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Volumn 13, Issue 1, 2012, Pages

Sequence based polymorphic (SBP) marker technology for targeted genomic regions: Its application in generating a molecular map of the Arabidopsis thaliana genome

Author keywords

Niederzenz; Nonhost resistance; Phytophthora sojae; Sequence based polymorphic marker; Shore analysis; Solexa sequencing

Indexed keywords

GENOMIC DNA; MOLECULAR MARKER; RESTRICTION ENDONUCLEASE; SEQUENCE BASED POLYMORPHIC MARKER; UNCLASSIFIED DRUG;

EID: 84855721429     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-20     Document Type: Article
Times cited : (16)

References (25)
  • 1
    • 0003844255 scopus 로고
    • Selective restriction fragment amplification: a general method for DNA fingerprinting
    • Publication 0534858 A1, bulletin 93/13
    • Zabeau M, Vos P. Selective restriction fragment amplification: a general method for DNA fingerprinting. European Patent Office 1993, Publication 0534858 A1, bulletin 93/13.
    • (1993) European Patent Office
    • Zabeau, M.1    Vos, P.2
  • 2
    • 0019302053 scopus 로고
    • Construction of a genetic linkage map in man using restriction fragment length polymorphisms
    • 1686077, 6247908
    • Botstein D, White R, Skolnick M, Davis OW. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 1980, 32:314-331. 1686077, 6247908.
    • (1980) Am J Hum Genet , vol.32 , pp. 314-331
    • Botstein, D.1    White, R.2    Skolnick, M.3    Davis, O.W.4
  • 3
    • 0025008570 scopus 로고
    • DNA polymorphisms amplified by arbitrary primers are useful as genetic markers
    • 10.1093/nar/18.22.6531, 332606, 1979162
    • Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 1990, 18:6531-6535. 10.1093/nar/18.22.6531, 332606, 1979162.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6531-6535
    • Williams, J.G.K.1    Kubelik, A.R.2    Livak, K.J.3    Rafalski, J.A.4    Tingey, S.V.5
  • 4
    • 0027476991 scopus 로고
    • DAF-amplified fragments can be used as markers for DNA from pulse field gels
    • Kolchinsky AM, Funke RP, Gresshoff PM. DAF-amplified fragments can be used as markers for DNA from pulse field gels. Biotechniques 1993, 14:400-403.
    • (1993) Biotechniques , vol.14 , pp. 400-403
    • Kolchinsky, A.M.1    Funke, R.P.2    Gresshoff, P.M.3
  • 5
    • 41249087706 scopus 로고    scopus 로고
    • SNP high-throughput screening in grapevine using the SNPlex™ genotyping system
    • 10.1186/1471-2229-8-12, 2268689, 18226250
    • Pindo M, Vezzulli S, Coppola G, Cartwright D, Zharkikh A, Velasco R, Troggio M. SNP high-throughput screening in grapevine using the SNPlex™ genotyping system. BMC Plant Biol 2008, 8:12. 10.1186/1471-2229-8-12, 2268689, 18226250.
    • (2008) BMC Plant Biol , vol.8 , pp. 12
    • Pindo, M.1    Vezzulli, S.2    Coppola, G.3    Cartwright, D.4    Zharkikh, A.5    Velasco, R.6    Troggio, M.7
  • 6
    • 0027650566 scopus 로고
    • A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers
    • 10.1046/j.1365-313X.1993.04020403.x, 8106085
    • Konieczny A, Ausubel FM. A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J 1993, 4:403-410. 10.1046/j.1365-313X.1993.04020403.x, 8106085.
    • (1993) Plant J , vol.4 , pp. 403-410
    • Konieczny, A.1    Ausubel, F.M.2
  • 7
    • 0024582686 scopus 로고
    • Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction
    • 1715443, 2916582
    • Weber JL, May PE. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet 1989, 44:388-396. 1715443, 2916582.
    • (1989) Am J Hum Genet , vol.44 , pp. 388-396
    • Weber, J.L.1    May, P.E.2
  • 8
    • 0028055069 scopus 로고
    • Assignment of 30 microsatellite loci to the linkage map of Arabidopsis
    • 10.1006/geno.1994.1023, 8188214
    • Bell CJ, Ecker JR. Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics 1994, 19:137-144. 10.1006/geno.1994.1023, 8188214.
    • (1994) Genomics , vol.19 , pp. 137-144
    • Bell, C.J.1    Ecker, J.R.2
  • 9
    • 33846874137 scopus 로고    scopus 로고
    • Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers
    • 10.1101/gr.5681207, 1781356, 17189378
    • Miller MR, Dunham JP, Amores A, Cresko WA, Johnson EA. Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers. Genome Res 2007, 17:240-248. 10.1101/gr.5681207, 1781356, 17189378.
    • (2007) Genome Res , vol.17 , pp. 240-248
    • Miller, M.R.1    Dunham, J.P.2    Amores, A.3    Cresko, W.A.4    Johnson, E.A.5
  • 10
    • 79959435199 scopus 로고    scopus 로고
    • Genome-wide genetic marker discovery and genotyping using next-generation sequencing
    • 10.1038/nrg3012, 21681211
    • Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, Blaxter ML. Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat Rev Genet 2011, 12:499-510. 10.1038/nrg3012, 21681211.
    • (2011) Nat Rev Genet , vol.12 , pp. 499-510
    • Davey, J.W.1    Hohenlohe, P.A.2    Etter, P.D.3    Boone, J.Q.4    Catchen, J.M.5    Blaxter, M.L.6
  • 11
    • 79956314887 scopus 로고    scopus 로고
    • Genotype and SNP calling from next-generation sequencing data
    • 10.1038/nrg2986, 21587300
    • Nielsen R, Paul JS, Albrechtsen A, Song YS. Genotype and SNP calling from next-generation sequencing data. Nat Rev Genet 2011, 12:443-451. 10.1038/nrg2986, 21587300.
    • (2011) Nat Rev Genet , vol.12 , pp. 443-451
    • Nielsen, R.1    Paul, J.S.2    Albrechtsen, A.3    Song, Y.S.4
  • 12
    • 79958248844 scopus 로고    scopus 로고
    • SNP discovery by transcriptome pyrosequencing
    • Barbazuk WB, Schnable PS. SNP discovery by transcriptome pyrosequencing. In Meth Mol Biol 2011, 729:225-246.
    • (2011) In Meth Mol Biol , vol.729 , pp. 225-246
    • Barbazuk, W.B.1    Schnable, P.S.2
  • 13
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • 10.1038/35048692, 11130711, The Arabidopsis Initiative
    • The Arabidopsis Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408:796-815. 10.1038/35048692, 11130711, The Arabidopsis Initiative.
    • (2000) Nature , vol.408 , pp. 796-815
  • 15
    • 44849134096 scopus 로고    scopus 로고
    • Detecting polymorphic regions in Arabidopsis thaliana with resequencing microarrays
    • 10.1101/gr.070169.107, 2413159, 18323538
    • Zeller G, Clark RM, Schneeberger K, Bohlen A, Weigel D, Ratsch G. Detecting polymorphic regions in Arabidopsis thaliana with resequencing microarrays. Genome Res 2008, 18:918-929. 10.1101/gr.070169.107, 2413159, 18323538.
    • (2008) Genome Res , vol.18 , pp. 918-929
    • Zeller, G.1    Clark, R.M.2    Schneeberger, K.3    Bohlen, A.4    Weigel, D.5    Ratsch, G.6
  • 16
    • 57149099394 scopus 로고    scopus 로고
    • Sequencing of natural strains of Arabidopsis thaliana with short reads
    • 10.1101/gr.080200.108, 2593571, 18818371
    • Ossowski S, Schneeberger K, Clark RM, Lanz C, Warthmann N, Weigel D. Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Res 2008, 18:2024-2033. 10.1101/gr.080200.108, 2593571, 18818371.
    • (2008) Genome Res , vol.18 , pp. 2024-2033
    • Ossowski, S.1    Schneeberger, K.2    Clark, R.M.3    Lanz, C.4    Warthmann, N.5    Weigel, D.6
  • 17
    • 0035983615 scopus 로고    scopus 로고
    • Arabidopsis map-based cloning in the post-genome era
    • 10.1104/pp.003533, 1540230, 12068090
    • Jander G, Norris SR, Rounsley SD, Bush DF, Levin IM, Last RL. Arabidopsis map-based cloning in the post-genome era. Plant Physiol 2002, 129:440-450. 10.1104/pp.003533, 1540230, 12068090.
    • (2002) Plant Physiol , vol.129 , pp. 440-450
    • Jander, G.1    Norris, S.R.2    Rounsley, S.D.3    Bush, D.F.4    Levin, I.M.5    Last, R.L.6
  • 18
    • 50649122770 scopus 로고    scopus 로고
    • EagleView: A genome assembly viewer for next-generation sequencing technologies
    • 10.1101/gr.076067.108, 2527701, 18550804
    • Huang W, Marth G. EagleView: A genome assembly viewer for next-generation sequencing technologies. Genome Res 2008, 18:1538-1543. 10.1101/gr.076067.108, 2527701, 18550804.
    • (2008) Genome Res , vol.18 , pp. 1538-1543
    • Huang, W.1    Marth, G.2
  • 19
    • 62349102325 scopus 로고    scopus 로고
    • Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond
    • 10.1016/j.pbi.2008.11.004, 2723731, 19157957
    • Lister R, Gregory BD, Ecker JR. Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond. Curr Opin Plant Biol 2009, 12:107-118. 10.1016/j.pbi.2008.11.004, 2723731, 19157957.
    • (2009) Curr Opin Plant Biol , vol.12 , pp. 107-118
    • Lister, R.1    Gregory, B.D.2    Ecker, J.R.3
  • 21
    • 0032078072 scopus 로고    scopus 로고
    • DCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics
    • 10.1046/j.1365-313X.1998.00124.x, 9628033
    • Neff MM, Neff JD, Chory J, Pepper AE. dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. Plant J 1998, 14:387-392. 10.1046/j.1365-313X.1998.00124.x, 9628033.
    • (1998) Plant J , vol.14 , pp. 387-392
    • Neff, M.M.1    Neff, J.D.2    Chory, J.3    Pepper, A.E.4
  • 23
    • 0033926906 scopus 로고    scopus 로고
    • Positional cloning in Arabidopsis. Why it feels good to have a genome initiative working for you
    • 10.1104/pp.123.3.795, 1539260, 10889228
    • Lukowitz W, Gillmor CS, Scheible W-R. Positional cloning in Arabidopsis. Why it feels good to have a genome initiative working for you. Plant Physiol 2000, 123:795-806. 10.1104/pp.123.3.795, 1539260, 10889228.
    • (2000) Plant Physiol , vol.123 , pp. 795-806
    • Lukowitz, W.1    Gillmor, C.S.2    Scheible, W.-R.3
  • 24
    • 41249096306 scopus 로고    scopus 로고
    • Using quality scores and longer reads improves accuracy of Solexa read mapping
    • 10.1186/1471-2105-9-128, 2335322, 18307793
    • Smith A, Xuan Z, Zhang M. Using quality scores and longer reads improves accuracy of Solexa read mapping. BMC Bioinformatics 2008, 9:128. 10.1186/1471-2105-9-128, 2335322, 18307793.
    • (2008) BMC Bioinformatics , vol.9 , pp. 128
    • Smith, A.1    Xuan, Z.2    Zhang, M.3


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