrill, P.R.1    Zeng, K.2    Charlesworth, B.3
  • 7
    • 58449121403 scopus 로고    scopus 로고
    • Estimating translational selection in eukaryotic genomes
    • doi:10.1093/Molbev/Msn272
    • dos Reis, M. & Wernisch, L. 2009 Estimating translational selection in eukaryotic genomes. Mol. Biol. Evol. 26, 451-461. (doi:10.1093/Molbev/Msn272)
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 451-461
    • Dos Reis, M.1    Wernisch, L.2
  • 8
    • 0038543069 scopus 로고    scopus 로고
    • Biased gene conversion: Implications for genome and sex evolution
    • doi:10.1016/S0168-9525(03)00116-1
    • Marais, G. 2003 Biased gene conversion: implications for genome and sex evolution. Trends Genet. 19, 330-338. (doi:10.1016/S0168-9525(03)00116-1)
    • (2003) Trends Genet. , vol.19 , pp. 330-338
    • Marais, G.1
  • 9
    • 33644780844 scopus 로고    scopus 로고
    • GC-biased segregation of noncoding polymorphisms in Drosophila
    • doi:10.1534/genetics.105.046524
    • Galtier, N., Bazin, E. & Bierne, N. 2006 GC-biased segregation of noncoding polymorphisms in Drosophila. Genetics 172, 221-228. (doi:10.1534/genetics.105. 046524)
    • (2006) Genetics , vol.172 , pp. 221-228
    • Galtier, N.1    Bazin, E.2    Bierne, N.3
  • 10
    • 46949087998 scopus 로고    scopus 로고
    • Non-neutral processes drive the nucleotide composition of noncoding sequences in Drosophila
    • doi:10.1098/Rsbl.2008.0174
    • Haddrill, P. R. & Charlesworth, B. 2008 Non-neutral processes drive the nucleotide composition of noncoding sequences in Drosophila. Biol. Lett. 4, 438-441. (doi:10.1098/Rsbl.2008.0174)
    • (2008) Biol. Lett. , vol.4 , pp. 438-441
    • Haddrill, P.R.1    Charlesworth, B.2
  • 11
    • 1242352089 scopus 로고    scopus 로고
    • Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks
    • doi:10. 1093/molbev/msg236
    • Tamura, K., Subramanian, S. & Kumar, S. 2004 Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. Mol. Biol. Evol. 21, 36-44. (doi:10. 1093/molbev/msg236)
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 36-44
    • Tamura, K.1    Subramanian, S.2    Kumar, S.3
  • 12
    • 0035157374 scopus 로고    scopus 로고
    • Inferring parameters of mutation, selection and demography from patterns of synonymous site evolution in Drosophila
    • McVean, G. A. & Vieira, J. 2001 Inferring parameters of mutation, selection and demography from patterns of synonymous site evolution in Drosophila. Genetics 157, 245-257.
    • (2001) Genetics , vol.157 , pp. 245-257
    • McVean, G.A.1    Vieira, J.2
  • 13
    • 37249045872 scopus 로고    scopus 로고
    • Variable strength of translational selection among 12 Drosophila species
    • doi:10.1534/genetics.107.070466
    • Heger, A.& Ponting, C. P. 2007 Variable strength of translational selection among 12 Drosophila species. Genetics 177, 1337-1348. (doi:10.1534/genetics.107.070466)
    • (2007) Genetics , vol.177 , pp. 1337-1348
    • Heger, A.1    Ponting, C.P.2
  • 14
    • 0000783306 scopus 로고
    • The virilis species group
    • (eds M. Ahsburner, H. L. Carson & J. N. Thompson). New York, NY: Academic Press
    • Throckmorton, L. H. 1982 The virilis species group. In The genetics and biology of Drosophila (eds M. Ahsburner, H. L. Carson & J. N. Thompson), pp. 227-296. New York, NY: Academic Press.
    • (1982) The Genetics and Biology of Drosophila , pp. 227-296
    • Throckmorton, L.H.1
  • 15
    • 0035020912 scopus 로고    scopus 로고
    • Evidence for selection at the fused1 locus of Drosophila Americana
    • Vieira, J., McAllister, B. F. & Charlesworth, B. 2001 Evidence for selection at the fused1 locus of Drosophila americana. Genetics 158, 279-290.
    • (2001) Genetics , vol.158 , pp. 279-290
    • Vieira, J.1    McAllister, B.F.2    Charlesworth, B.3
  • 16
    • 0036008812 scopus 로고    scopus 로고
    • Chromosomal and allelic variation in Drosophila Americana: Selective maintenance of a chromosomal cline
    • doi:10.1139/g01-112
    • McAllister, B. F. 2002 Chromosomal and allelic variation in Drosophila americana: selective maintenance of a chromosomal cline. Genome 45, 13-21. (doi:10.1139/g01-112)
    • (2002) Genome , vol.45 , pp. 13-21
    • McAllister, B.F.1
  • 17
    • 34548395899 scopus 로고    scopus 로고
    • Patterns of molecular variation and evolution in Drosophila Americana and its relatives
    • doi:10.1534/Genetics.107.071191
    • Maside, X. & Charlesworth, B. 2007 Patterns of molecular variation and evolution in Drosophila americana and its relatives. Genetics 176, 2293-2305. (doi:10.1534/Genetics.107.071191)
    • (2007) Genetics , vol.176 , pp. 2293-2305
    • Maside, X.1    Charlesworth, B.2
  • 18
    • 33745615839 scopus 로고    scopus 로고
    • On the location of the gene(s) harbouring the advantageous variant that maintains the X4 fusion of Drosophila Americana
    • doi:10. 1017/S0016672306008147
    • Vieira, C. P., Almeida, A., Dias, J. D. & Vieira, J. 2006 On the location of the gene(s) harbouring the advantageous variant that maintains the X4 fusion of Drosophila americana. Genet. Res. 87, 163-174. (doi:10. 1017/S0016672306008147)
    • (2006) Genet. Res. , vol.87 , pp. 163-174
    • Vieira, C.P.1    Almeida, A.2    Dias, J.D.3    Vieira, J.4
  • 19
    • 76749119389 scopus 로고    scopus 로고
    • Studying patterns of recent evolution at synonymous sites and intronic sites in Drosophila melanogaster
    • doi:10.1007/S00239-009-9314-6
    • Zeng, K. & Charlesworth, B. 2010 Studying patterns of recent evolution at synonymous sites and intronic sites in Drosophila melanogaster. J. Mol. Evol. 70, 116-128. (doi:10.1007/S00239-009-9314-6)
    • (2010) J. Mol. Evol. , vol.70 , pp. 116-128
    • Zeng, K.1    Charlesworth, B.2
  • 20
    • 67149120080 scopus 로고    scopus 로고
    • Reduced effectiveness of selection caused by a lack of recombination
    • doi:10.1016/J.Cub.2009.02.039
    • Betancourt, A. J., Welch, J. J. & Charlesworth, B. 2009 Reduced effectiveness of selection caused by a lack of recombination. Curr. Biol. 19, 655-660. (doi:10.1016/J.Cub.2009.02.039)
    • (2009) Curr. Biol. , vol.19 , pp. 655-660
    • Betancourt, A.J.1    Welch, J.J.2    Charlesworth, B.3
  • 21
    • 0024762773 scopus 로고
    • The effect of change in population size on DNA polymorphism
    • Tajima, F. 1989 The effect of change in population size on DNA polymorphism. Genetics 123, 597-601.
    • (1989) Genetics , vol.123 , pp. 597-601
    • Tajima, F.1
  • 22
    • 49749083390 scopus 로고    scopus 로고
    • Positive and negative selection on noncoding DNA in Drosophila simulans
    • doi:10.1093/Molbev/Msn125
    • Haddrill, P. R., Bachtrog, D. & Andolfatto, P. 2008 Positive and negative selection on noncoding DNA in Drosophila simulans. Mol. Biol. Evol. 25, 1825-1834. (doi:10.1093/Molbev/Msn125)
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1825-1834
    • Haddrill, P.R.1    Bachtrog, D.2    Andolfatto, P.3
  • 23
    • 67650064592 scopus 로고    scopus 로고
    • Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines
    • doi:10.1101/Gr.091231.109
    • Keightley, P. D., Trivedi, U., Thomson, M., Oliver, F., Kumar, S. & Blaxter, M. L. 2009 Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. Genome Res. 19, 1195-1201. (doi:10.1101/Gr.091231.109)
    • (2009) Genome Res. , vol.19 , pp. 1195-1201
    • Keightley, P.D.1    Trivedi, U.2    Thomson, M.3    Oliver, F.4    Kumar, S.5    Blaxter, M.L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.