A biogeographic distribution of magnetotactic bacteria influenced by salinity

ISME Journal

Volumn 6, Issue 2, 2012, Pages 475-479

  Lin, Wei ^a   Wang, Yinzhao ^a   Li, Bi ^a   Pan, Yongxin ^a  

^a INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

biogeography; magnetotactic bacteria; microbial diversity; salinity

Indexed keywords

BACTERIAL DNA; FRESH WATER; RNA 16S;

BACTERIUM; BIOGEOGRAPHY; FRESHWATER ECOSYSTEM; GLOBAL CHANGE; GREIGITE; IRON; MAGNETITE; MARINE ECOSYSTEM; MICROBIAL COMMUNITY; SEA SURFACE SALINITY; SPATIAL DISTRIBUTION; SPECIES DIVERSITY; TRANSMISSION ELECTRON MICROSCOPY;

ALPHAPROTEOBACTERIA; ARTICLE; BIODIVERSITY; CHINA; CLASSIFICATION; ECOSYSTEM; GENETICS; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; PHYSIOLOGY; SALINITY; TRANSMISSION ELECTRON MICROSCOPY; ULTRASTRUCTURE;

ALPHAPROTEOBACTERIA; BIODIVERSITY; CHINA; DNA, BACTERIAL; ECOSYSTEM; FRESH WATER; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SALINITY; WATER MICROBIOLOGY;

CHINA;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); NITROSPIRAE;

EID: 84855915026     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2011.112     Document Type: Article

References (22)

1. Amann R, Peplies J, Schüler D. (2006). Diversity and taxonomy of magnetotactic bacteria. In: Schüler D (ed). Magnetoreception and Magnetosomes in Bacteria. Springer: Berlin, pp 25-36.
2. Bazylinski DA, Frankel RB. (2004). Magnetosome formation in prokaryotes. Nat Rev Microbiol 2: 217-230. (Pubitemid 39496780)
3. de Wit R, Bouvier T. (2006). 'Everything is everywhere, but, the environment selects'; what did Baas Becking and Beijerinck really say? Environ Microbiol 8: 755-758. (Pubitemid 43363332)
4. Faivre D, Schüler D. (2008). Magnetotactic bacteria and magnetosomes. Chem Rev 108: 4875-4898.
5. Flies CB, Peplies J, Schüler D. (2005). Combined approach for characterization of uncultivated magnetotactic bacteria from various aquatic environments. Appl Environ Microbiol 71: 2723-2731. (Pubitemid 40647019)
6. Hamady M, Lozupone CA, Knight R. (2010). Fast UniFrac: Facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J 4: 17-27.
7. Huber T, Faulkner G, Hugenholtz P. (2004). Bellerophon: A program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 2317-2319. (Pubitemid 39341624)
8. Jogler C, Lin W, Meyerdierks A, Kube M, Katzmann E, Flies C et al. (2009). Towards cloning the magnetotactic metagenome: Identification of magnetosome island gene clusters in uncultivated magnetotactic bacteria from different aquatic sediments. Appl Environ Microbiol 75: 3972-3979.
9. Jogler C, Niebler M, Lin W, Kube M, Wanner G, Kolinko S et al. (2010). Cultivation-independent characterization of 'Candidatus Magnetobacterium bavaricum' via ultrastructural, geochemical, ecological and metagenomic methods. Environ Microbiol 12: 2466-2478.
10. Jogler C, Schüler D. (2009). Genomics, genetics, and cell biology of magnetosome formation. Annu Rev Microbiol 63: 501-521.
11. Jogler C, Wanner G, Kolinko S, Niebler M, Amann R, Petersen N et al. (2011). Conservation of proteobacterial magnetosome genes and structures in an uncultivated member of the deep-branching Nitrospira phylum. Proc Natl Acad Sci USA 108: 1134-1139.
12. Kopp RE, Kirschvink JL. (2008). The identification and biogeochemical interpretation of fossil magnetotactic bacteria. Earth-Sci Rev 86: 42-61. (Pubitemid 350227019)
13. Lin W, Jogler C, Schüler D, Pan Y. (2011). Metagenomic analysis reveals unexpected subgenomic diversity of magnetotactic bacteria within the Phylum Nitrospirae. Appl Environ Microbiol 77: 323-326.
14. Lin W, Pan Y. (2009). Uncultivated magnetotactic cocci from Yuandadu park in Beijing, China. Appl Environ Microbiol 75: 4046-4052.
15. Lin W, Tian L, Li J, Pan Y. (2008). Does capillary racetrackbased enrichment reflect the diversity of uncultivated magnetotactic cocci in environmental samples? FEMS Microbiol Lett 279: 202-206.
16. Liu ZZ, Lozupone CA, Hamady M, Bushman FD, Knight R. (2007). Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Res 35: E120.
17. Lozupone CA, Knight R. (2007). Global patterns in bacterial diversity. Proc Natl Acad Sci USA 104: 11436-11440. (Pubitemid 47175158)
18. Martiny JBH, Bohannan BJM, Brown JH, Colwell RK, Fuhrman JA, Green JL et al. (2006). Microbial biogeography: Putting microorganisms on the map. Nat Rev Microbiol 4: 102-112. (Pubitemid 43158153)
19. Oren A. (2001). The bioenergetic basis for the decrease in metabolic diversity at increasing salt concentrations: Implications for the functioning of salt lake ecosystems. Hydrobiologia 466: 61-72. (Pubitemid 34287038)
20. Simmons SL, Sievert SM, Frankel RB, Bazylinski DA, Edwards KJ. (2004). Spatiotemporal distribution of marine magnetotactic bacteria in a seasonally stratified coastal salt pond. Appl Environ Microbiol 70: 6230-6239. (Pubitemid 39471873)
21. Spring S, Amann R, Ludwig W, Schleifer KH, van Gemerden H, Petersen N. (1993). Dominating role of an unusual magnetotactic bacterium in the microaerobic zone of a freshwater sediment. Appl Environ Microbiol 59: 2397-2403.
22. Whitman WB, Coleman DC, Wiebe WJ. (1998). Prokaryotes: The unseen majority. Proc Natl Acad Sci USA 95: 6578-6583. (Pubitemid 28278022)