-
1
-
-
30844443758
-
Herpesviral protein networks and their interaction with the human proteome
-
Uetz, P., Dong, Y. A., Zeretzke, C., Atzler, C., Baiker, A., Berger, B., Rajagopala, S. V., Roupelieva, M., Rose, D., Fossum, E., and Haas, J. (2006) Herpesviral protein networks and their interaction with the human proteome, Science 311, 239-242.
-
(2006)
Science
, vol.311
, pp. 239-242
-
-
Uetz, P.1
Dong, Y.A.2
Zeretzke, C.3
Atzler, C.4
Baiker, A.5
Berger, B.6
Rajagopala, S.V.7
Roupelieva, M.8
Rose, D.9
Fossum, E.10
Haas, J.11
-
2
-
-
34250675300
-
Epstein-Barr virus and virus human protein interaction maps
-
Calderwood, M. A., Venkatesan, K., Xing, L., Chase, M. R., Vazquez, A., Holthaus, A. M., Ewence, A. E., Li, N., Hirozane-Kishikawa, T., Hill, D. E., Vidal, M., Kieff, E., and Johannsen, E. (2007) Epstein-Barr virus and virus human protein interaction maps, Proc Natl Acad Sci USA 104, 7606-7611.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 7606-7611
-
-
Calderwood, M.A.1
Venkatesan, K.2
Xing, L.3
Chase, M.R.4
Vazquez, A.5
Holthaus, A.M.6
Ewence, A.E.7
Li, N.8
Hirozane-Kishikawa, T.9
Hill, D.E.10
Vidal, M.11
Kieff, E.12
Johannsen, E.13
-
3
-
-
52949130695
-
Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication
-
Konig, R., Zhou, Y., Elleder, D., Diamond, T. L., Bonamy, G. M., Irelan, J. T., Chiang, C. Y., Tu, B. P., De Jesus, P. D., Lilley, C. E., Seidel, S., Opaluch, A. M., Caldwell, J. S., Weitzman, M. D., Kuhen, K. L., Bandyopadhyay, S., Ideker, T., Orth, A. P., Miraglia, L. J., Bushman, F. D., Young, J. A., and Chanda, S. K. (2008) Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication, Cell 135, 49-60.
-
(2008)
Cell
, vol.135
, pp. 49-60
-
-
Konig, R.1
Zhou, Y.2
Elleder, D.3
Diamond, T.L.4
Bonamy, G.M.5
Irelan, J.T.6
Chiang, C.Y.7
Tu, B.P.8
De Jesus, P.D.9
Lilley, C.E.10
Seidel, S.11
Opaluch, A.M.12
Caldwell, J.S.13
Weitzman, M.D.14
Kuhen, K.L.15
Bandyopadhyay, S.16
Ideker, T.17
Orth, A.P.18
Miraglia, L.J.19
Bushman, F.D.20
Young, J.A.21
Chanda, S.K.22
more..
-
4
-
-
55549117151
-
Hepatitis C virus infection protein network
-
de Chassey, B., Navratil, V., Tafforeau, L., Hiet, M. S., Aublin-Gex, A., Agaugue, S., Meiffren, G., Pradezynski, F., Faria, B. F., Chantier, T., Le Breton, M., Pellet, J., Davoust, N., Mangeot, P. E., Chaboud, A., Penin, F., Jacob, Y., Vidalain, P. O., Vidal, M., Andre, P., Rabourdin-Combe, C., and Lotteau, V. (2008) Hepatitis C virus infection protein network, Mol Syst Biol 4, 230.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 230
-
-
De Chassey, B.1
Navratil, V.2
Tafforeau, L.3
Hiet, M.S.4
Aublin-Gex, A.5
Agaugue, S.6
Meiffren, G.7
Pradezynski, F.8
Faria, B.F.9
Chantier, T.10
Le Breton, M.11
Pellet, J.12
Davoust, N.13
Mangeot, P.E.14
Chaboud, A.15
Penin, F.16
Jacob, Y.17
Vidalain, P.O.18
Vidal, M.19
Andre, P.20
Rabourdin-Combe, C.21
Lotteau, V.22
more..
-
5
-
-
70349931825
-
Analysis of vaccinia virus-host protein-protein interactions: Validations of yeast two-hybrid screenings
-
Zhang, L., Villa, N. Y., Rahman, M. M., Smallwood, S., Shattuck, D., Neff, C., Dufford, M., Lanchbury, J. S., Labaer, J., and McFadden, G. (2009) Analysis of vaccinia virus-host protein-protein interactions: validations of yeast two-hybrid screenings, J Proteome Res 8, 4311-4318.
-
(2009)
J Proteome Res
, vol.8
, pp. 4311-4318
-
-
Zhang, L.1
Villa, N.Y.2
Rahman, M.M.3
Smallwood, S.4
Shattuck, D.5
Neff, C.6
Dufford, M.7
Lanchbury, J.S.8
Labaer, J.9
McFadden, G.10
-
6
-
-
68049131345
-
Connecting viral with cellular interactomes
-
Bailer, S. M., and Haas, J. (2009) Connecting viral with cellular interactomes, Curr Opin Microbiol 12, 453-459.
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 453-459
-
-
Bailer, S.M.1
Haas, J.2
-
7
-
-
0024406857
-
A novel genetic system to detect protein-protein interactions
-
Fields, S., and Song, O. (1989) A novel genetic system to detect protein-protein interactions, Nature 340, 245-246.
-
(1989)
Nature
, vol.340
, pp. 245-246
-
-
Fields, S.1
Song, O.2
-
8
-
-
0030963019
-
Toward a functional analysis of the yeast genome through exhaustive two- hybrid screens
-
Fromont-Racine, M., Rain, J. C., and Legrain, P. (1997) Toward a functional analysis of the yeast genome through exhaustive two- hybrid screens, Nat Genet 16, 277-282.
-
(1997)
Nat Genet
, vol.16
, pp. 277-282
-
-
Fromont-Racine, M.1
Rain, J.C.2
Legrain, P.3
-
9
-
-
58149178566
-
VirHostNet: A knowledge base for the management and the analysis of proteome-wide virushost interaction networks
-
Navratil, V., de Chassey, B., Meyniel, L., Delmotte, S., Gautier, C., Andre, P., Lotteau, V., and Rabourdin-Combe, C. (2009) VirHostNet: a knowledge base for the management and the analysis of proteome-wide virushost interaction networks, Nucleic Acids Res 37, D661-D668.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Navratil, V.1
De Chassey, B.2
Meyniel, L.3
Delmotte, S.4
Gautier, C.5
Andre, P.6
Lotteau, V.7
Rabourdin-Combe, C.8
-
10
-
-
0030698842
-
Stable DNA-binding yeast vector allowing high-bait expression for use in the twohybrid system
-
820
-
Louvet, O., Doignon, F., and Crouzet, M. (1997) Stable DNA-binding yeast vector allowing high-bait expression for use in the twohybrid system, Biotechniques 23, 816-818, 820.
-
(1997)
Biotechniques
, vol.23
, pp. 816-818
-
-
Louvet, O.1
Doignon, F.2
Crouzet, M.3
-
11
-
-
43249084547
-
Mitochondrial dysfunction in lyssavirus-induced apoptosis
-
Gholami, A., Kassis, R., Real, E., Delmas, O., Guadagnini, S., Larrous, F., Obach, D., Prevost, M. C., Jacob, Y., and Bourhy, H. (2008) Mitochondrial dysfunction in lyssavirus-induced apoptosis, J Virol 82, 4774-4784.
-
(2008)
J Virol
, vol.82
, pp. 4774-4784
-
-
Gholami, A.1
Kassis, R.2
Real, E.3
Delmas, O.4
Guadagnini, S.5
Larrous, F.6
Obach, D.7
Prevost, M.C.8
Jacob, Y.9
Bourhy, H.10
-
12
-
-
0028276805
-
Specifi c association between the human DNA repair proteins XPA and ERCC1
-
Li, L., Elledge, S. J., Peterson, C. A., Bales, E. S., and Legerski, R. J. (1994) Specifi c association between the human DNA repair proteins XPA and ERCC1, Proc Natl Acad Sci USA 91, 5012-5016.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 5012-5016
-
-
Li, L.1
Elledge, S.J.2
Peterson, C.A.3
Bales, E.S.4
Legerski, R.J.5
-
13
-
-
0030455820
-
Genomic libraries and a host strain designed for highly effi cient two-hybrid selection in yeast
-
James, P., Halladay, J., and Craig, E. A. (1996) Genomic libraries and a host strain designed for highly effi cient two-hybrid selection in yeast, Genetics 144, 1425-1436.
-
(1996)
Genetics
, vol.144
, pp. 1425-1436
-
-
James, P.1
Halladay, J.2
Craig, E.A.3
-
14
-
-
0027496935
-
The p21 Cdkinteracting protein Cip1 is a potent inhibitor of G1 cyclin-dependent kinases
-
Harper, J. W., Adami, G. R., Wei, N., Keyomarsi, K., and Elledge, S. J. (1993) The p21 Cdkinteracting protein Cip1 is a potent inhibitor of G1 cyclin-dependent kinases, Cell 75, 805-816.
-
(1993)
Cell
, vol.75
, pp. 805-816
-
-
Harper, J.W.1
Adami, G.R.2
Wei, N.3
Keyomarsi, K.4
Elledge, S.J.5
-
15
-
-
0032078981
-
A recombination based method to rapidly assess specifi city of twohybrid clones in yeast
-
Petermann, R., Mossier, B. M., Aryee, D. N., and Kovar, H. (1998) A recombination based method to rapidly assess specifi city of twohybrid clones in yeast, Nucleic Acids Res 26, 2252-2253.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 2252-2253
-
-
Petermann, R.1
Mossier, B.M.2
Aryee, D.N.3
Kovar, H.4
-
16
-
-
75549088955
-
ViralORFeome: An integrated database to generate a versatile collection of viral ORFs
-
Pellet, J., Tafforeau, L., Lucas-Hourani, M., Navratil, V., Meyniel, L., Achaz, G., Guironnet-Paquet, A., Aublin-Gex, A., Caignard, G., Cassonnet, P., Chaboud, A., Chantier, T., Deloire, A., Demeret, C., Le Breton, M., Neveu, G., Jacotot, L., Vaglio, P., Delmotte, S., Gautier, C., Combet, C., Deleage, G., Favre, M., Tangy, F., Jacob, Y., Andre, P., Lotteau, V., Rabourdin-Combe, C., and Vidalain, P. O. (2010) ViralORFeome: an integrated database to generate a versatile collection of viral ORFs, Nucleic Acids Res 38, D371-D378.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Pellet, J.1
Tafforeau, L.2
Lucas-Hourani, M.3
Navratil, V.4
Meyniel, L.5
Achaz, G.6
Guironnet-Paquet, A.7
Aublin-Gex, A.8
Caignard, G.9
Cassonnet, P.10
Chaboud, A.11
Chantier, T.12
Deloire, A.13
Demeret, C.14
Le Breton, M.15
Neveu, G.16
Jacotot, L.17
Vaglio, P.18
Delmotte, S.19
Gautier, C.20
Combet, C.21
Deleage, G.22
Favre, M.23
Tangy, F.24
Jacob, Y.25
Andre, P.26
Lotteau, V.27
Rabourdin-Combe, C.28
Vidalain, P.O.29
more..
-
17
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
Li, S., Armstrong, C. M., Bertin, N., Ge, H., Milstein, S., Boxem, M., Vidalain, P. O., Han, J. D., Chesneau, A., Hao, T., Goldberg, D. S., Li, N., Martinez, M., Rual, J. F., Lamesch, P., Xu, L., Tewari, M., Wong, S. L., Zhang, L. V., Berriz, G. F., Jacotot, L., Vaglio, P., Reboul, J., Hirozane-Kishikawa, T., Li, Q., Gabel, H. W., Elewa, A., Baumgartner, B., Rose, D. J., Yu, H., Bosak, S., Sequerra, R., Fraser, A., Mango, S. E., Saxton, W. M., Strome, S., Van Den Heuvel, S., Piano, F., Vandenhaute, J., Sardet, C., Gerstein, M., Doucette-Stamm, L., Gunsalus, K. C., Harper, J. W., Cusick, M. E., Roth, F. P., Hill, D. E., and Vidal, M. (2004) A map of the interactome network of the metazoan C. elegans, Science 303, 540-543.
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
Boxem, M.6
Vidalain, P.O.7
Han, J.D.8
Chesneau, A.9
Hao, T.10
Goldberg, D.S.11
Li, N.12
Martinez, M.13
Rual, J.F.14
Lamesch, P.15
Xu, L.16
Tewari, M.17
Wong, S.L.18
Zhang, L.V.19
Berriz, G.F.20
Jacotot, L.21
Vaglio, P.22
Reboul, J.23
Hirozane-Kishikawa, T.24
Li, Q.25
Gabel, H.W.26
Elewa, A.27
Baumgartner, B.28
Rose, D.J.29
Yu, H.30
Bosak, S.31
Sequerra, R.32
Fraser, A.33
Mango, S.E.34
Saxton, W.M.35
Strome, S.36
Van Den Heuvel, S.37
Piano, F.38
Vandenhaute, J.39
Sardet, C.40
Gerstein, M.41
Doucette-Stamm, L.42
Gunsalus, K.C.43
Harper, J.W.44
Cusick, M.E.45
Roth, F.P.46
Hill, D.E.47
Vidal, M.48
more..
-
18
-
-
75849118862
-
PISTil: A pipeline for yeast two-hybrid Interaction Sequence Tags identifi cation and analysis
-
Pellet, J., Meyniel, L., Vidalain, P. O., de Chassey, B., Tafforeau, L., Lotteau, V., Rabourdin-Combe, C., and Navratil, V. (2009) pISTil: a pipeline for yeast two-hybrid Interaction Sequence Tags identifi cation and analysis, BMC research notes 2, 220.
-
(2009)
BMC Research Notes
, vol.2
, pp. 220
-
-
Pellet, J.1
Meyniel, L.2
Vidalain, P.O.3
De Chassey, B.4
Tafforeau, L.5
Lotteau, V.6
Rabourdin-Combe, C.7
Navratil, V.8
-
19
-
-
34249107988
-
The minimum information required for reporting a molecular interaction experiment (MIMIx)
-
Orchard, S., Salwinski, L., Kerrien, S., Montecchi-Palazzi, L., Oesterheld, M., Stumpflen, V., Ceol, A., Chatr-aryamontri, A., Armstrong, J., Woollard, P., Salama, J. J., Moore, S., Wojcik, J., Bader, G. D., Vidal, M., Cusick, M. E., Gerstein, M., Gavin, A. C., Superti-Furga, G., Greenblatt, J., Bader, J., Uetz, P., Tyers, M., Legrain, P., Fields, S., Mulder, N., Gilson, M., Niepmann, M., Burgoon, L., De Las Rivas, J., Prieto, C., Perreau, V. M., Hogue, C., Mewes, H. W., Apweiler, R., Xenarios, I., Eisenberg, D., Cesareni, G., and Hermjakob, H. (2007) The minimum information required for reporting a molecular interaction experiment (MIMIx), Nat Biotechnol 25, 894-898.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 894-898
-
-
Orchard, S.1
Salwinski, L.2
Kerrien, S.3
Montecchi-Palazzi, L.4
Oesterheld, M.5
Stumpflen, V.6
Ceol, A.7
Chatr-Aryamontri, A.8
Armstrong, J.9
Woollard, P.10
Salama, J.J.11
Moore, S.12
Wojcik, J.13
Bader, G.D.14
Vidal, M.15
Cusick, M.E.16
Gerstein, M.17
Gavin, A.C.18
Superti-Furga, G.19
Greenblatt, J.20
Bader, J.21
Uetz, P.22
Tyers, M.23
Legrain, P.24
Fields, S.25
Mulder, N.26
Gilson, M.27
Niepmann, M.28
Burgoon, L.29
De Las Rivas, J.30
Prieto, C.31
Perreau, V.M.32
Hogue, C.33
Mewes, H.W.34
Apweiler, R.35
Xenarios, I.36
Eisenberg, D.37
Cesareni, G.38
Hermjakob, H.39
more..
-
20
-
-
0033990060
-
The Staden package, 1998
-
Staden, R., Beal, K. F., and Bonfi eld, J. K. (2000) The Staden package, 1998, Methods Mol Biol 132, 115-130.
-
(2000)
Methods Mol Biol
, vol.132
, pp. 115-130
-
-
Staden, R.1
Beal, K.F.2
Bonfield, J.K.3
-
21
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
22
-
-
0029294145
-
Modifi cations to the ADH1 promoter of Saccharomyces cerevisiae for effi cient production of heterologous proteins
-
Ruohonen, L., Aalto, M. K., and Keranen, S. (1995) Modifi cations to the ADH1 promoter of Saccharomyces cerevisiae for effi cient production of heterologous proteins, J Biotechnol 39, 193-203.
-
(1995)
J Biotechnol
, vol.39
, pp. 193-203
-
-
Ruohonen, L.1
Aalto, M.K.2
Keranen, S.3
-
23
-
-
0033676098
-
DNA cloning using in vitro site-specifi c recombination
-
Hartley, J. L., Temple, G. F., and Brasch, M. A. (2000) DNA cloning using in vitro site-specifi c recombination, Genome Res 10, 1788-1795.
-
(2000)
Genome Res
, vol.10
, pp. 1788-1795
-
-
Hartley, J.L.1
Temple, G.F.2
Brasch, M.A.3
-
24
-
-
0033732564
-
GATEWAY recombinational cloning: Application to the cloning of large numbers of open reading frames or ORFeomes
-
Walhout, A. J., Temple, G. F., Brasch, M. A., Hartley, J. L., Lorson, M. A., van den Heuvel, S., and Vidal, M. (2000) GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes, Methods Enzymol 328, 575-592.
-
(2000)
Methods Enzymol
, vol.328
, pp. 575-592
-
-
Walhout, A.J.1
Temple, G.F.2
Brasch, M.A.3
Hartley, J.L.4
Lorson, M.A.5
Van Den Heuvel, S.6
Vidal, M.7
-
25
-
-
0025352093
-
Efficient expression of the Saccharomyces cerevisiae glycolytic gene ADH1 is dependent upon a cis-acting regulatory element (UASRPG) found initially in genes encoding ribosomal proteins
-
Tornow, J., and Santangelo, G. M. (1990) Efficient expression of the Saccharomyces cerevisiae glycolytic gene ADH1 is dependent upon a cis-acting regulatory element (UASRPG) found initially in genes encoding ribosomal proteins, Gene 90, 79-85.
-
(1990)
Gene
, vol.90
, pp. 79-85
-
-
Tornow, J.1
Santangelo, G.M.2
-
26
-
-
0028124463
-
The two-hybrid system: An assay for protein-protein interactions
-
Fields, S., and Sternglanz, R. (1994) The two-hybrid system: an assay for protein-protein interactions, Trends Genet 10, 286-292.
-
(1994)
Trends Genet
, vol.10
, pp. 286-292
-
-
Fields, S.1
Sternglanz, R.2
-
27
-
-
0027251721
-
The retinoblastoma protein associates with the protein phosphatase type 1 catalytic subunit
-
Durfee, T., Becherer, K., Chen, P. L., Yeh, S. H., Yang, Y., Kilburn, A. E., Lee, W. H., and Elledge, S. J. (1993) The retinoblastoma protein associates with the protein phosphatase type 1 catalytic subunit, Genes Dev 7, 555-569.
-
(1993)
Genes Dev
, vol.7
, pp. 555-569
-
-
Durfee, T.1
Becherer, K.2
Chen, P.L.3
Yeh, S.H.4
Yang, Y.5
Kilburn, A.E.6
Lee, W.H.7
Elledge, S.J.8
-
28
-
-
0035749611
-
Development of an optimized interaction-mating protocol for large-scale yeast two-hybrid analyses
-
RESEARCH0052
-
Soellick, T. R., and Uhrig, J. F. (2001) Development of an optimized interaction-mating protocol for large-scale yeast two-hybrid analyses, Genome Biol 2, RESEARCH0052.
-
(2001)
Genome Biol
, vol.2
-
-
Soellick, T.R.1
Uhrig, J.F.2
-
29
-
-
1542345539
-
Increasing specifi city in highthroughput yeast two-hybrid experiments
-
Vidalain, P. O., Boxem, M., Ge, H., Li, S., and Vidal, M. (2004) Increasing specifi city in highthroughput yeast two-hybrid experiments, Methods 32, 363-370.
-
(2004)
Methods
, vol.32
, pp. 363-370
-
-
Vidalain, P.O.1
Boxem, M.2
Ge, H.3
Li, S.4
Vidal, M.5
|