Structural insight into the role of Streptococcus parasanguinis Fap1 within oral biofilm formation

Biochemical and Biophysical Research Communications

Volumn 417, Issue 1, 2012, Pages 421-426

  Garnett, James A ^a   Simpson, Peter J ^a   Taylor, Jonathan ^a   Benjamin, Stefi V ^a   Tagliaferri, Camille ^a   Cota, Ernesto ^a   Chen, Yi Ywan M ^b   Wu, Hui ^c   Matthews, Stephen ^a  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

^b CHANG GUNG UNIVERSITY   (Taiwan)

^c UNIVERSITY OF ALABAMA AT BIRMINGHAM   (United States)

Author keywords

Adhesion; Biofilm; Dental plaque; Fimbriae; Serine rich repeat; Streptococci

Indexed keywords

BACTERIAL PROTEIN; FIMBRIAE ASSOCIATED PROTEIN 1; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL SURVIVAL; BIOFILM; CONTROLLED STUDY; CRYSTAL STRUCTURE; DENTAL PELLICLE; NONHUMAN; PH; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; STREPTOCOCCUS PARASANGUINIS;

BIOFILMS; CRYSTALLOGRAPHY, X-RAY; FIMBRIAE PROTEINS; HUMANS; HYDROGEN-ION CONCENTRATION; MODELS, BIOLOGICAL; MOUTH; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, SECONDARY; STATIC ELECTRICITY; STREPTOCOCCUS;

BACTERIA (MICROORGANISMS); STAPHYLOCOCCUS; STREPTOCOCCUS PARASANGUINIS;

EID: 84855817151     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2011.11.131     Document Type: Article

References (36)

1. Becker M.R., Paster B.J., Leys E.J., Moeschberger M.L., Kenyon S.G., Galvin J.L., Boches S.K., Dewhirst F.E., Griffen A.L. Molecular analysis of bacterial species associated with childhood caries. Journal of clinical microbiology 2002, 40:1001-1009.
2. Paju S., Scannapieco F.A. Oral biofilms, periodontitis, and pulmonary infections. Oral diseases 2007, 13:508-512.
3. F.A. Scannapieco, R.B. Bush, S. Paju, Associations between periodontal disease and risk for atherosclerosis, cardiovascular disease, and stroke. A systematic review, Annals of periodontology/the American Academy of Periodontology 8 (2003) 38-53.
4. S. Fujitani, M.C. Rowlinson, W.L. George, Penicillin G-resistant viridans group streptococcal endocarditis and interpretation of the American Heart Association's Guidelines for the Treatment of Infective Endocarditis, Clinical infectious diseases: an official publication of the Infectious Diseases Society of America 46 (2008) 1064-1066.
5. E. Giannitsioti, C. Chirouze, A. Bouvet, I. Beguinot, F. Delahaye, J.L. Mainardi, M. Celard, L. Mihaila-Amrouche, V.L. Moing, B. Hoen, Characteristics and regional variations of group D streptococcal endocarditis in France, Clinical microbiology and infection: the official publication of the European Society of Clinical Microbiology and Infectious Diseases 13 (2007) 770-776.
6. Westling K., Julander I., Ljungman P., Jalal S., Nord C.E., Wretlind B. Viridans group streptococci in blood culture isolates in a Swedish university hospital: antibiotic susceptibility and identification of erythromycin resistance genes. International journal of antimicrobial agents 2006, 28:292-296.
7. Kolenbrander P.E. Oral microbial communities: biofilms, interactions, and genetic systems. Annual Review of Microbiology 2000, 54:413-437.
8. Costerton J.W., Lewandowski Z., Caldwell D.E., Korber D.R., Lappin-Scott H.M. Microbial biofilms. Annual review of microbiology 1995, 49:711-745.
9. Wu H., Mintz K.P., Ladha M., Fives-Taylor P.M. Isolation and characterization of Fap1, a fimbriae-associated adhesin of Streptococcus parasanguis FW213. Molecular Microbiology 1998, 28:487-500.
10. Wu H., Fives-Taylor P.M. Identification of dipeptide repeats and a cell wall sorting signal in the fimbriae-associated adhesin, Fap1, of Streptococcus parasanguis. Molecular microbiology 1999, 34:1070-1081.
11. Stephenson A.E., Wu H., Novak J., Tomana M., Mintz K., Fives-Taylor P. The Fap1 fimbrial adhesin is a glycoprotein: antibodies specific for the glycan moiety block the adhesion of Streptococcus parasanguis in an in vitro tooth model. Molecular microbiology 2002, 43:147-157.
12. Zhou M., Wu H. Glycosylation and biogenesis of a family of serine-rich bacterial adhesins. Microbiology 2009, 155:317-327.
13. Froeliger E.H., Fives-Taylor P. Streptococcus parasanguis fimbria-associated adhesin fap1 is required for biofilm formation. Infection and immunity 2001, 69:2512-2519.
14. Ramboarina S., Garnett J.A., Zhou M., Li Y., Peng Z., Taylor J.D., Lee W.C., Bodey A., Murray J.W., Alguel Y., Bergeron J., Bardiaux B., Sawyer E., Isaacson R., Tagliaferri C., Cota E., Nilges M., Simpson P., Ruiz T., Wu H., Matthews S. Structural insights into serine-rich fimbriae from Gram-positive bacteria. Journal of Biological Chemistry 2010, 285:32446-32457.
15. Igarashi K., Kamiyama K., Yamada T. Measurement of pH in human dental plaque in vivo with an ion-sensitive transistor electrode. Archives of oral biology 1981, 26:203-207.
16. Welin-Neilands J., Svensater G. Acid tolerance of biofilm cells of Streptococcus mutans. Applied and environmental microbiology 2007, 73:5633-5638.
17. McNeill K., Hamilton I.R. Acid tolerance response of biofilm cells of Streptococcus mutans. FEMS microbiology letters 2003, 221:25-30.
18. Svensater G., Larsson U.B., Greif E.C., Cvitkovitch D.G., Hamilton I.R. Acid tolerance response and survival by oral bacteria. Oral microbiology and immunology 1997, 12:266-273.
19. J.A. Garnett, S. Ramboarina, W.C. Lee, C. Tagliaferri, W. Wu, S. Matthews, Crystallization and initial crystallographic analysis of the Streptococcus parasanguinis FW213 Fap1-NRalpha adhesive domain at pH 5.0, Acta Crystallogr Sect F Structural Biology and Crystallization Communications 67 274-276.
20. Leslie A.G. The integration of macromolecular diffraction data. Acta Crystallogr. D Biol. Crystallogr. 2006, 62:48-57.
21. Evans P. Scaling and assessment of data quality. Acta Crystallogr. D Biol. Crystallogr. 2006, 62:72-82.
22. Vagin A., Teplyakov A. Molecular replacement with MOLREP. Acta Crystallographica, Section D: Biological Crystallography 2010, 66:22-25.
23. Cowtan K. Recent developments in classical density modification. Acta Crystallographica, Section D: Biological Crystallography. 2010, 66:470-478.
24. Cowtan K. The Buccaneer software for automated model building. 1. Tracing protein chains. Acta Crystallogr. D Biol. Crystallogr. 2006, 62:1002-1011.
25. Murshudov G.N., Vagin A.A., Dodson E.J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 1997, 53:240-255.
26. Emsley P., Cowtan K. Coot: model-building tools for molecular graphics. Acta Crystallogr. D Biol. Crystallogr. 2004, 60:2126-2132.
27. Davis I.W., Leaver-Fay A., Chen V.B., Block J.N., Kapral G.J., Wang X., Murray L.W., Arendall W.B., Snoeyink J., Richardson J.S., Richardson D.C. MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Research 2007, 35:W375-383.
28. O'Toole G.A., Kolter R. Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signalling pathways: a genetic analysis. Molecular microbiology 1998, 28:449-461.
29. Castaneda C.A., Fitch C.A., Majumdar A., Khangulov V., Schlessman J.L., Garcia-Moreno B.E. Molecular determinants of the pKa values of Asp and Glu residues in staphylococcal nuclease. Proteins 2009, 77:570-588.
30. Karshikoff A., Spassov V., Cowan S.W., Ladenstein R., Schirmer T. Electrostatic properties of two porin channels from Escherichia coli. Journal of molecular biology 1994, 240:372-384.
31. Pace C.N., Grimsley G.R., Scholtz J.M. Protein ionizable groups: pK values and their contribution to protein stability and solubility. The Journal of biological chemistry 2009, 284:13285-13289.
32. Flocco M.M., Mowbray S.L. Strange bedfellows: interactions between acidic side-chains in proteins. Journal of molecular biology 1995, 254:96-105.
33. Krissinel E. Crystal contacts as nature's docking solutions. Journal of Computational Chemistry 2010, 31:133-143.
34. Pyburn T.M., Bensing B.A., Xiong Y.Q., Melancon B.J., Tomasiak T.M., Ward N.J., Yankovskaya V., Oliver K.M., Cecchini G., Sulikowski G.A., Tyska M.J., Sullam P.M., Iverson T.M. A Structural Model for Binding of the Serine-Rich Repeat Adhesin GspB to Host Carbohydrate Receptors. PLoS pathogens 2011, 7:e1002112.
35. Askarieh G., Hedhammar M., Nordling K., Saenz A., Casals C., Rising A., Johansson J., Knight S.D. Self-assembly of spider silk proteins is controlled by a pH-sensitive relay. Nature 2010, 465:236-238.
36. Pingali S.V., O'Neill H.M., McGaughey J., Urban V.S., Rempe C.S., Petridis L., Smith J.C., Evans B.R., Heller W.T. Small Angle Neutron Scattering Reveals pH-dependent Conformational Changes in Trichoderma reesei Cellobiohydrolase I: implications for enzymatic activity. The Journal of biological chemistry 2011, 286:32801-32809.