메뉴 건너뛰기




Volumn 13, Issue 1, 2012, Pages

Quantification and accurate normalisation of small RNAs through new custom RT-qPCR arrays demonstrates Salmonella-induced microRNAs in human monocytes

Author keywords

Array; Isomir; Macrophage; Microrna; Normalisation; Rt qpcr; Salmonella

Indexed keywords

MICRORNA; MICRORNA 146; MICRORNA 155; MICRORNA 21; MICRORNA 222; MICRORNA 23B; MICRORNA 24; MICRORNA 27A; MICRORNA 29; SMALL NUCLEAR RNA; TRANSFORMING GROWTH FACTOR BETA; UNCLASSIFIED DRUG;

EID: 84855801730     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-23     Document Type: Article
Times cited : (34)

References (29)
  • 1
    • 78751477191 scopus 로고    scopus 로고
    • Gene silencing by microRNAs: contributions of translational repression and mRNA decay
    • 10.1038/nrg2936, 21245828
    • Huntzinger E, Izaurralde E. Gene silencing by microRNAs: contributions of translational repression and mRNA decay. Nat Rev Genet 2011, 12(2):99-110. 10.1038/nrg2936, 21245828.
    • (2011) Nat Rev Genet , vol.12 , Issue.2 , pp. 99-110
    • Huntzinger, E.1    Izaurralde, E.2
  • 2
    • 18044377963 scopus 로고    scopus 로고
    • Principles of microRNA-target recognition
    • 10.1371/journal.pbio.0030085, 1043860, 15723116
    • Brennecke J, Stark A, Russell RB, Cohen SM. Principles of microRNA-target recognition. PLoS Biol 2005, 3(3):e85. 10.1371/journal.pbio.0030085, 1043860, 15723116.
    • (2005) PLoS Biol , vol.3 , Issue.3
    • Brennecke, J.1    Stark, A.2    Russell, R.B.3    Cohen, S.M.4
  • 3
    • 29144505309 scopus 로고    scopus 로고
    • The widespread impact of mammalian MicroRNAs on mRNA repression and evolution
    • 10.1126/science.1121158, 16308420
    • Farh KK, Grimson A, Jan C, Lewis BP, Johnston WK, Lim LP, Burge CB, Bartel DP. The widespread impact of mammalian MicroRNAs on mRNA repression and evolution. Science 2005, 310(5755):1817-1821. 10.1126/science.1121158, 16308420.
    • (2005) Science , vol.310 , Issue.5755 , pp. 1817-1821
    • Farh, K.K.1    Grimson, A.2    Jan, C.3    Lewis, B.P.4    Johnston, W.K.5    Lim, L.P.6    Burge, C.B.7    Bartel, D.P.8
  • 6
    • 80052033649 scopus 로고    scopus 로고
    • The microRNA miR-29 controls innate and adaptive immune responses to intracellular bacterial infection by targeting interferon-gamma
    • 10.1038/ni.2073, 21785411
    • Ma F, Xu S, Liu X, Zhang Q, Xu X, Liu M, Hua M, Li N, Yao H, Cao X. The microRNA miR-29 controls innate and adaptive immune responses to intracellular bacterial infection by targeting interferon-gamma. Nature immunology 2011, 12(9):861-869. 10.1038/ni.2073, 21785411.
    • (2011) Nature immunology , vol.12 , Issue.9 , pp. 861-869
    • Ma, F.1    Xu, S.2    Liu, X.3    Zhang, Q.4    Xu, X.5    Liu, M.6    Hua, M.7    Li, N.8    Yao, H.9    Cao, X.10
  • 7
    • 79956122723 scopus 로고    scopus 로고
    • Analysis of the host microRNA response to Salmonella uncovers the control of major cytokines by the let-7 family
    • 10.1038/emboj.2011.94, 21468030
    • Schulte LN, Eulalio A, Mollenkopf HJ, Reinhardt R, Vogel J. Analysis of the host microRNA response to Salmonella uncovers the control of major cytokines by the let-7 family. The EMBO journal 2011, 30(10):1977-1989. 10.1038/emboj.2011.94, 21468030.
    • (2011) The EMBO journal , vol.30 , Issue.10 , pp. 1977-1989
    • Schulte, L.N.1    Eulalio, A.2    Mollenkopf, H.J.3    Reinhardt, R.4    Vogel, J.5
  • 8
    • 79956353001 scopus 로고    scopus 로고
    • Integrated microRNA-mRNA-analysis of human monocyte derived macrophages upon Mycobacterium avium subsp. hominissuis infection
    • 10.1371/journal.pone.0020258, 3101234, 21629653
    • Sharbati J, Lewin A, Kutz-Lohroff B, Kamal E, Einspanier R, Sharbati S. Integrated microRNA-mRNA-analysis of human monocyte derived macrophages upon Mycobacterium avium subsp. hominissuis infection. PloS one 2011, 6(5):e20258. 10.1371/journal.pone.0020258, 3101234, 21629653.
    • (2011) PloS one , vol.6 , Issue.5
    • Sharbati, J.1    Lewin, A.2    Kutz-Lohroff, B.3    Kamal, E.4    Einspanier, R.5    Sharbati, S.6
  • 9
    • 44349101865 scopus 로고    scopus 로고
    • MiR-Q: a novel quantitative RT-PCR approach for the expression profiling of small RNA molecules such as miRNAs in a complex sample
    • 10.1186/1471-2199-9-34, 2374797, 18400113
    • Sharbati-Tehrani S, Kutz-Lohroff B, Bergbauer R, Scholven J, Einspanier R. miR-Q: a novel quantitative RT-PCR approach for the expression profiling of small RNA molecules such as miRNAs in a complex sample. BMC Mol Biol 2008, 9(1):34. 10.1186/1471-2199-9-34, 2374797, 18400113.
    • (2008) BMC Mol Biol , vol.9 , Issue.1 , pp. 34
    • Sharbati-Tehrani, S.1    Kutz-Lohroff, B.2    Bergbauer, R.3    Scholven, J.4    Einspanier, R.5
  • 12
    • 77957018960 scopus 로고    scopus 로고
    • In vitro inhibition of CSFV replication by retroviral vector-mediated RNA interference
    • 10.1016/j.jviromet.2010.07.036, 20691206
    • Li J, Guo H, Shi Z, Tu C. In vitro inhibition of CSFV replication by retroviral vector-mediated RNA interference. Journal of virological methods 2010, 169(2):316-321. 10.1016/j.jviromet.2010.07.036, 20691206.
    • (2010) Journal of virological methods , vol.169 , Issue.2 , pp. 316-321
    • Li, J.1    Guo, H.2    Shi, Z.3    Tu, C.4
  • 13
    • 79952846843 scopus 로고    scopus 로고
    • Sirt1 and mir-9 expression is regulated during glucose-stimulated insulin secretion in pancreatic beta-islets
    • 10.1111/j.1742-4658.2011.08042.x, 21288303
    • Ramachandran D, Roy U, Garg S, Ghosh S, Pathak S, Kolthur-Seetharam U. Sirt1 and mir-9 expression is regulated during glucose-stimulated insulin secretion in pancreatic beta-islets. The FEBS journal 2011, 278(7):1167-1174. 10.1111/j.1742-4658.2011.08042.x, 21288303.
    • (2011) The FEBS journal , vol.278 , Issue.7 , pp. 1167-1174
    • Ramachandran, D.1    Roy, U.2    Garg, S.3    Ghosh, S.4    Pathak, S.5    Kolthur-Seetharam, U.6
  • 14
  • 15
    • 78751561643 scopus 로고    scopus 로고
    • Microfluidic-based multiplex qRT-PCR identifies diagnostic and prognostic microRNA signatures in the sera of prostate cancer patients
    • 10.1158/0008-5472.CAN-10-1229, 3022112, 21098088
    • Moltzahn F, Olshen AB, Baehner L, Peek A, Fong L, Stoppler H, Simko J, Hilton JF, Carroll P, Blelloch R. Microfluidic-based multiplex qRT-PCR identifies diagnostic and prognostic microRNA signatures in the sera of prostate cancer patients. Cancer research 2011, 71(2):550-560. 10.1158/0008-5472.CAN-10-1229, 3022112, 21098088.
    • (2011) Cancer research , vol.71 , Issue.2 , pp. 550-560
    • Moltzahn, F.1    Olshen, A.B.2    Baehner, L.3    Peek, A.4    Fong, L.5    Stoppler, H.6    Simko, J.7    Hilton, J.F.8    Carroll, P.9    Blelloch, R.10
  • 17
    • 70450237168 scopus 로고    scopus 로고
    • MicroRNA expression profiling of elongated cloned and in vitro-fertilized bovine embryos
    • 10.1016/j.theriogenology.2009.08.003, 19836069
    • Castro FO, Sharbati S, Rodriguez-Alvarez LL, Cox JF, Hultschig C, Einspanier R. MicroRNA expression profiling of elongated cloned and in vitro-fertilized bovine embryos. Theriogenology 2010, 73(1):71-85. 10.1016/j.theriogenology.2009.08.003, 19836069.
    • (2010) Theriogenology , vol.73 , Issue.1 , pp. 71-85
    • Castro, F.O.1    Sharbati, S.2    Rodriguez-Alvarez, L.L.3    Cox, J.F.4    Hultschig, C.5    Einspanier, R.6
  • 18
    • 50849133229 scopus 로고    scopus 로고
    • Concatameric cloning of porcine microRNA molecules after assembly PCR
    • 10.1016/j.bbrc.2008.08.048, 18722348
    • Sharbati-Tehrani S, Kutz-Lohroff B, Scholven J, Einspanier R. Concatameric cloning of porcine microRNA molecules after assembly PCR. Biochem Biophys Res Commun 2008, 375(3):484-489. 10.1016/j.bbrc.2008.08.048, 18722348.
    • (2008) Biochem Biophys Res Commun , vol.375 , Issue.3 , pp. 484-489
    • Sharbati-Tehrani, S.1    Kutz-Lohroff, B.2    Scholven, J.3    Einspanier, R.4
  • 20
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 2002, 3(7).
    • (2002) Genome Biol , vol.3 , Issue.7
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 21
    • 80052527459 scopus 로고    scopus 로고
    • Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity
    • 10.1101/gr.118059.110, 21813625
    • Wyman SK, Knouf EC, Parkin RK, Fritz BR, Lin DW, Dennis LM, Krouse MA, Webster PJ, Tewari M. Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity. Genome research 2011, 21(9):1450-1461. 10.1101/gr.118059.110, 21813625.
    • (2011) Genome research , vol.21 , Issue.9 , pp. 1450-1461
    • Wyman, S.K.1    Knouf, E.C.2    Parkin, R.K.3    Fritz, B.R.4    Lin, D.W.5    Dennis, L.M.6    Krouse, M.A.7    Webster, P.J.8    Tewari, M.9
  • 22
    • 79959386594 scopus 로고    scopus 로고
    • A comprehensive survey of miRNA repertoire and 3' addition events in the placentas of patients with pre-eclampsia from high-throughput sequencing
    • 10.1371/journal.pone.0021072, 3120834, 21731650
    • Guo L, Yang Q, Lu J, Li H, Ge Q, Gu W, Bai Y, Lu Z. A comprehensive survey of miRNA repertoire and 3' addition events in the placentas of patients with pre-eclampsia from high-throughput sequencing. PloS one 2011, 6(6):e21072. 10.1371/journal.pone.0021072, 3120834, 21731650.
    • (2011) PloS one , vol.6 , Issue.6
    • Guo, L.1    Yang, Q.2    Lu, J.3    Li, H.4    Ge, Q.5    Gu, W.6    Bai, Y.7    Lu, Z.8
  • 23
    • 33747608638 scopus 로고    scopus 로고
    • NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses
    • 10.1073/pnas.0605298103, 1567904, 16885212
    • Taganov KD, Boldin MP, Chang KJ, Baltimore D. NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses. Proceedings of the National Academy of Sciences of the United States of America 2006, 103(33):12481-12486. 10.1073/pnas.0605298103, 1567904, 16885212.
    • (2006) Proceedings of the National Academy of Sciences of the United States of America , vol.103 , Issue.33 , pp. 12481-12486
    • Taganov, K.D.1    Boldin, M.P.2    Chang, K.J.3    Baltimore, D.4
  • 24
    • 77957372056 scopus 로고    scopus 로고
    • Increased miR-21 expression during human monocyte differentiation into DCs
    • Cekaite L, Clancy T, Sioud M. Increased miR-21 expression during human monocyte differentiation into DCs. Frontiers in bioscience (Elite edition) 2010, 2:818-828.
    • (2010) Frontiers in bioscience (Elite edition) , vol.2 , pp. 818-828
    • Cekaite, L.1    Clancy, T.2    Sioud, M.3
  • 25
    • 76749170274 scopus 로고    scopus 로고
    • Induction of microRNAs, mir-155, mir-222, mir-424 and mir-503, promotes monocytic differentiation through combinatorial regulation
    • 10.1038/leu.2009.246, 19956200
    • Forrest AR, Kanamori-Katayama M, Tomaru Y, Lassmann T, Ninomiya N, Takahashi Y, de Hoon MJ, Kubosaki A, Kaiho A, Suzuki M, et al. Induction of microRNAs, mir-155, mir-222, mir-424 and mir-503, promotes monocytic differentiation through combinatorial regulation. Leukemia 2010, 24(2):460-466. 10.1038/leu.2009.246, 19956200.
    • (2010) Leukemia , vol.24 , Issue.2 , pp. 460-466
    • Forrest, A.R.1    Kanamori-Katayama, M.2    Tomaru, Y.3    Lassmann, T.4    Ninomiya, N.5    Takahashi, Y.6    de Hoon, M.J.7    Kubosaki, A.8    Kaiho, A.9    Suzuki, M.10
  • 26
    • 79952574960 scopus 로고    scopus 로고
    • Down-regulation of miR-23b may contribute to activation of the TGF-beta1/Smad3 signalling pathway during the termination stage of liver regeneration
    • 10.1016/j.febslet.2011.02.031, 21354414
    • Yuan B, Dong R, Shi D, Zhou Y, Zhao Y, Miao M, Jiao B. Down-regulation of miR-23b may contribute to activation of the TGF-beta1/Smad3 signalling pathway during the termination stage of liver regeneration. FEBS letters 2011, 585(6):927-934. 10.1016/j.febslet.2011.02.031, 21354414.
    • (2011) FEBS letters , vol.585 , Issue.6 , pp. 927-934
    • Yuan, B.1    Dong, R.2    Shi, D.3    Zhou, Y.4    Zhao, Y.5    Miao, M.6    Jiao, B.7
  • 27
    • 0033399104 scopus 로고    scopus 로고
    • Bidirectional regulation of macrophage function by TGF-beta
    • 10.1016/S1286-4579(99)00257-9, 10611755
    • Ashcroft GS. Bidirectional regulation of macrophage function by TGF-beta. Microbes and infection/Institut Pasteur 1999, 1(15):1275-1282. 10.1016/S1286-4579(99)00257-9, 10611755.
    • (1999) Microbes and infection/Institut Pasteur , vol.1 , Issue.15 , pp. 1275-1282
    • Ashcroft, G.S.1
  • 28
    • 75149134829 scopus 로고    scopus 로고
    • Post-transcriptional regulation of miR-27 in murine cytomegalovirus infection
    • 10.1261/rna.1819210, 2811660, 20047990
    • Buck AH, Perot J, Chisholm MA, Kumar DS, Tuddenham L, Cognat V, Marcinowski L, Dolken L, Pfeffer S. Post-transcriptional regulation of miR-27 in murine cytomegalovirus infection. RNA 2010, 16(2):307-315. 10.1261/rna.1819210, 2811660, 20047990.
    • (2010) RNA , vol.16 , Issue.2 , pp. 307-315
    • Buck, A.H.1    Perot, J.2    Chisholm, M.A.3    Kumar, D.S.4    Tuddenham, L.5    Cognat, V.6    Marcinowski, L.7    Dolken, L.8    Pfeffer, S.9
  • 29
    • 78651293534 scopus 로고    scopus 로고
    • MiRBase: integrating microRNA annotation and deep-sequencing data
    • Database
    • Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic acids research 2011, (39 Database):D152-157.
    • (2011) Nucleic acids research , Issue.39
    • Kozomara, A.1    Griffiths-Jones, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.