Iodination on tyrosine residues during oxidation with sodium periodate in solid phase extraction of n-linked glycopeptides

Journal of the American Society for Mass Spectrometry

Volumn 23, Issue 1, 2012, Pages 68-75

  Cohen, Alejandro M ^a   Kostyleva, Ripsik ^a   Chisholm, Kenneth A ^a   Pinto, Devanand M ^a  

^a NATIONAL RESEARCH COUNCIL CANADA   (Canada)

Author keywords

Glycoproteomics; Hydrazide modified solid phase extraction; Iodination; N linked glycoproteins; Oxidation; Sodium periodate

Indexed keywords

GLYCOPROTEOMICS; HYDRAZIDE MODIFIED SOLID PHASE EXTRACTION; IODINATION; N-LINKED; SODIUM PERIODATE;

AMINO ACIDS; BODY FLUIDS; CARBONIC ANHYDRASE; EXPERIMENTS; MONITORING; OXIDATION; PEPTIDES; SEARCH ENGINES;

EXTRACTION;

BOVINE SERUM ALBUMIN; CARBONATE DEHYDRATASE; HYDRAZIDE; IODOTYROSINE; ION; PEPTIDE; PERIODATE SODIUM; TYROSINE;

ARTICLE; BLOOD SAMPLING; CONTROLLED STUDY; DATA BASE; ELECTROSPRAY MASS SPECTROMETRY; EXTRACTION AND EXTRACTS; GLYCOPROTEOMICS; INFORMATION RETRIEVAL; IODINATION; LIQUID CHROMATOGRAPHY; MEASUREMENT; NUCLEOTIDE SEQUENCE; OXIDATION; PROTEOMICS; SIGNAL PROCESSING; SOLID PHASE EXTRACTION OF N LINKED GLYCOPEPTIDE; TANDEM MASS SPECTROMETRY;

AMINO ACID SEQUENCE; ANIMALS; CARBONIC ANHYDRASES; CATTLE; GLYCOPEPTIDES; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; PERIODIC ACID; PROTEOMICS; SERUM ALBUMIN, BOVINE; SOLID PHASE EXTRACTION; TYROSINE;

BOVINAE;

EID: 84856168003     PISSN: 10440305     EISSN: 18791123     Source Type: Journal    
DOI: 10.1007/s13361-011-0262-1     Document Type: Article

References (14)

1. Boland, M., Rudd, P.M.: Disease related glycosylation changes and biomarker discovery: Challenges and possibilities in an emerging field. Editorial. Dis Markers 25(4/5), 189-192 (2008)
2. Hirabayashi, J., Hashidate, T., Kasai, K.: Glyco-catch method: A lectin affinity technique for glycoproteomics. J. Biomol. Tech. 13(4), 205-218 (2002)
3. Zhang, H., Li, X.J., Martin, D.B., Aebersold, R.: Identification and quantification of n-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat. Biotechnol. 21(6), 660-666 (2003) (Pubitemid 36638093)
4. Zhang, H., Loriaux, P., Eng, J., Campbell, D., Keller, A., Moss, P., Bonneau, R., Zhang, N., Zhou, Y., Wollscheid, B., Cooke, K., Yi, E.C., Lee, H., Peskind, E.R., Zhang, J., Smith, R.D., Aebersold, R.: Unipep-a database for human n-linked glycosites: A resource for biomarker discovery. Genome Biol. 7(8), R73 (2006) (Pubitemid 44468851)
5. Zou, Z., Ibisate, M., Zhou, Y., Aebersold, R., Xia, Y., Zhang, H.: Synthesis and evaluation of superparamagnetic silica particles for extraction of glycopeptides in the microtiter plate format. Anal. Chem. 80(4), 1228-1234 (2008) (Pubitemid 351272359)
6. Berven, F.S., Ahmad, R., Clauser, K.R., Carr, S.A.: Optimizing performance of glycopeptide capture for plasma proteomics. J. Proteome Res. 9(4), 1706-1715 (2010)
7. Chelius, D., Shaler, T.A.: Capture of peptides with N-terminal serine and threonine: A sequence-specific chemical method for peptide mixture simplification. Bioconj. Chem. 14(1), 205-211 (2003) (Pubitemid 36169034)
8. Tian, Y., Zhou, Y., Elliott, S., Aebersold, R., Zhang, H.: Solid-phase extraction of n-linked glycopeptides. Nat. Protoc. 2(2), 334-339 (2007) (Pubitemid 47040048)
9. Kim, S., Na, S., Sim, J.W., Park, H., Jeong, J., Kim, H., Seo, Y., Seo, J., Lee, K.J., Paek, E.: Modi: A powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra. Nucleic Acids Res. 34, W258-W263 (2006). Web Server issue (Pubitemid 44529775)
10. Na, S., Paek, E.: Prediction of novel modifications by unrestrictive search of tandem mass spectra. J. Proteome Res. 8(10), 4418-4427 (2009)
11. Craig, R., Beavis, R.C.: Tandem: Matching proteins with tandem mass spectra. Bioinformatics 20(9), 1466-1467 (2004) (Pubitemid 38931421)
12. Perkins, D.N., Pappin, D.J., Creasy, D.M., Cottrell, J.S.: Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20(18), 3551-3567 (1999) (Pubitemid 30007252)
13. Dunford, H.B., Ralston, I.M.: On the mechanism of iodination of tyrosine. Biochem. Biophys. Res. Commun. 116(2), 639-643 (1983)
14. Dunford, H.B., Adeniran, A.J.: The mechanism of the nonenzymatic iodination of tyrosine by molecular iodine. Biochem. Cell Biol. 66(9), 967-978 (1988) (Pubitemid 19004878)