In-field distribution of Plasmodiophora brassicae measured using quantitative real-time PCR

Plant Pathology

Volumn 61, Issue 1, 2012, Pages 16-28

  Wallenhammar, A C ^a,b   Almquist, C ^a,c   Soderstrom M ^a   Jonsson, A ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^b HS Konsult AB   (Sweden)

^c Eurofins Medinet Inc   (Germany)

Author keywords

Clubroot; Naturally infested soil; Spatial distribution

Indexed keywords

BIOASSAY; CULTIVAR; DISEASE INCIDENCE; DISEASE PREVALENCE; DISEASE RESISTANCE; FIELD; FUNGUS; GENETIC ANALYSIS; GENOMICS; PATHOGEN; PLASMID; POLYMERASE CHAIN REACTION; PROBABILITY; PROBE; REAL TIME; REGRESSION ANALYSIS; RISK ASSESSMENT; SOIL ANALYSIS; SOIL MICROORGANISM; SPATIAL DISTRIBUTION;

PLASMODIOPHORA; PLASMODIOPHORA BRASSICAE;

EID: 84855862341     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/j.1365-3059.2011.02477.x     Document Type: Article

References (59)

1. Adamchuck VI, Lund ED, Reed TM, Ferguson RB, 2007. Evaluation of an on-the-go technology for soil pH mapping. Precision Agriculture 8, 139-49.
2. Agrarwal A, 2008. Interactions of Plasmodiophora brassicae with Arabidopsis thaliana. Geelong, Australia: Deakin University, PhD thesis.
3. Anonymous, 2009. Mendel- Die Kolhernie-Resistente MSL- hybride.
4. Atkins SD, Clark IM, Sosnowska D, Hirsch PR, Kerry BR, 2003. Detection and quantification of Plactosphaerella cucumerina, a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media, and baiting. Applied and Environmental Microbiology 69, 4788-93.
5. Atkins SD, Clark IM, Pande S, Hirsch PR, Kerry BR, 2005. The use of real-time PCR and species-specific primers for the identification and monitoring of Paecilomyces lilacinus. FEMS Microbiology Ecology 51, 257-64.
6. Bilodeau G, Uribe P, Koike ST, Martin F, 2010. Quantification and rapid detection of Verticillum dahliae in soil. Phytopathology 100 (Suppl.), S14.
7. Brierley JL, Stewart JA, Lees AK, 2009. Quantifying potato pathogen DNA in soil. Applied Soil Ecology 41, 234-8.
8. Brokenshire T, Lewis S, 1981. Clubroot populations in SE Scotland. In: Proceedings, Eucarpia Vegetables Sections Conference 1981, Agricultural University of Norway, 12-5.
9. Buczacki ST, 1983. Plasmodiophora. An inter-relationship between biological and practical problems. In: Buczacki ST, ed. Zoosporic Plant Pathogens: a Modern Perspective. London, UK: Academic Press Inc, 161-91.
10. Burrough PA, McDonnell RA, 1998. Principles of Geographical Information Systems. Oxford, UK: Oxford University Press.
11. Cao T, Tewari J, Strelkov SE, 2007. Molecular detection of Plasmodiophora brassicae, causal agent of clubroot of crucifers, in plant and soil. Plant Disease 91, 80-7.
12. Chandelier A, Ivors K, Garbeletto M, Zini J, Laurent F, Cavelier M, 2006. Validation of a real-time PCR method for the detection of Phytophthora ramorum. Bulletin OEPP. EPPO Bulletin 36, 409-14.
13. Cullen DW, Lees AK, Toth IK, Duncan J, 2001. Conventional PCR and real-time quantitative PCR detection of Helminthosporium solani in soil and on potato tubers. European Journal of Plant Pathology 107, 387-98.
14. Cullen DW, Lees AK, Toth IK, Duncan JM, 2002. Detection of Colletotrichum coccodes from soil and potato tubers by conventional and quantitative real-time PCR. Plant Pathology 51, 281-92.
15. Diederichsen E, Frauen M, Linders EGA, Hatakeyama K, Hirari M, 2009. Status and perspectives of clubroot resistance breeding in crucifer crops. Journal of Plant Growth Regulation 28, 265-81.
16. Dixon GR, 2009. The occurrence and economic impact of Plasmodiophora brassicae and clubroot disease. Journal of Plant Growth Regulation 28, 194-202.
17. Donald EC, Porter IJ, 2009. Integrated control of clubroot. Journal of Plant Growth Regulation 28, 289-303.
18. Donald EC, Porter IJ, Faggian R et al., 2009. Managing plasmodiophorid pathogens on Australian vegetable farms. Plant Protection Science 45, 34.
19. Elväng AM, 1998. Quantitative Monitoring of Microorganisms in Environmental Samples using Biomarkers. Stockholm, Sweden: University of Stockholm, PhD thesis.
20. Engquist LG, 1994. Distribution of clubroot in Sweden and the effect of infection on oil content of oilseed rape. Sveriges Utsädesförenings Tidskrift 104, 82-6.
21. Faggian R, Strelkov SE, 2009. Detection and measurement of Plasmodiophora brassicae. Journal of Plant Growth Regulation 28, 282-8.
22. Faggian R, Bulman SR, Lawrie AC, Porter IJ, 1999. Specific polymerase chain reaction primers for the detection of Plasmodiophora brassicae in soil and water. Phytopathology 89, 392-7.
23. Friberg H, 2005. Persistence ofPlasmodiophora brassicae. Influence of Non-Host Plants, Soil Fauna and Organic Material. Uppsala, Sweden: Swedish University of Agricultural Sciences, PhD thesis.
24. Gilligan CA, 1982. Size and shape of sampling units for estimating incidence of sharp eyespot, Rhizoctonia cerealis, in plots of wheat. Journal of Agricultural Science 99, 461-4.
25. Gilligan CA, Simons SA, Heide GA, 1996. Inoculum density and spatial patterns of Rhizoctonia solani in field plots of Solanum tuberosum: effects of cropping frequency. Plant Pathology 45, 232-44.
26. Graf H, Fähling M, Siemens J, 2004. Chromosome polymorphism of the obligate biotrophic parasite Plasmodiophora brassicae. Journal of Phytopathology 152, 86-91.
27. Heyman F, 2008. Root Rot of Pea caused by Aphanomyces euteiches; Calcium Dependent Soil Suppressiveness, Molecular Detection and Population Structure. Uppsala, Sweden: Swedish University of Agricultural Sciences, PhD thesis.
28. Hornby D, 1998. Take-all Disease of Cereals. A Regional Perspective. Wallingford, UK: CAB International.
29. Idczak E, Trautwein F, 2008. Sortenprufungen mit spatem Wiesskohl fur Frischmarkt und Lagerung: Eideutige unterschiede bei weisskohlsorten. Gemuse 44, 13-5.
30. Ito S, Maechara T, Tanaka S, Kameya-Iwaki M, Yano S, Kishi F, 1997. Cloning of single-copy DNA sequence unique to Plasmodiophora brassicae. Physiological and Molecular Plant Pathology 50, 289-300.
31. Ito S, Maehara T, Maruno E, Tanaka S, Kameya-Iwaki M, Kishi F, 1999. Development of a PCR-based assay for the detection of Plasmodiophora brassicae in soil. Journal of Phytopathology 147, 83-8.
32. Karling JS, 1968. The Plasmodiphorales, 2nd edn. New York & London: Hafner Publishing Company.
33. Lange L, Heide M, Hobolth L, Olson LW, 1989. Serological detection of Plasmodiophora brassicae by dot immunobinding and visualization of the serological reaction by scanning electron microscopy. Phytopathology 79, 1066-71.
34. Lark RM, Ferguson RB, 2004. Mapping risk of soil nutrient deficiency or excess by disjunctive and indicator kriging. Geoderma 118, 39-53.
35. Lees AK, Cullen DW, Sullivan L, 2002. Development of conventional and quantitative real-time PCR assays for the detection and identification of Rhizoctonia solani AG-3 in potato and soil. Plant Pathology 51, 293-302.
36. Linnasalmi A, Tovianinen A, 1991. Occurrence of clubroot and Plasmodiophora brassicae Wor. races in Finland. Journal of Agricultural Science in Finland 63, 415-34.
37. Murakami H, Tsushima S, Shishido Y, 2000. Soil suppressiveness to clubroot disease of Chinese cabbage caused by Plasmodiophora brassicae. Soil Biology and Biochemistry 32, 1637-42.
38. Ophel-Keller K, McKay A, Hartley D, Herdina, Curran J, 2008. Development of routine DNA-based testing service for soilborne diseases in Australia. Australasian Plant Pathology 37, 243-53.
39. Osaki K, Fujiyama S, Nakayama A, Shimizu Y, Ito S, Tanaka S, 2008. Relation between pathogenicity and genetic variation within Plasmodiophora brassicae. Journal of General Plant Pathology 74, 281-8.
40. Ratti C, Budge G, Ward L, 2004. Detection and relative quantification of soil-borne cereal mosaic virus (SBCMV) and Polymyxa graminis in winter wheat using real-time PCR (TaqMan (R)). Journal of Virological Methods 122, 95-103.
41. Schroeder KL, Okubara PA, Tambong JT, Lévesque CA, Paulitz TC, 2006. Identification and quantification of Pythium species from soils in eastern Washington using real-time polymerase chain reaction. Phytopathology 96, 637-47.
42. Strelkov SE, Manolii VP, Cao T, Xue S, Hwang SF, 2007. Pathotype classification of Plasmodiophora brassicae and its occurrence Brassica napus in Alberta, Canada. Journal of Phytopathology 155, 706-12.
43. Sundelin T, Beck Christensen C, Larsen J et al., 2010. In planta quantification of Plasmodiophora brassicae using signature fatty acids and real-time PCR. Plant Disease 94, 432-8.
44. Tewari JP, Strelkov SE, Orchard D, Hartman M, Lange RM, Turkington T, 2005. Identification of clubroot of crucifers on canola (Brassica napus) in Alberta. Canadian Journal of Plant Pathology 27, 143-4.
45. Valsesia G, Gobbin D, Patocchi A, Vecchione A, Pertot I, Gessler C, 2005. Development of a high-throughput method for quantification of Plasmopara viticola DNA in grapevine leaves by means of quantitative real-time polymerase chain reaction. Phytopathology 95, 672-8.
46. Van Meirvenne M, Goovaerts P, 2001. Evaluating the probability of exceeding a site-specific soil cadmium contamination threshold. Geoderma 102, 75-100.
47. Wakeham A, Faggian R, Kennedy R, 2008. Development and validation of "in field" detection kits for the clubroot pathogen Plasmodiophora brassicae. Journal of Plant Pathology 90 (Suppl. 2), 425.
48. Wallenhammar A-C, 1996. Prevalence of Plasmodiophora brassicae in a spring oilseed rape growing area in central Sweden and factors influencing soil infestation levels. Plant Pathology 45, 710-9.
49. Wallenhammar A-C, 1998. Observations on yield loss from Plasmodiophora brassicae infections in spring oilseed rape. Zeitschrift für Pflanzenkrankheit und Pflantzenschütz 105, 1-7.
50. Wallenhammar A-C, 2010. Monitoring and control of Plasmodiophpora brassicae in spring oilseed brassica crops. In: Proceedings of the Fifth International Symposium on Brassicas and Sixteenth Crucifer Genetics Workshop, Lillehammer, Norway, 8-12 September 2008. 181-90.
51. Wallenhammar A-C, Arwidsson O, 2001. Detection of Plasmodiophora brassicae by PCR in naturally infested soils. European Journal of Plant Pathology 107, 313-21.
52. Wallenhammar A-C, Johnson L, Gerhardson B, 2000. Agronomic properties of partly clubroot-resistant spring oilseed turnip rape lines. Journal of Phytopathology 148, 495-9.
53. Ward E, Adams MJ, 1998. Analysis of ribosomal DNA sequences of Polymyxa species and related fungi and the development of genus- and species-specific PCR primers. Mycological Research 102, 965-74.
54. Webster R, Oliver MA, 1992. Sample adequately to estimate variograms of soil properties. Journal of Soil Science 43, 177-92.
55. Wetterlind J, 2009. Improved Farm Soil Mapping Using Near Infrared Reflection Spectroscopy. Uppsala, Sweden: Swedish University of Agricultural Sciences, PhD thesis.
56. Wetterlind J, Stenberg B, Jonsson A, 2008. Near infrared reflectance spectroscopy compared with soil clay and organic content for estimating within-field variation in N-uptake in cereals. Plant and Soil 302, 317-27.
57. White JG, Wakeham AJ, 1995. Serological detection of resting spores of Plasmodiophora brassicae in soil. Bulletin OEPP. EPPO Bulletin 25, 75-80.
58. White TJ, Bruns T, Lee S, Taylor J, 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR Protocols: a Guide to Methods and Applications, San Diego, CA, USA: Academic Press, 315-22.
59. Zang L, Liu X, Zhu S, Chen S, 2006. Detection of the nematophagous fungus Hirsutella rhossiliensis in soil by real-time PCR and parasitism bioassay. Biological Control 36, 316-23.