메뉴 건너뛰기




Volumn 61, Issue 1, 2012, Pages 1-24

Flexible semiparametric analysis of longitudinal genetic studies by reduced rank smoothing

Author keywords

Genomewide association study; Penalized splines; Quantitative trait locus

Indexed keywords


EID: 84856039615     PISSN: 00359254     EISSN: 14679876     Source Type: Journal    
DOI: 10.1111/j.1467-9876.2011.01016.x     Document Type: Article
Times cited : (13)

References (49)
  • 1
    • 0036844002 scopus 로고    scopus 로고
    • Genome-wide linkage analysis of body mass index across 28 years of the Framingham Heart Study
    • Atwood, L., Heard-Costa, N., Cupples, L., Jaquish, C., Wilson, P. and D'Agostine, R. (2002) Genome-wide linkage analysis of body mass index across 28 years of the Framingham Heart Study. Am. J. Hum. Genet., 71, 1044-1050.
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 1044-1050
    • Atwood, L.1    Heard-Costa, N.2    Cupples, L.3    Jaquish, C.4    Wilson, P.5    D'Agostine, R.6
  • 2
    • 8644248383 scopus 로고    scopus 로고
    • Restricted likelihood ratio tests in nonparametric longitudinal models
    • Crainiceanu, C. and Ruppert, D. (2004) Restricted likelihood ratio tests in nonparametric longitudinal models. Statist. Sin., 14, 713-729.
    • (2004) Statist. Sin. , vol.14 , pp. 713-729
    • Crainiceanu, C.1    Ruppert, D.2
  • 3
    • 34248638448 scopus 로고    scopus 로고
    • Genetic Analysis Workshop 13: simulated longitudinal data on families for a system of oligogenic traits
    • article
    • Daw, E. W., Morrison, J., Zhou, X. and Thomas, D. (2003) Genetic Analysis Workshop 13: simulated longitudinal data on families for a system of oligogenic traits. BMC Genet., 4, suppl. 1, article S3.
    • (2003) BMC Genet. , vol.4 , Issue.SUPPL. 1
    • Daw, E.W.1    Morrison, J.2    Zhou, X.3    Thomas, D.4
  • 4
    • 0002572171 scopus 로고
    • Epidemiological approaches to heart disease: the Framingham Study
    • Dawber, T. R., Meadors, G. F. and Moore, F. E. J. (1951) Epidemiological approaches to heart disease: the Framingham Study. Am. J. Publ. Hlth, 41, 279-286.
    • (1951) Am. J. Publ. Hlth , vol.41 , pp. 279-286
    • Dawber, T.R.1    Meadors, G.F.2    Moore, F.E.J.3
  • 5
    • 25444532788 scopus 로고    scopus 로고
    • Flexible smoothing with B-splines
    • Eilers, P. and Marx, B. (1996) Flexible smoothing with B-splines. Statist. Sci., 11, 89-121.
    • (1996) Statist. Sci. , vol.11 , pp. 89-121
    • Eilers, P.1    Marx, B.2
  • 7
    • 34250768880 scopus 로고    scopus 로고
    • Analysis of longitudinal data with semiparametric estimation of covariance function
    • Fan, J., Huang, T. and Li, R. (2007) Analysis of longitudinal data with semiparametric estimation of covariance function. J. Am. Statist. Ass., 102, 632-641.
    • (2007) J. Am. Statist. Ass. , vol.102 , pp. 632-641
    • Fan, J.1    Huang, T.2    Li, R.3
  • 8
    • 72849119332 scopus 로고    scopus 로고
    • Testing for genetic effect on functional traits by functional principal components analysis based on heritability
    • Fang, Y. and Wang, Y. (2009) Testing for genetic effect on functional traits by functional principal components analysis based on heritability. Statist. Med., 28, 3611-3625.
    • (2009) Statist. Med. , vol.28 , pp. 3611-3625
    • Fang, Y.1    Wang, Y.2
  • 9
    • 77949517591 scopus 로고    scopus 로고
    • Genetic variance in the spinocerebellar ataxia type 2 (ATXN2) gene in children with severe early onset obesity
    • no. 12, article e8280.
    • Figueroa, K. P., Farooqi, S., Harrup, K., Frank, J., O'Rahilly, S. and Pulst, S. M. (2009) Genetic variance in the spinocerebellar ataxia type 2 (ATXN2) gene in children with severe early onset obesity. PLOS One, 4, no. 12, article e8280.
    • (2009) PLOS One , vol.4
    • Figueroa, K.P.1    Farooqi, S.2    Harrup, K.3    Frank, J.4    O'Rahilly, S.5    Pulst, S.M.6
  • 10
    • 43249090541 scopus 로고    scopus 로고
    • A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms
    • Gao, X., Starmer, J. and Martin, E. (2008) A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms. Genet. Epidem., 32, 361-369.
    • (2008) Genet. Epidem. , vol.32 , pp. 361-369
    • Gao, X.1    Starmer, J.2    Martin, E.3
  • 12
    • 0036208829 scopus 로고    scopus 로고
    • The mixed model or multilevel model for behavior genetics analysis
    • Guo, G. and Wang, J. (2002) The mixed model or multilevel model for behavior genetics analysis. Behav. Genet., 32, 37-49.
    • (2002) Behav. Genet. , vol.32 , pp. 37-49
    • Guo, G.1    Wang, J.2
  • 13
    • 72449170639 scopus 로고    scopus 로고
    • Mapping genes for plant structure, development and evolution: functional mapping meets ontology
    • He, Q., Berg, A., Li, Y., Vallejos, C. E. and Wu, R. (2010) Mapping genes for plant structure, development and evolution: functional mapping meets ontology. Trends Genet., 26, 39-46.
    • (2010) Trends Genet. , vol.26 , pp. 39-46
    • He, Q.1    Berg, A.2    Li, Y.3    Vallejos, C.E.4    Wu, R.5
  • 14
    • 0033044001 scopus 로고    scopus 로고
    • Expression of ataxin-2 in brains from normal individuals and patients with Alzheimer's disease and spinocerebellar ataxia 2
    • Huynh, D. P., Del Bigio, M. R., Ho, D. H. and Pulst, S. M. (1999) Expression of ataxin-2 in brains from normal individuals and patients with Alzheimer's disease and spinocerebellar ataxia 2. Ann. Neur., 45, 232-241.
    • (1999) Ann. Neur. , vol.45 , pp. 232-241
    • Huynh, D.P.1    Del Bigio, M.R.2    Ho, D.H.3    Pulst, S.M.4
  • 15
    • 0030863012 scopus 로고    scopus 로고
    • Evidence that the apolipoprotein E-genotype effects on lipid levels can change with age in males: a longitudinal analysis
    • Jarvik, G. P., Goode, E. L., Austin, M. A., Auwerx, J., Deeb, S., Schellenberg, G. D. and Reed, T. (1997) Evidence that the apolipoprotein E-genotype effects on lipid levels can change with age in males: a longitudinal analysis. Am. J. Hum. Genet., 61, 171-181.
    • (1997) Am. J. Hum. Genet. , vol.61 , pp. 171-181
    • Jarvik, G.P.1    Goode, E.L.2    Austin, M.A.3    Auwerx, J.4    Deeb, S.5    Schellenberg, G.D.6    Reed, T.7
  • 18
    • 38349052045 scopus 로고    scopus 로고
    • A note on penalized splines with correlated errors
    • Krivobokova, T. and Kauermann, G. (2007) A note on penalized splines with correlated errors. J. Am. Statist. Ass., 102, 1328-1337.
    • (2007) J. Am. Statist. Ass. , vol.102 , pp. 1328-1337
    • Krivobokova, T.1    Kauermann, G.2
  • 21
    • 0033770421 scopus 로고    scopus 로고
    • Evidence for a gene influencing blood pressure on chromosome 17: genome scan linkage results for longitudinal blood pressure phenotypes in subjects from the Framingham Heart Study
    • Levy, D., DeStefano, A. L., Larson, M. G., O'Donnell, C. J., Lifton, R. P., Gavras, H., Cupples, L. A. and Myers, R. H. (2000) Evidence for a gene influencing blood pressure on chromosome 17: genome scan linkage results for longitudinal blood pressure phenotypes in subjects from the Framingham Heart Study. Hypertension, 36, 477-483.
    • (2000) Hypertension , vol.36 , pp. 477-483
    • Levy, D.1    DeStefano, A.L.2    Larson, M.G.3    O'Donnell, C.J.4    Lifton, R.P.5    Gavras, H.6    Cupples, L.A.7    Myers, R.H.8
  • 23
    • 44849098150 scopus 로고    scopus 로고
    • On the asymptotics of penalized splines
    • Li, Y. and Ruppert, D. (2008) On the asymptotics of penalized splines. Biometrika, 95, 415-436.
    • (2008) Biometrika , vol.95 , pp. 415-436
    • Li, Y.1    Ruppert, D.2
  • 28
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • Price, A. L., Patterson, N. J., Plenge, R. M., Weinblatt, M. E., Shadick, N. A. and Reich, D. (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nat. Genet., 38, 904-909.
    • (2006) Nat. Genet. , vol.38 , pp. 904-909
    • Price, A.L.1    Patterson, N.J.2    Plenge, R.M.3    Weinblatt, M.E.4    Shadick, N.A.5    Reich, D.6
  • 29
    • 0021966338 scopus 로고
    • Path analysis of family resemblance with temporal trends: applications to height, weight, and Quetelet index in Northeastern Brazil
    • Province, M. A. and Rao, D. C. (1985) Path analysis of family resemblance with temporal trends: applications to height, weight, and Quetelet index in Northeastern Brazil. Am. J. Hum. Genet., 37, 178-192.
    • (1985) Am. J. Hum. Genet. , vol.37 , pp. 178-192
    • Province, M.A.1    Rao, D.C.2
  • 30
    • 39849107318 scopus 로고    scopus 로고
    • Biometrical modelling of twin and family data using standard mixed model software
    • Rabe-Hesketh, S., Skrondal, A. and Gjessing, H. K. (2008) Biometrical modelling of twin and family data using standard mixed model software. Biometrics, 64, 280-288.
    • (2008) Biometrics , vol.64 , pp. 280-288
    • Rabe-Hesketh, S.1    Skrondal, A.2    Gjessing, H.K.3
  • 31
    • 0034054165 scopus 로고    scopus 로고
    • A unified approach to adjusting association tests for population admixture with arbitrary pedigree structure and arbitrary missing marker information
    • Rabinowitz, D. and Laird, N. (2000) A unified approach to adjusting association tests for population admixture with arbitrary pedigree structure and arbitrary missing marker information. Hum. Hered., 50, 211-223.
    • (2000) Hum. Hered. , vol.50 , pp. 211-223
    • Rabinowitz, D.1    Laird, N.2
  • 32
    • 0034305497 scopus 로고    scopus 로고
    • Evo-devo: the evolution of a new discipline
    • Raff, R. A. (2000) Evo-devo: the evolution of a new discipline. Nat. Rev. Genet., 1, 74-79.
    • (2000) Nat. Rev. Genet. , vol.1 , pp. 74-79
    • Raff, R.A.1
  • 33
    • 0037180439 scopus 로고    scopus 로고
    • A general population genetic theory for the evolution of developmental interactions
    • Rice, S. H. (2002) A general population genetic theory for the evolution of developmental interactions. Proc. Natn. Acad. Sci. USA, 99, 15518-15523.
    • (2002) Proc. Natn. Acad. Sci. USA , vol.99 , pp. 15518-15523
    • Rice, S.H.1
  • 34
    • 0036921633 scopus 로고    scopus 로고
    • Selecting the number of knots for penalized splines
    • Ruppert, D. (2002) Selecting the number of knots for penalized splines. J. Computnl Graph. Statist., 11, 735-757.
    • (2002) J. Computnl Graph. Statist. , vol.11 , pp. 735-757
    • Ruppert, D.1
  • 36
    • 28044456588 scopus 로고    scopus 로고
    • SAS Institute. Cary: SAS Institute.
    • SAS Institute (2004) SAS 9.1.3 Help and Documentation. Cary: SAS Institute.
    • (2004) SAS 9.1.3 Help and Documentation
  • 37
    • 38149065311 scopus 로고    scopus 로고
    • Ignoring temporal trends in genetic effects substantially reduces power of quantitative trait linkage analysis
    • Shi, G. and Rao, D. C. (2008) Ignoring temporal trends in genetic effects substantially reduces power of quantitative trait linkage analysis. Genet. Epidem., 32, 61-72.
    • (2008) Genet. Epidem. , vol.32 , pp. 61-72
    • Shi, G.1    Rao, D.C.2
  • 38
    • 0345412667 scopus 로고    scopus 로고
    • Genetic analysis of phenotypes derived from longitudinal data: Presentation Group 1 of Genetic Analysis Workshop 13
    • Strauch, J., Golla, A., Wilcox, M. A. and Baur, M. P. (2003) Genetic analysis of phenotypes derived from longitudinal data: Presentation Group 1 of Genetic Analysis Workshop 13. Genet. Epidem., 25, suppl. 1, S5-S17.
    • (2003) Genet. Epidem. , vol.25 , Issue.SUPPL. 1
    • Strauch, J.1    Golla, A.2    Wilcox, M.A.3    Baur, M.P.4
  • 39
    • 26444496137 scopus 로고    scopus 로고
    • Adjusting for treatment effects in studies: antihypertensive therapy and systolic blood pressure
    • Tobin, M. D., Sheehan, N. A., Scurrah, K. J. and Burton, P. R. (2005) Adjusting for treatment effects in studies: antihypertensive therapy and systolic blood pressure. Statist. Med., 24, 2911-2935.
    • (2005) Statist. Med. , vol.24 , pp. 2911-2935
    • Tobin, M.D.1    Sheehan, N.A.2    Scurrah, K.J.3    Burton, P.R.4
  • 40
    • 0038170349 scopus 로고    scopus 로고
    • Smoothing and mixed models
    • Wand, M. P. (2003) Smoothing and mixed models. Computnl Statist., 18, 223-249.
    • (2003) Computnl Statist. , vol.18 , pp. 223-249
    • Wand, M.P.1
  • 41
    • 47249158963 scopus 로고    scopus 로고
    • On O'Sullivan penalised splines and semiparametric regression
    • Wand, M. P. and Ormerod, J. T. (2008) On O'Sullivan penalised splines and semiparametric regression. Aust. New Zeal. J. Statist., 50, 179-198.
    • (2008) Aust. New Zeal. J. Statist. , vol.50 , pp. 179-198
    • Wand, M.P.1    Ormerod, J.T.2
  • 42
    • 79959345952 scopus 로고    scopus 로고
    • Unbiased and efficient estimation of the effect of candidate genes on quantitative traits in the presence of population admixture
    • Wang, Y., Yang, Q. and Rabinowitz, D. (2011) Unbiased and efficient estimation of the effect of candidate genes on quantitative traits in the presence of population admixture. Biometrics, 67, 331-343.
    • (2011) Biometrics , vol.67 , pp. 331-343
    • Wang, Y.1    Yang, Q.2    Rabinowitz, D.3
  • 45
    • 0034097623 scopus 로고    scopus 로고
    • Adjusting for confounding due to population admixture when estimating the effect of candidate genes on quantitative traits
    • Yang, Q., Rabinowitz, D., Isasi, C. and Shea, S. (2000) Adjusting for confounding due to population admixture when estimating the effect of candidate genes on quantitative traits. Hum. Hered., 50, 227-233.
    • (2000) Hum. Hered. , vol.50 , pp. 227-233
    • Yang, Q.1    Rabinowitz, D.2    Isasi, C.3    Shea, S.4
  • 46
    • 77954187595 scopus 로고    scopus 로고
    • Analyze multivariate phenotypes in genetic association studies by combining univariate association tests
    • Yang, Q., Wu, H., Guo, C. and Fox, C. (2010) Analyze multivariate phenotypes in genetic association studies by combining univariate association tests. Genet. Epidem., 34, 444-454.
    • (2010) Genet. Epidem. , vol.34 , pp. 444-454
    • Yang, Q.1    Wu, H.2    Guo, C.3    Fox, C.4
  • 47
    • 33747605762 scopus 로고    scopus 로고
    • Linkage analysis of longitudinal data and design consideration
    • Zhang, H. and Zhong, X. (2006) Linkage analysis of longitudinal data and design consideration. BMC Genet., 7, article 37.
    • (2006) BMC Genet. , vol.7
    • Zhang, H.1    Zhong, X.2
  • 48
    • 49549116197 scopus 로고    scopus 로고
    • Wavelet-based nonparametric functional mapping of longitudinal curves
    • Zhao, W. and Wu, R. (2008) Wavelet-based nonparametric functional mapping of longitudinal curves. J. Am. Statist. Ass., 103, 714-725.
    • (2008) J. Am. Statist. Ass. , vol.103 , pp. 714-725
    • Zhao, W.1    Wu, R.2
  • 49
    • 10844256588 scopus 로고    scopus 로고
    • A unified statistical model for functional mapping of environment-dependent genetic expression and genotype × environment interactions for ontogenetic development
    • Zhao, W., Zhu, J., Gallo-Meagher, M. and Wu, R. (2004) A unified statistical model for functional mapping of environment-dependent genetic expression and genotype × environment interactions for ontogenetic development. Genetics, 168, 1751-1762.
    • (2004) Genetics , vol.168 , pp. 1751-1762
    • Zhao, W.1    Zhu, J.2    Gallo-Meagher, M.3    Wu, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.