Non-covalent monolayer-piercing anchoring of lipophilic nucleic acids: Preparation, characterization, and sensing applications

Journal of the American Chemical Society

Volumn 134, Issue 1, 2012, Pages 280-292

  Kwiat, Moria ^a   Elnathan, Roey ^a   Kwak, Minseok ^b   De Vries, Jan Willem ^b   Pevzner, Alexander ^a   Engel, Yoni ^a   Burstein, Larisa ^a   Khatchtourints, Artium ^a   Lichtenstein, Amir ^a   Flaxer, Eli ^a   Herrmann, Andreas ^b   Patolsky, Fernando ^a  

^a TEL AVIV UNIVERSITY   (Israel)

^b UNIVERSITY OF GRONINGEN   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

AMPHIPHILICS; BIFUNCTIONAL LINKER MOLECULE; BIOMACROMOLECULES; CONFOCAL FLUORESCENCE IMAGING; DEGREE OF SPECIFICITY; DEVICE ARRAYS; DNA LAYERS; DNA MODIFICATION; DNA MOLECULES; DNA PROBE; DNA TARGETS; EXTERNAL STIMULUS; FUNCTIONAL INTERFACE; GENERAL METHOD; GLASS SUBSTRATES; GOLD ELECTRODES; HIGHLY SENSITIVE; HYDROPHOBIC MOLECULES; HYDROPHOBIC MONOLAYERS; INCUBATION TIME; INITIAL CONCENTRATION; INORGANIC SUBSTRATES; MICROARRAY TECHNOLOGIES; MIXED SAM; NON-COVALENT IMMOBILIZATION; NUCLEOBASES; SAMS; SEMI-CONDUCTOR SURFACES; SENSING APPLICATIONS; SENSING LAYERS; SILICON NANOWIRES; SINGLE-BASE MISMATCH; SURFACE COVERAGES; SURFACE DENSITY; SURFACE LAYERS;

ATOMIC FORCE MICROSCOPY; ATOMIC SPECTROSCOPY; BIOMOLECULES; BIOSENSORS; CONTACT ANGLE; FIELD EFFECT TRANSISTORS; FUNCTIONAL GROUPS; HYDROPHOBICITY; MOLECULES; MONOLAYERS; NANOWIRES; PROBES; QUARTZ; SEMICONDUCTING SILICON; SEMICONDUCTING SILICON COMPOUNDS; SUBSTRATES; SURFACE STRUCTURE; X RAY PHOTOELECTRON SPECTROSCOPY;

DNA;

COMPLEMENTARY DNA; LIPID; NANOWIRE; NUCLEIC ACID; NUCLEIC ACID BASE; SILICON;

ARTICLE; ATOMIC FORCE MICROSCOPY; CONFOCAL MICROSCOPY; CONTACT ANGLE; DNA MODIFICATION; DNA PROBE; DNA STRUCTURE; ELECTRODE; ELLIPSOMETRY; FIELD EFFECT TRANSISTOR; HYDROPHOBICITY; INCUBATION TIME; METHODOLOGY; MOLECULE; QUARTZ CRYSTAL MICROBALANCE; ROENTGEN SPECTROSCOPY; SEMICONDUCTOR; STIMULUS; TEMPERATURE;

BASE SEQUENCE; BIOSENSING TECHNIQUES; DNA; ELECTRODES; GLASS; GOLD; HOT TEMPERATURE; HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; NUCLEIC ACID HYBRIDIZATION; OLIGODEOXYRIBONUCLEOTIDES; SEMICONDUCTORS; SILICON; SURFACE PROPERTIES;

EID: 84855695317     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja206639d     Document Type: Article

References (81)

1. Chen, K.-I.; Li, B.-R.; Chen, Y.-T. Nano Today 2011, 6, 131
2. Kasemo, B. Surf. Sci. 2002, 500, 656
3. Cattani-Scholz, A.; Pedone, D.; Blobner, F.; Abstreiter, G.; Schwartz, J.; Tornow, M.; Andruzzi, L. Biomacromolecules 2009, 10, 489
4. Ray, S.; Mehta, G.; Srivastava, S. J. Proteom. 2010, 10, 731
5. Stutzmann, M.; Garrido, J. A.; Eickhoff, M.; Brandt, M. S. Phys. Status Solidi A 2006, 203, 3424
6. Li, H.; Carter, J. D.; LaBean, T. H. Mater. Today. 2009, 12, 24
7. Chow, D. C.; Johannes, M. S.; Lee, W.-K.; Clark, R. L.; Zauscher, S.; Chilkoti, A. Mater. Today. 2005, 8, 30
8. He, Y.; Su, S.; Xu, T.; Zhong, Y.; Zapien, J. A.; Li, J.; Fan, C.; Lee, S.-T. Nano Today. 2011, 6, 122
9. Socher, E.; Bethge, L.; Knoll, A.; Jungnick, N.; Herrmann, A.; Seitz, O. Angew. Chem., Int. Ed. 2008, 47, 9555
10. Mallouk, T. E.; Yang, P. J. Am. Chem. Soc. 2009, 131, 7937
11. Weizmann, Y.; Chenoweth, D. M.; Swager, T. M. J. Am. Chem. Soc. 2011, 133, 3238
12. He, Y.; Fan, C.; Lee, S.-T. Nano Today. 2010, 5, 282
13. Roy, S.; Gao, Z. Nano Today. 2009, 4, 318
14. Yang, P.; Yan, R.; Fardy, M. Nano Lett. 2010, 10, 1529
15. Peelle, B. R.; Krauland, E. M.; Wittrup, K. D.; Belcher, A. M. Acta Biomater. 2005, 1, 145
16. Kang, J.; Loew, M.; Arbuzova, A.; Andreou, I.; Dähne, L. Adv. Mater. 2010, 22, 3548
17. Curreli, M.; Li, C.; Sun, Y.; Lei, B.; Gundersen, M. A.; Thompson, M. E.; Zhou, C. J. Am. Chem. Soc. 2005, 127, 6922
18. Wang, J.; Liu, G.; Jan, M. R. J. Am. Chem. Soc. 2004, 126, 3010
19. Star, A.; Tu, E.; Niemann, J.; Gabriel, J.-C. P.; Joiner, C. S.; Valcke, C. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 921
20. Weizmann, Y.; Chenoweth, D. M.; Swager, T. M. J. Am. Chem. Soc. 2010, 132, 14009
21. Patolsky, F.; Zheng, G.; Lieber, C. M. Anal. Chem. 2006, 78, 4260
22. Patolsky, F.; Zheng, G.; Lieber, C. M. Nanomed. 2006, 1, 51
23. Wu, Y.; Xiang, J.; Yang, C.; Lu, W.; Lieber, C. M. Nature 2004, 430, 61
24. Weizmann, Y.; Elnathan, R.; Lioubashevski, O.; Willner, I. Nano Lett. 2005, 5, 741
25. Prigodich, A. E.; Lee, O.-S.; Daniel, W. L.; Seferos, D. S.; Schatz, G. C.; Mirkin, C. A. J. Am. Chem. Soc. 2010, 132, 10638
26. Macfarlane, R. J.; Lee, B.; Hill, H. D.; Senesi, A. J.; Seifert, S.; Mirkin, C. A. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 10493
27. Weizmann, Y.; Elnathan, R.; Lioubashevski, O.; Willner, I. J. Am. Chem. Soc. 2005, 127, 12666
28. Kelley, S. O.; Boon, E. M.; Barton, J. K.; Jackson, N. M.; Hill, M. G. Nucleic Acids Res. 1999, 27, 4830
29. Kang, T.; Yoo, S. M.; Yoon, I.; Lee, S. Y.; Kim, B. Nano Lett. 2010, 10, 1189
30. Slinker, J. D.; Muren, N. B.; Gorodetsky, A. A.; Barton, J. K. J. Am. Chem. Soc. 2010, 132, 2769
31. Slinker, J. D.; Muren, N. B.; Renfrew, S. E.; Barton, J. K. Nat. Chem 2011, 3, 228
32. Stoeva, S. I.; Lee, J.-S.; Thaxton, C. S.; Mirkin, C. A. Angew. Chem., Int. Ed. 2006, 45, 3303
33. Chow, D. C.; Lee, W.-K.; Zauscher, S.; Chilkoti, A. J. Am. Chem. Soc. 2005, 127, 14122
34. Wang, X.; Ozkan, C. S. Nano Lett. 2008, 8, 398
35. Li, Z.; Chen, Y.; Li, X.; Kamins, T. I.; Nauka, K.; Williams, R. S. Nano Lett. 2004, 4, 245
36. Zhou, D.; Ying, L.; Hong, X.; Hall, E. A.; Abell, C.; Klenerman, D. Langmuir 2008, 24, 1659
37. Zhang, G.-J.; Zhang, G.; Chua, J. H.; Chee, R.-E.; Wong, E. H.; Agarwal, A.; Buddharaju, K. D.; Singh, N.; Gao, Z.; Balasubramanian, N. Nano Lett. 2008, 8, 1066
38. Jiang, G.; Susha, A. S.; Lutich, A. A.; Stefani, F. D.; Feldmann, J.; Rogach, A. L. ACS Nano 2009, 3, 4127
39. Ingebrandt, S.; Offenhäusser, A. Phys. Status Solidi A 2006, 203, 3399
40. Erokhina, S.; Berzina, T.; Cristofolini, L.; Konovalov, O.; Erokhin, V.; Fontana, M. P. Langmuir 2007, 23, 4414
41. Kotzabasakis, V.; Georgopoulou, E.; Pitsikalis, M.; Hadjichristidis, N.; Papadogianakis, G. J. Mol. Catal. A: Chem. 2005, 231, 93
42. Kakizawa, Y.; Kataoka, K. Adv. Drug Delivery Rev. 2002, 54, 203
43. Kataoka, K.; Harada, A.; Nagasaki, Y. Adv. Drug Delivery Rev. 2001, 47, 113
44. Savić, R.; Luo, L.; Eisenberg, A.; Maysinger, D. Science 2003, 300, 615
45. Ding, K.; Alemdaroglu, F. E.; Börsch, M.; Berger, R.; Herrmann, A. Angew. Chem., Int. Ed. 2007, 46, 1172
46. Alemdaroglu, F. E.; Ding, K.; Berger, R.; Herrmann, A. Angew. Chem., Int. Ed. 2006, 45, 4206
47. Li, Z.; Zhang, Y.; Fullhart, P.; Mirkin, C. A. Nano Lett. 2004, 4, 1055
48. Jeong, J. H.; Park, T. G. Bioconjugate Chem. 2001, 12, 917
49. Gore, T.; Dori, Y.; Talmon, Y.; Tirrell, M.; Bianco-Peled, H. Langmuir 2001, 17, 5352
50. Yu, Y.-C.; Berndt, P.; Tirrell, M.; Fields, G. B. J. Am. Chem. Soc. 1996, 118, 12515
51. Pfeiffer, I.; Höök, F. J. Am. Chem. Soc. 2004, 126, 10224
52. Chan, Y.-H. M.; van Lengerich, B.; Boxer, S. G. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 979
53. Kwak, M.; Minten, I. J.; Anaya, D.-M.; Musser, A. J.; Brasch, M.; Nolte, R. J. M.; Müllen, K.; Cornelissen, J. J. L. M.; Herrmann, A. J. Am. Chem. Soc. 2010, 132, 7834
54. Anaya, M.; Kwak, M.; Musser, A. J.; Müllen, K.; Herrmann, A. Chem.-Eur. J 2010, 16, 12852
55. Baralia, G. G.; Duwez, A. S.; Nysten, B.; Jonas, A. M. Langmuir 2005, 21, 6825
56. Collard, D. M.; Fox, M. A. Langmuir 1991, 7, 1192
57. Chen, L. J. J. Mater. Chem. 2007, 17, 4639
58. Fritz, J.; Baller, M. K.; Lang, H. P.; Rothuizen, H.; Vettiger, P.; Meyer, E.-J.; Güntherodt, H.; Gerber, C.; Gimzewski, J. K. Science 2000, 288, 316
59. Ilic, B.; Yang, Y.; Aubin, K.; Reichenbach, R.; Krylov, S.; Craighead, H. G. Nano Lett. 2005, 5, 925
60. Sinensky, A. K.; Belcher, A. M. Nat. Nanotechnol. 2007, 2, 653
61. Mertens, J.; Rogero, C.; Calleja, M.; Ramos, D.; Martin-Gago, J. A.; Briones, C.; Tamayo, J. Nat. Nanotechnol. 2008, 3, 301
62. Levicky, R.; Herne, T. M.; Tarlov, M. J.; Satija, S. K. J. Am. Chem. Soc. 1998, 120, 9787
63. Krishnan, Y.; Simmel, F. C. Angew. Chem., Int. Ed. 2011, 50, 3124
64. Poghossian, A.; Cherstvy, A.; Ingebrandt, S.; Offenhäusser, A.; Schöning, M. J. Sens. Actuators, B. 2005, 111, 470
65. Gebala, M.; Schuhmann, W. ChemPhysChem. 2010, 11, 2887
66. Husale, S.; Persson, H. H. J.; Sahin, O. Nature 2009, 462, 1075
67. Kim, W.; Ng, J. K.; Kunitake, M. E.; Conklin, B. R.; Yang, P. J. Am. Chem. Soc. 2007, 129, 7228
68. Yang, P. MRS Bull. 2005, 30, 85
69. Tian, R.; Regonda, S.; Gao, J.; Liu, Y.; Hu, W. Lab Chip 2011, 11, 1952
70. Stern, E.; Steenblock, E. R.; Reed, M. A.; Fahmy, T. M. Nano Lett. 2008, 8, 3310
71. Stern, E.; Wagner, R.; Sigworth, F. J.; Breaker, R.; Fahmy, T. M.; Reed, M. A. Nano Lett. 2007, 7, 3405
72. Patolsky, F.; Zheng, G.; Hayden, O.; Lakadamyali, M.; Zhuang, X.; Lieber, C. M. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 14017
73. Elibol, O. H.; Morisette, D.; Akin, D.; Denton, J. P.; Bashir, R. App. Phys. Lett. 2003, 83, 4613
74. Stern, E.; Klemic, J. F.; Routenberg, D. A.; Wyrembak, P. N.; Turner-Evans, D. B.; Hamilton, A. D.; LaVan, D. A.; Fahmy, T. M.; Reed, M. A. Nature 2007, 445, 519
75. Engel, Y.; Elnathan, R.; Pevzner, A.; Davidi, G.; Flaxer, E.; Patolsky, F. Angew. Chem., Int. Ed. 2010, 122, 6835
76. Stern, E.; Vacic, A.; Reed, M. A. IEEE Trans. Electron Devices 2008, 55, 3119
77. Zheng, G.; Patolsky, F.; Cui, Y.; Wang, W. U.; Lieber, C. M. Nat. Biotechnol. 2005, 23, 1294
78. Timko, B. P.; Cohen-Karni, T.; Yu, G.; Qing, Q.; Tian, B.; Lieber, C. M. Nano Lett. 2009, 9, 914
79. Wang, W. U.; Chen, C.; Lin, K.-h.; Fang, Y.; Lieber, C. M. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 3208
80. Patolsky, F.; Zheng, G.; Lieber, C. M. Nat. Protocols 2006, 1, 1711
81. Ishikawa, F. N.; Curreli, M.; Chang, H.-K.; Chen, P.-C.; Zhang, R.; Cote, R. J.; Thompson, M. E.; Zhou, C. ACS Nano 2009, 3, 3969