Development of q-PCR approaches to assess water quality: Effects of cadmium on gene expression of the diatom Eolimna minima

Water Research

Volumn 46, Issue 4, 2012, Pages 934-942

  Kim Tiam, Sandra ^a,b   Feurtet Mazel, Agnès ^b   Delmas, François ^a   Mazzella, Nicolas ^a   Morin, Soizic ^a   Daffe, Guillemine ^b   Gonzalez, Patrice ^b  

^a CEMAGREF   (France)

^b UNIVERSITÉ DE BORDEAUX   (France)

Author keywords

Cadmium; Diatom; Eolimna minima; Metal; Quantitative real time PCR

Indexed keywords

BIOACCUMULATION; BIOCHEMISTRY; CADMIUM; GENE EXPRESSION; METABOLISM; METALS; MITOCHONDRIA; PHYTOPLANKTON; POLYMERASE CHAIN REACTION; RIVER POLLUTION; WATER QUALITY;

BIOLOGICAL MODELING; CONTROLLED LABORATORIES; DIATOM; EOLIMNA MINIMUM; MITOCHONDRIAL METABOLISM; MOLECULAR APPROACH; QUALITY DIAGNOSIS; QUANTITATIVE REAL TIME PCR;

GROWTH KINETICS;

BETA ACTIN; CADMIUM; CYTOCHROME C OXIDASE SUBUNIT I; CYTOCHROME P450 1A1; D1 PROTEIN; MITOCHONDRIAL RIBOSOMAL RNA 12S; MITOCHONDRIAL SUPEROXIDE DISMUTASE; PEPTIDES AND PROTEINS; PSAA PROTEIN; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; RNA 18S; UNCLASSIFIED DRUG;

ASSESSMENT METHOD; BENTHIC ENVIRONMENT; BIOACCUMULATION; BIOFILM; CADMIUM; CHLOROPLAST; DIATOM; GENE EXPRESSION; INHIBITION; LABORATORY METHOD; METABOLISM; MITOCHONDRION; MOLECULAR ANALYSIS; NUMERICAL MODEL; POLLUTION EXPOSURE; POLYMERASE CHAIN REACTION; POPULATION GROWTH; QUANTITATIVE ANALYSIS; REACTION KINETICS; WATER QUALITY;

ARTICLE; BIOACCUMULATION; BIOFILM; BIOLOGICAL MODEL; CELL DENSITY; CHLOROPLAST; DIATOM; EOLIMNA MINIMA; EXPOSURE; EXTRACTION; GENE EXPRESSION; GENE SEQUENCE; GENE TARGETING; GROWTH INHIBITION; GROWTH RATE; MITOCHONDRIAL RESPIRATION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATIVE STRESS; PHOTOSYNTHESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; RNA EXTRACTION; WATER ANALYSIS; WATER SAMPLING; WATER STANDARD; XENOBIOTIC METABOLISM;

BACILLARIOPHYTA; EOLIMNA MINIMA;

EID: 84856104456     PISSN: 00431354     EISSN: 18792448     Source Type: Journal    
DOI: 10.1016/j.watres.2011.11.005     Document Type: Article

References (41)

1. Antal T.K., Graevskaya E.E., Matorin D.N., Voronova E.N., Pogosyan S.I., Krendeleva T.E., Rubin A.B. Fluorescence study of the effect of mercuric chloride and methylmercury chloride on the photosynthetic activity of the diatom Thalassiosira weissflogii. Biophysics 2004, 49:66-72.
2. Bagchi D., Joshi S.S., Bagchi M., Balmoori J., Benner E.J., Kuszynski C.A., Stohs S.J. Cadmium- and chromium-induced oxidative stress, DNA damage, and apoptotic cell death in cultured human chronic myelogenous leukemic K562 cells, promyelocytic leukemic HL-60 cells, and normal human peripheral blood mononuclear cells. Journal of Biochemical and Molecular Toxicology 2000, 14:33-41.
3. Behra R., Landwehrjohann R., Vogel K., Wagner B., Sigg L. Copper and zinc content of periphyton from two rivers as a function of dissolved metal concentration. Aquatic Sciences 2002, 64:300-306.
4. Bonet, B., Corcoll, N., Morin, S., Tlili, A., Guasch, H., 2010. Antioxidant enzyme activities as biomarkers of metal contamination in biofilms: field validation using " in situ" metal exposure experiments. SETAC 2010.
5. Branco D., Lima A., Almeida S.F.P., Figueira E. Sensitivity of biochemical markers to evaluate cadmium stress in the freshwater diatom Nitzschia palea (Kützing) W. Smith. Aquatic Toxicology 2010, 99:109-117.
6. Bucio L., Souza V., Albores A., Sierra A., Chávez E., Cárabez A., Gutiérrez-Ruiz M.C. Cadmium and mercury toxicity in a human fetal hepatic cell line (WRL-68 cells). Toxicology 1995, 102:285-299.
7. Cambier S., Bénard G., Mesmer-Dudons N., Gonzalez P., Rossignol R., Brèthes D., Bourdineaud J.P. At environmental doses, dietary methylmercury inhibits mitochondrial energy metabolism in skeletal muscles of the zebra fish (Danio rerio). International Journal of Biochemistry and Cell Biology 2009, 41:791-799.
8. Castigliego L., Armani A., Li X., Grifoni G., Gianfaldoni D., Guidi A. Selecting reference genes in the white blood cells of buffalos treated with recombinant growth hormone. Analytical Biochemistry 2010, 403:120-122.
9. Cemagref Study of the Biological Methods for the Quantitative Assessment of Water Quality 1982, Rapport Q.E., Lyon A.F. - Bassin Rhône-Méditérannée-Corse, p. 218 (in French).
10. Chan P.K., Cheng S.H. Cadmium-induced ectopic apoptosis in zebrafish embryos. Archives of Toxicology 2003, 77:69-79.
11. Coste M., Boutry S., Tison-Rosebery J., Delmas F. Improvements of the biological diatom index (BDI): description and efficiency of the new version (BDI-2006). Ecological Indicators 2009, 9:621-650.
12. Dauta Conditions de développement du phytopancton. Etude comparative du comportement de huit espèces en culture. I. Détermination des paramètres de croissance en fonction de la lumière et de la température. Annales de Limnologie 1982, 18:217-262.
13. Davis A.K., Palenik B. Characterization of a modular, cell-surface protein and identification of a new gene family in the diatom Thalassiosira pseudonana. Protist 2008, 159:195-207.
14. Duong T.T., Morin S., Herlory O., Feurtet-Mazel A., Coste M., Boudou A. Seasonal effects of cadmium accumulation in periphytic diatom communities of freshwater biofilms. Aquatic Toxicology 2008, 90:19-28.
15. Fawley M.W., Fawley K.P. A simple and rapid technique for the isolation of DNA from microalgae. Journal of Phycology 2004, 40:223-225.
16. Feurtet-Mazel, A., Gold, C., Coste, M., Boudou, A., 2003. Study of periphytic diatoms communities exposed to metallic contamination through complementary field and laboratory experiments. 467-470.
17. Gold C., Feurtet-Mazel A., Coste M., Boudou A. Impacts of Cd and Zn on the development of periphytic diatom communities in artificial streams located along a river pollution gradient. Archives of Environmental Contamination and Toxicology 2003, 44:189-197.
18. Gonzalez P., Baudrimont M., Boudou A., Bourdineaud J.P. Comparative effects of direct cadmium contamination on gene expression in gills, liver, skeletal muscles and brain of the zebrafish (Danio rerio). BioMetals 2006, 19:225-235.
19. Gonzalez P., Dominique Y., Massabuau J.C., Boudou A., Bourdineaud J.P. Comparative effects of dietary methylmercury on gene expression in liver, skeletal muscle, and brain of the zebrafish (Danio rerio). Environmental Science and Technology 2005, 39:3972-3980.
20. Hildebrand M., Dahlin K., Volcani B.E. Characterization of a silicon transporter gene family in Cylindrotheca fusiformis: sequences, expression analysis, and identification of homologs in other diatoms. Molecular and General Genetics 1998, 260:480-486.
21. Hill W.R., Bednarek A.T., Larsen I.L. Cadmium sorption and toxicity in autotrophic biofilms. Canadian Journal of Fisheries and Aquatic Sciences 2000, 57:530-537.
22. Hörcsik Z.T., Kovács L., Láposi R., Mészáros I., Lakatos G., Garab G. Effect of chromium on photosystem 2 in the unicellular green alga, Chlorella pyrenoidosa. Photosynthetica 2007, 45:65-69.
23. Ivorra N., Hettelaar J., Tubbing G.M.J., Kraak M.H.S., Sabater S., Admiraal W. Translocation of microbenthic algal assemblages used for in situ analysis of metal pollution in rivers. Archives of Environmental Contamination and Toxicology 1999, 37:19-28.
24. Knauert S., Knauer K. The role of reactive oxygen species in copper toxicity to two freshwater green algae. Journal of Phycology 2008, 44:311-319.
25. Livak K.J., Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-ΔΔC(T)) method. Methods 2001, 25:402-408.
26. Morin S., Duong T.T., Dabrin A., Coynel A., Herlory O., Baudrimont M., Delmas F., Durrieu G., Schäfer J., Winterton P., Blanc G., Coste M. Long-term survey of heavy-metal pollution, biofilm contamination and diatom community structure in the Riou Mort watershed, South-West France. Environmental Pollution 2008, 151:532-542.
27. Morin S., Duong T.T., Herlory O., Feurtet-Mazel A., Coste M. Cadmium toxicity and bioaccumulation in freshwater biofilms. Archives of Environmental Contamination and Toxicology 2008, 54:173-186.
28. Morin S., Proia L., Ricart M., Bonnineau C., Geiszinger A., Ricciardi F., Guasch H., Romaní A., Sabater S. Effects of a bactericide on the structure and survival of benthic diatom communities. Vie et Milieu (Life and Environment) 2010, 60:109-116.
29. Morin S., Cordonier A., Lavoie I., Arini A., Blanco S., Duong T.T., Tornés E., Bonet B., Corcoll N., Faggiano L., Laviale M., Pérès F., Becares E., Coste M., Feurtet-Mazel A., Fortin C., Guasch H., Sabater S. Consistency in diatom response to metal-contaminated environments. Emerging and priority pollutants in rivers: bringing science into river management plans. Handbook of Environmental Chemistry 2011, Springer, 44 pp. A. Geiszinger, H. Guasch (Eds.).
30. Ouzounidou G., Moustakas M., Eleftheriou E.P. Physiological and ultrastructural effects of cadmium on wheat (Triticum aestivum L.) leaves. Archives of Environmental Contamination and Toxicology 1997, 32:154-160.
31. Pérès F., Coste M., Ricard F., Boudou A. Effects of methylmercury and inorganic mercury on periphytic diatom communities in freshwater indoor microcosms. Journal of Applied Phycology 1997, 9:215-227.
32. Radonić A., Thulke S., Mackay I.M., Landt O., Siegert W., Nitsche A. Guideline to reference gene selection for quantitative real-time PCR. Biochemical and Biophysical Research Communications 2004, 313:856-862.
33. Sauvant M.P., Pepin D., Bohatier J., Groliere C.A., Guillot J. Toxicity assessment of 16 inorganic environmental pollutants by six bioassays. Ecotoxicology and Environmental Safety 1997, 37:131-140.
34. Siaut M., Heijde M., Mangogna M., Montsant A., Coesel S., Allen A., Manfredonia A., Falciatore A., Bowler C. Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum. Gene 2007, 406:23-35.
35. Stabile J.E., Gallagher J.C., Wurtzel E.T. Molecular analysis of intraspecific variation in the marine diatom Skeletonema costatum. Biochemical Systematics and Ecology 1990, 18:5-9.
36. Stohs S.J., Bagchi D. Oxidative mechanisms in the toxicity of metal ions. Free Radical Biology and Medicine 1995, 18:321-336.
37. Sudo E., Itouga M., Yoshida-Hatanaka K., Ono Y., Sakakibara H. Gene expression and sensitivity in response to copper stress in rice leaves. Journal of Experimental Botany 2008, 59:3465-3474.
38. Torres E., Cid A., Herrero C., Abalde J. Effect of cadmium on growth, ATP content, carbon fixation and ultrastructure in the marine diatom Phaeodactylum tricornutum Bohlin. Water Air and Soil Pollution 2000, 117:1-14.
39. Tourtelot Contamination expérimentale par le cadmium et le zinc de diatomées périphytiques d'eau douce, Achnanthidium minutissimum, en conditions contrôlées de laboratoire 2003, Université Bordeaux.
40. Wang Y., Fang J., Leonard S.S., Krishna Rao K.M. Cadmium inhibits the electron transfer chain and induces reactive oxygen species. Free Radical Biology and Medicine 2004, 36:1434-1443.
41. Wawrik B., Paul J.H., Tabita F.R. Real-time PCR quantification of rbcL (ribulose-1,5-bisphosphate carboxylase/oxygenase) mRNA in diatoms and pelagophytes. Applied and Environmental Microbiology 2002, 68:3771-3779.