RNA dynamics in aging bacterial spores

Cell

Volumn 148, Issue 1-2, 2012, Pages 139-149

  Segev, Einat ^a   Smith, Yoav ^a   Ben Yehuda, Sigal ^a  

^a HEBREW UNIVERSITY   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA;

AGING; ARTICLE; BACILLUS SUBTILIS; BACTERIAL SPORE; GERMINATION; NONHUMAN; PRIORITY JOURNAL; RNA ANALYSIS; RNA DEGRADATION; SPOROGENESIS;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS);

EID: 84856099940     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2011.11.059     Document Type: Article

References (59)

1. E. Abel-Santos, and T. Dodatko Differential nucleoside recognition during Bacillus cereus 569 (ATCC 10876) spore germination N. J. Chem. 31 2007 748 755 (Pubitemid 46745151)
2. C. Bettegowda, X. Huang, J. Lin, I. Cheong, M. Kohli, S.A. Szabo, X.S. Zhang, L.A. Diaz Jr.; V.E. Velculescu, and G. Parmigiani The genome and transcriptomes of the anti-tumor agent Clostridium novyi-NT Nat. Biotechnol. 24 2006 1573 1580 (Pubitemid 44967483)
3. S.H. Black, and P. Gerhardt Permeability of bacterial spores. IV. Water content, uptake, and distribution J. Bacteriol. 83 1962 960 967
4. A.H. Camp, and R. Losick A feeding tube model for activation of a cell-specific transcription factor during sporulation in Bacillus subtilis Genes Dev. 23 2009 1014 1024
5. E.L. Carstensen, R.E. Marquis, and P. Gerhardt Dielectric study of the physical state of electrolytes and water within Bacillus cereus spores J. Bacteriol. 107 1971 106 113
6. P. Chambon, M.P. Deutscher, and A. Kornberg Biochemical studies of bacterial sporulation and germination. X. Ribosomes and nucleic acids of vegetative cells and spores of Bacillus megaterium J. Biol. Chem. 243 1968 5110 5116
7. P. Chambon, E.J. DuPraw, and A. Kornberg Biochemical studies of bacterial sporulation and germination. IX. Ribonucleic acid and deoxyribonucleic acid polymerases in nuclear fractions of vegetative cells and spores of Bacillus megaterium J. Biol. Chem. 243 1968 5101 5109
8. F. Cohn Untersuchungen über bakterien IV. Beiträge zur biologie der Bacillen Beitr. Biol. Pflanz. 2 1877 26
9. F.M. Commichau, F.M. Rothe, C. Herzberg, E. Wagner, D. Hellwig, M. Lehnik-Habrink, E. Hammer, U. Völker, and J. Stülke Novel activities of glycolytic enzymes in Bacillus subtilis: interactions with essential proteins involved in mRNA processing Mol. Cell. Proteomics 8 2009 1350 1360
10. A.E. Cowan, D.E. Koppel, B. Setlow, and P. Setlow A soluble protein is immobile in dormant spores of Bacillus subtilis but is mobile in germinated spores: implications for spore dormancy Proc. Natl. Acad. Sci. USA 100 2003 4209 4214 (Pubitemid 36418182)
11. A. Driks Maximum shields: the assembly and function of the bacterial spore coat Trends Microbiol. 10 2002 251 254 (Pubitemid 34671141)
12. E. Durban, N. Grecz, and J. Farkas Direct enzymatic repair of deoxyribonucleic acid single-strand breaks in dormant spores J. Bacteriol. 118 1974 129 138
13. J. Dworkin, and I.M. Shah Exit from dormancy in microbial organisms Nat. Rev. Microbiol. 8 2010 890 896
14. J. Errington Regulation of endospore formation in Bacillus subtilis Nat. Rev. Microbiol. 1 2003 117 126
15. C.A. Francis, and B.M. Tebo Enzymatic manganese(II) oxidation by metabolically dormant spores of diverse Bacillus species Appl. Environ. Microbiol. 68 2002 874 880 (Pubitemid 34113080)
16. P. Gerhardt, and R.E. Marquis Regulation of Procaryotic Development, 1 edn 1989 American Society for Microbiology Washington, DC
17. C.R. Harwood, and S.M. Cutting Molecular Biological Methods for Bacillus 1990 Wiley Chichester, NY
18. B.J.F. Keijser, A. Ter Beek, H. Rauwerda, F. Schuren, R. Montijn, H. van der Spek, and S. Brul Analysis of temporal gene expression during Bacillus subtilis spore germination and outgrowth J. Bacteriol. 189 2007 3624 3634 (Pubitemid 46668827)
19. R. Koch Investigations into bacteria: V. The etiology of anthrax, based on the ontogenesis of Bacillus anthracis Cohns Beitrage zur Biologie der Pflanzen 2 1876 13
20. R. Kuwana, N. Okuda, H. Takamatsu, and K. Watabe Modification of GerQ reveals a functional relationship between Tgl and YabG in the coat of Bacillus subtilis spores J. Biochem. 139 2006 887 901 (Pubitemid 44014583)
21. R.G. Leuschner, and P.J. Lillford Effects of hydration on molecular mobility in phase-bright Bacillus subtilis spores Microbiology 146 2000 49 55 (Pubitemid 30066306)
22. P.T. McKenney, A. Driks, H.A. Eskandarian, P. Grabowski, J. Guberman, K.H. Wang, Z. Gitai, and P. Eichenberger A distance-weighted interaction map reveals a previously uncharacterized layer of the Bacillus subtilis spore coat Curr. Biol. 20 2010 934 938
23. J. Meisner, X. Wang, M. Serrano, A.O. Henriques, and C.P. Moran Jr. A channel connecting the mother cell and forespore during bacterial endospore formation Proc. Natl. Acad. Sci. USA 105 2008 15100 15105
24. E. Melly, P.C. Genest, M.E. Gilmore, S. Little, D.L. Popham, A. Driks, and P. Setlow Analysis of the properties of spores of Bacillus subtilis prepared at different temperatures J. Appl. Microbiol. 92 2002 1105 1115 (Pubitemid 34535491)
25. R. Moeller, G. Horneck, P. Rettberg, H.J. Mollenkopf, E. Stackebrandt, and W.L. Nicholson A method for extracting RNA from dormant and germinating Bacillus subtilis strain 168 endospores Curr. Microbiol. 53 2006 227 231 (Pubitemid 44264463)
26. A. Moir How do spores germinate? J. Appl. Microbiol. 101 2006 526 530 (Pubitemid 44222283)
27. S. Nakashio, and P. Gerhardt Protoplast dehydration correlated with heat resistance of bacterial spores J. Bacteriol. 162 1985 571 578 (Pubitemid 15062430)
28. D.L. Nelson, and A. Kornberg Biochemical studies of bacterial sporulation and germination. XIX. Phosphate metabolism during sporulation J. Biol. Chem. 245 1970 1137 1145
29. D.L. Nelson, and A. Kornberg Biochemical studies of bacterial sporulation and germination. XX. Phosphate metabolism during germination J. Biol. Chem. 245 1970 1146 1155
30. K. Nevo-Dinur, A. Nussbaum-Shochat, S. Ben-Yehuda, and O. Amster-Choder Translation-independent localization of mRNA in E. coli Science 331 2011 1081 1084
31. P.L. Pelczar, T. Igarashi, B. Setlow, and P. Setlow Role of GerD in germination of Bacillus subtilis spores J. Bacteriol. 189 2007 1090 1098 (Pubitemid 46183884)
32. P.J. Piggot, and D.W. Hilbert Sporulation of Bacillus subtilis Curr. Opin. Microbiol. 7 2004 579 586 (Pubitemid 39536283)
33. K. Piir, A. Paier, A. Liiv, T. Tenson, and U. Maiväli Ribosome degradation in growing bacteria EMBO Rep. 12 2011 458 462
34. K. Ragkousi, and P. Setlow Transglutaminase-mediated cross-linking of GerQ in the coats of Bacillus subtilis spores J. Bacteriol. 186 2004 5567 5575 (Pubitemid 39128628)
35. P.J. Riesenman, and W.L. Nicholson Role of the spore coat layers in Bacillus subtilis spore resistance to hydrogen peroxide, artificial UV-C, UV-B, and solar UV radiation Appl. Environ. Microbiol. 66 2000 620 626 (Pubitemid 30082749)
36. J.L. Sanchez-Salas, B. Setlow, P. Zhang, Y.Q. Li, and P. Setlow Maturation of released spores is necessary for acquisition of full spore heat resistance during Bacillus subtilis sporulation Appl. Environ. Microbiol. 77 2011 6746 6754
37. L.Y. Santo, and R.H. Doi Ultrastructural analysis during germination and outgrowth of Bacillus subtilis spores J. Bacteriol. 120 1974 475 481
38. P. Schaeffer, J. Millet, and J.P. Aubert Catabolic repression of bacterial sporulation Proc. Natl. Acad. Sci. USA 54 1965 704 711
39. P. Setlow Mechanisms for the prevention of damage to DNA in spores of Bacillus species Annu. Rev. Microbiol. 49 1995 29 54
40. P. Setlow Spore germination Curr. Opin. Microbiol. 6 2003 550 556 (Pubitemid 38020050)
41. P. Setlow, and A. Kornberg Biochemical studies of bacterial sporulation and germination. XXII. Energy metabolism in early stages of germination of Bacillus megaterium spores J. Biol. Chem. 245 1970 3637 3644
42. I.M. Shah, M.H. Laaberki, D.L. Popham, and J. Dworkin A eukaryotic-like Ser/Thr kinase signals bacteria to exit dormancy in response to peptidoglycan fragments Cell 135 2008 486 496
43. P. Stragier, and R. Losick Molecular genetics of sporulation in Bacillus subtilis Annu. Rev. Genet. 30 1996 297-41
44. N. Vasantha, and E. Freese Enzyme changes during Bacillus subtilis sporulation caused by deprivation of guanine nucleotides J. Bacteriol. 144 1980 1119 1125 (Pubitemid 11219133)
45. S. Yao, and D.H. Bechhofer Initiation of decay of Bacillus subtilis rpsO mRNA by endoribonuclease RNase Y J. Bacteriol. 192 2010 3279 3286
46. P. Youngman, J.B. Perkins, and R. Losick Construction of a cloning site near one end of Tn917 into which foreign DNA may be inserted without affecting transposition in Bacillus subtilis or expression of the transposon-borne erm gene Plasmid 12 1984 1 9 (Pubitemid 14046086)
47. R. Zilhão, R. Isticato, L.O. Martins, L. Steil, U. Völker, E. Ricca, C.P. Moran Jr.; A.O. Henriques Assembly and function of a spore coat-associated transglutaminase of Bacillus subtilis J. Bacteriol. 187 2005 7753 7764 (Pubitemid 41587713)
48. Bejerano-Sagie, M.; Oppenheimer-Shaanan, Y.; Berlatzky, I.; Rouvinski, A.; Meyerovich, M.; Ben-Yehuda, S. (2006). A checkpoint protein that scans the chromosome for damage at the start of sporulation in Bacillus subtilis. Cell 125, 679-690.
49. Dubey, G.P.; Ben-Yehuda, S. (2011). Intercellular nanotubes mediate bacterial communication. Cell 144, 590-600.
50. Even, S.; Pellegrini, O.; Zig, L.; Labas, V.; Vinh, J.; Bréchemmier-Baey, D.; Putzer, H. (2005). Ribonucleases J1 and J2: two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase E. Nucleic Acids Res. 33, 2141-2152. (Pubitemid 41439882)
51. Guérout-Fleury, A.M.; Shazand, K.; Frandsen, N.; Stragier, P. (1995). Antibiotic-resistance cassettes for Bacillus subtilis. Gene 167, 335-336.
52. Hunt, A.; Rawlins, J.P.; Thomaides, H.B.; Errington, J. (2006). Functional analysis of 11 putative essential genes in Bacillus subtilis. Microbiology 152, 2895-2907. (Pubitemid 44542371)
53. Lemon, K.P.; Grossman, A.D. (1998). Localization of bacterial DNA polymerase: evidence for a factory model of replication. Science 282, 1516-1519. (Pubitemid 28538618)
54. Levin, P.A.; Grossman, A.D. (1998). Cell cycle and sporulation in Bacillus subtilis. Curr. Opin. Microbiol. 1, 630-635. (Pubitemid 128423267)
55. Londono-Vallejo, J.A. (1997). Mutational analysis of the early forespore/mother-cell signaling pathway in Bacillus subtilis. Microbiology-Uk 143, 2753-2761. (Pubitemid 27389961)
56. Mäder, U.; Zig, L.; Kretschmer, J.; Homuth, G.; Putzer, H. (2008). mRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale. Mol. Microbiol. 70, 183-196.
57. Redko, Y.; Condon, C. (2010). Maturation of 23S rRNA in Bacillus subtilis in the absence of Mini-III. J. Bacteriol. 192, 356-359.
58. Yao, S.Y.; Bechhofer, D.H. (2009). Processing and stability of inducibly expressed rpsO mRNA derivatives in Bacillus subtilis. J. Bacteriol. 191, 5680-5689.
59. Youngman, P.; Perkins, J.B.; Losick, R. (1984). Construction of a cloning site near one end of Tn917 into which foreign DNA may be inserted without affecting transposition in Bacillus subtilis or expression of the transposon-borne erm gene. Plasmid 12, 1-9. (Pubitemid 14046086)