메뉴 건너뛰기




Volumn 214, Issue , 2012, Pages 103-110

FLAMEnGO: A fuzzy logic approach for methyl group assignment using NOESY and paramagnetic relaxation enhancement data

Author keywords

Automated assignment; Fuzzy logic; Methyl group assignments; Methyl TROSY; Monte Carlo; Sparse NMR data

Indexed keywords

AUTOMATED ASSIGNMENT; METHYL GROUP ASSIGNMENTS; METHYL-TROSY; MONTE CARLO; SPARSE NMR DATA;

EID: 84855677622     PISSN: 10907807     EISSN: 10960856     Source Type: Journal    
DOI: 10.1016/j.jmr.2011.10.008     Document Type: Article
Times cited : (21)

References (19)
  • 2
    • 33846928691 scopus 로고    scopus 로고
    • Quantitative dynamics and binding studies of the 20S proteasome by NMR
    • DOI 10.1038/nature05512, PII NATURE05512
    • R. Sprangers, and L.E. Kay Quantitative dynamics and binding studies of the 20S proteasome by NMR Nature 445 2007 618 622 (Pubitemid 46232877)
    • (2007) Nature , vol.445 , Issue.7128 , pp. 618-622
    • Sprangers, R.1    Kay, L.E.2
  • 3
    • 0038634921 scopus 로고    scopus 로고
    • Side chain assignments of IIe δ1 methyl groups in high molecular weight proteins: An application to a 46 ns tumbling molecule
    • DOI 10.1021/ja021452+
    • V. Tugarinov, and L.E. Kay Side chain assignments of Ile delta 1 methyl groups in high molecular weight proteins: an application to a 46 ns tumbling molecule J. Am. Chem. Soc. 125 2003 5701 5706 (Pubitemid 36592893)
    • (2003) Journal of the American Chemical Society , vol.125 , Issue.19 , pp. 5701-5706
    • Tugarinov, V.1    Kay, L.E.2
  • 4
    • 0242407224 scopus 로고    scopus 로고
    • Ile, Leu, and Val Methyl Assignments of the 723-Residue Malate Synthase G Using a New Labeling Strategy and Novel NMR Methods
    • DOI 10.1021/ja030345s
    • V. Tugarinov, and L.E. Kay Ile, Leu, and Val methyl assignments of the 723-residue malate synthase G using a new labeling strategy and novel NMR methods J. Am. Chem. Soc. 125 2003 13868 13878 (Pubitemid 37386061)
    • (2003) Journal of the American Chemical Society , vol.125 , Issue.45 , pp. 13868-13878
    • Tugarinov, V.1    Kay, L.E.2
  • 5
    • 62049086246 scopus 로고    scopus 로고
    • Application of methyl-TROSY NMR to test allosteric models describing effects of nucleotide binding to aspartate transcarbamoylase
    • A. Velyvis, H.K. Schachman, and L.E. Kay Application of methyl-TROSY NMR to test allosteric models describing effects of nucleotide binding to aspartate transcarbamoylase J. Mol. Biol. 387 2009 540 547
    • (2009) J. Mol. Biol. , vol.387 , pp. 540-547
    • Velyvis, A.1    Schachman, H.K.2    Kay, L.E.3
  • 6
    • 36049046667 scopus 로고    scopus 로고
    • Structural Basis for Signal-Sequence Recognition by the Translocase Motor SecA as Determined by NMR
    • DOI 10.1016/j.cell.2007.09.039, PII S009286740701269X
    • I. Gelis, A.M. Bonvin, D. Keramisanou, M. Koukaki, G. Gouridis, S. Karamanou, A. Economou, and C.G. Kalodimos Structural basis for signal-sequence recognition by the translocase motor SecA as determined by NMR Cell 131 2007 756 769 (Pubitemid 350087200)
    • (2007) Cell , vol.131 , Issue.4 , pp. 756-769
    • Gelis, I.1    Bonvin, A.M.J.J.2    Keramisanou, D.3    Koukaki, M.4    Gouridis, G.5    Karamanou, S.6    Economou, A.7    Kalodimos, C.G.8
  • 7
    • 79961085477 scopus 로고    scopus 로고
    • From the cover: Architecture of the high mobility group nucleosomal protein 2-nucleosome complex as revealed by methyl-based NMR
    • H. Kato, H. van Ingen, B.R. Zhou, H. Feng, M. Bustin, L.E. Kay, and Y. Bai From the cover: architecture of the high mobility group nucleosomal protein 2-nucleosome complex as revealed by methyl-based NMR Proc. Natl. Acad. Sci. USA 108 2011 12283 12288
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 12283-12288
    • Kato, H.1    Van Ingen, H.2    Zhou, B.R.3    Feng, H.4    Bustin, M.5    Kay, L.E.6    Bai, Y.7
  • 9
    • 0032498339 scopus 로고    scopus 로고
    • An introduction to fuzzy systems
    • D. Dubois, and H. Prade An introduction to fuzzy systems Clin. Chim. Acta 270 1998 1 29
    • (1998) Clin. Chim. Acta , vol.270 , pp. 1-29
    • Dubois, D.1    Prade, H.2
  • 12
    • 80051673221 scopus 로고    scopus 로고
    • SHIFTX2: Significantly improved protein chemical shift prediction
    • B. Han, Y. Liu, S.W. Ginzinger, and D.S. Wishart SHIFTX2: significantly improved protein chemical shift prediction J. Biomol. NMR 50 2011 43 57
    • (2011) J. Biomol. NMR , vol.50 , pp. 43-57
    • Han, B.1    Liu, Y.2    Ginzinger, S.W.3    Wishart, D.S.4
  • 13
    • 77950497745 scopus 로고    scopus 로고
    • Dynamic regulation of archaeal proteasome gate opening as studied by TROSY NMR
    • T.L. Religa, R. Sprangers, and L.E. Kay Dynamic regulation of archaeal proteasome gate opening as studied by TROSY NMR Science 328 2010 98 102
    • (2010) Science , vol.328 , pp. 98-102
    • Religa, T.L.1    Sprangers, R.2    Kay, L.E.3
  • 15
    • 0035913884 scopus 로고    scopus 로고
    • Labelling approaches for protein structural studies by solution-state and solid-state NMR
    • L.Y. Lian, and D.A. Middleton Labelling approaches for protein structural studies by solution-state and solid-state NMR Prog. Nucl. Mag. Reson. Spectrosc. 39 2001 171 267
    • (2001) Prog. Nucl. Mag. Reson. Spectrosc. , vol.39 , pp. 171-267
    • Lian, L.Y.1    Middleton, D.A.2
  • 16
    • 79954429599 scopus 로고    scopus 로고
    • A simple biosynthetic method for stereospecific resonance assignment of prochiral methyl groups in proteins
    • M.J. Plevin, O. Hamelin, J. Boisbouvier, and P. Gans A simple biosynthetic method for stereospecific resonance assignment of prochiral methyl groups in proteins J. Biomol. NMR 49 2011 61 67
    • (2011) J. Biomol. NMR , vol.49 , pp. 61-67
    • Plevin, M.J.1    Hamelin, O.2    Boisbouvier, J.3    Gans, P.4
  • 17
    • 34249023900 scopus 로고    scopus 로고
    • 13C-methyl-group-labeled methionine precursor as a useful tool for simplifying protein structural analysis by NMR spectroscopy
    • DOI 10.1002/cbic.200600551
    • M. Fischer, K. Kloiber, J. Hausler, K. Ledolter, R. Konrat, and W. Schmid Synthesis of a 13C-methyl-group-labeled methionine precursor as a useful tool for simplifying protein structural analysis by NMR spectroscopy Chembiochem 8 2007 610 612 (Pubitemid 47194850)
    • (2007) ChemBioChem , vol.8 , Issue.6 , pp. 610-612
    • Fischer, M.1    Kloiber, K.2    Hausler, J.3    Ledolter, K.4    Konrat, R.5    Schmid, W.6
  • 18
    • 58149463865 scopus 로고    scopus 로고
    • An efficient protocol for the complete incorporation of methyl-protonated alanine in perdeuterated protein
    • I. Ayala, R. Sounier, N. Use, P. Gans, and J. Boisbouvier An efficient protocol for the complete incorporation of methyl-protonated alanine in perdeuterated protein J. Biomol. NMR 43 2009 111 119
    • (2009) J. Biomol. NMR , vol.43 , pp. 111-119
    • Ayala, I.1    Sounier, R.2    Use, N.3    Gans, P.4    Boisbouvier, J.5
  • 19
    • 77649179384 scopus 로고    scopus 로고
    • Methyl groups as probes of supra-molecular structure, dynamics and function
    • A.M. Ruschak, and L.E. Kay Methyl groups as probes of supra-molecular structure, dynamics and function J. Biomol. NMR 46 2010 75 87
    • (2010) J. Biomol. NMR , vol.46 , pp. 75-87
    • Ruschak, A.M.1    Kay, L.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.