New insights into the phylogeny and taxonomy of Chinese species of Gagea (Liliaceae)-speciation through hybridization

Organisms Diversity and Evolution

Volumn 11, Issue 5, 2011, Pages 387-407

  Peterson, Angela ^a   Levichev, Igor G ^b   Peterson, Jens ^c   Harpke, Doerte ^d   Schnittler, Martin ^e  

^a MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

^b KOMAROV BOTANICAL INSTITUTE   (Russian Federation)

^c State Office for Environmental Protection of Saxony Anhalt   (Germany)

^d LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^e UNIVERSITY OF GREIFSWALD   (Germany)

Author keywords

CpDNA; Gagea; Hybridization; ITS; Liliales; PCOS At103; Speciation

Indexed keywords

GENE FLOW; HYBRIDIZATION; MONOCOTYLEDON; PHYLOGENETICS; PHYLOGENY; SPECIATION (BIOLOGY); TAXONOMY;

CHINA; XINJIANG UYGUR;

GAGEA; GAGEA CAPUSII; LILIACEAE; LILIALES;

EID: 84855675839     PISSN: 14396092     EISSN: 16181077     Source Type: Journal    
DOI: 10.1007/s13127-011-0059-x     Document Type: Article

References (71)

1. Ajani, Y., Noroozi, J., & Levichev, I. G. (2010). Gagea alexii (Liliaceae), a new record from subnival zone of southern Iran with key and notes on sect. Incrustatae. Pakistan Journal of Botany, 42 Special Issue SI, 67-77.
2. Ali, S. I. (2006). Two new species of Gagea Salisb. (Liliaceae) from Pakistan. Pakistan J Botany, 38, 43-46. (Pubitemid 44888677)
3. Ali, S. I., & Levichev, I. G. (2007). Gagea. In Ali, S. I., & Qaiser, M. (Eds.) Flora of Pakistan No. 215 Liliaceae. (pp. 17-82). Department of Botany, University of Karachi & Missouri Botanical Press.
4. Álvarez, I., & Wendel, J. F. (2003). Ribosomal ITS sequences and plant phylogenetic inference. Molecular Phylogenetic Evolution, 29,417-434. (Pubitemid 37491888)
5. Bayer, E., & López González, G. (1989). Nomenclatural notes on some names in Gagea Salisb. (Liliaceae). Taxon, 38, 643-645.
6. Clement, M., Posada, D., & Crandall, K. A. (2000). TCS: A computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1660.
7. Dasgupta, S., & Deb, D. B. (1986). Taxonomic revision of the genus Gagea Salisb. (Liliaceae) in India and adjoining regions. Journal of the Bombay Natural History Society, 83, 78-97.
8. Duarte, J. M., Wall, P. K., Edger, P. P., Landherr, L. L., Ma, H., Pires, J. C., et al. (2010). Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels. BMC Evolutionary Biology, 10, 61.
9. Gurushidze, M., Fritsch, R. M., & Blattner, F. R. (2008). Phylogenetic analysis of Allium subgenus Melanocrommyum infers cryptic species and demands a new sectional classification. Molecular Phylogenetics and Evolution, 49, 997-1007.
10. Gutermann, W. (2009). Notulae nomenclaturales 29-40. Phyton Horn, Austria, 49, 77-92.
11. Hall, T. A. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
12. Hamazoglu, E., Budak, Ü., & Aksoy, A. (2008). A new species of Gagea Salisb. (Liliaceae) from Sivas (Central Anatolia, Turkey). Turkish Journal of Botany, 32, 261-264.
13. Harpke, D., & Peterson, A. (2008a). 5.8S motifs for the identification of pseudogenic ITS regions. Botany, 86, 300-305. (Pubitemid 351573638)
14. Harpke, D., & Peterson, A. (2008b). Extensive 5.8S nrDNA polymorphism in Mammillaria (Cactaceae) with special reference to the identification of pseudogenic ITS regions. Journal of Plant Research, 121, 261-270.
15. Henker, H. (2005). Goldsterne und Stinsenpflanzen in Mecklenburg- Vorpommern. Botanische Rundbrief Mecklenburg-Vorpommern, 39, 3-108.
16. Huelsenbeck, J. P., & Ronquist, F. (2001). MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755. (Pubitemid 32851390)
17. Huelsenbeck, J. P., Ronquist, F., Nielsen, R., & Bollback, J. P. (2002). Bayesian inference of phylogeny and its impact on evolutionary biology. Science, 294, 2310-2314.
18. Huson, D. H., & Bryant, D. (2006). Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution, 23, 254-267. (Pubitemid 43100040)
19. Jakob, S. S., & Blattner, F. R. (2006). A chloroplast genealogy of Hordeum (Poaceae): Long-term persisting haplotypes, incomplete lineage sorting, regional extinction, and the consequences for phylogenetic inference. Molecular Biology and Evolution, 23, 1602-1612. (Pubitemid 44297418)
20. Levichev, I. G. (1990). Quid est Gagea pseudoerubescens Pasch. (Liliaceae)? Novitates systematicae plantarum vascularium (Leningrad), 27, 22-25. [In Russian]
21. Levichev, I. G. (1999a). Phytogeographical analysis of the genus Gagea Salisb. (Liliaceae). Komarovia St Petersburg, 1, 47-59 [In Russian].
22. Levichev, I. G. (1999b). Zur Morphologie in der Gattung Gagea Salisb. (Liliaceae). I. Die unterirdischen Organe. Flora, 194, 379-392.
23. Levichev, I. G. (2001). New species of the genus Gagea Salisb. (Liliaceae) from western regions of Asia. Turczaninowia, 4, 5-35.
24. Levichev, I. G. (2006a). A review of the Gagea (Liliaceae) species in the flora of Caucasus. Bot Zhurn (Leningrad), 91, 917-951 [In Russian].
25. Levichev, I. G. (2006b). Four new species of the genus Gagea Salisb. (Liliaceae) from Western Himalayas and the adjoining regions. Pakistan Journal of Botany, 38, 47-54. (Pubitemid 44884530)
26. Levichev, I. G. (2008). New species of genus Gagea Salisb (Liliaceae) from the Crimean Yaila. Novitates systematicae plantarum vascularium St Petersburg, 40, 39-46 [In Russian].
27. Levichev, I. G., & Ali, S. I. (2006). Seven new species of the genus Gagea Salisb. (Liliaceae) from Western Himalayas and adjoining regions. Pakistan Journal of Botany, 38, 55-62. (Pubitemid 44884531)
28. Levichev, I. G., & Jezniakowsky, S. A. (2008). Historia Gagearum. [http://www.binran.ru/infsys/gagea/index-eng.html, accessed 20. July 2010].
29. Levichev, I. G., & Maassoumi, S. M. (2005). Comparison of sporoderm features of Gagea lutea and G nakaiana (Liliaceae). Bot Zhurn (Leningrad), 90, 874-878 [In Russian].
30. Li, M., Wunder, J., Bissoli, G., Scarponi, E., Gazzani, S., Barbaro, E., et al. (2008). Development of COS genes as universally amplifiable markers for phylogenetic reconstructions of closely related plant species. Cladistics, 24, 1-19.
31. Librado, P., & Rozas, J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452.
32. Linder, C. R., & Rieseberg, L. H. (2004). Reconstructing patterns of reticulate evolution in plants. American Journal of Botany, 91, 1700-1708. (Pubitemid 43193727)
33. Nylander, J. A. A. (2004). MrModeltest v2. Program distributed by the author. Uppsala: Evolutionary Biology Centre, Uppsala Univ.
34. Pascher, A. A. (1904). Übersicht über die Arten der Gattung Gagea. Sitzungsberichte desDeutschen Naturwissenschaftlich-Medizinischen Vereins für Böhmen. Lotos (NF), 24, 109-131.
35. Pascher, A. A. (1905). Neue Arten und Varietäten der Gattung Gagea. Fedd Repert, 1, 190-196.
36. Pascher, A. A. (1907). Conspectus Gagearum Asiae. Bulletin de la Societe Imperiale des Naturalistes de Moscou, 19, 353-375.
37. Peruzzi, L. (2003). Contribution to the cytotaxonomical knowledge of Gagea Salisb (Liliaceae) sect. Foliatae A. Terracc. and synthesis of karyological data. Caryologia, 56, 115-128. (Pubitemid 37164234)
38. Peruzzi, L. (2008a). Hybridity as a main evolutionary force in the genus Gagea Salisb (Liliaceae). Plant Biosystems, 142, 179-184. (Pubitemid 351367073)
39. Peruzzi, L. (2008b). Contribution to the cytotaxonomical knowledge of the genus Gagea Salisb. (Liliaceae). III. New karyological data from the central Mediterranean area. Caryologia, 61, 92-106.
40. Peruzzi, L., Bartolucci, F., Frignani, F., & Minutillo, F. (2007). Gagea tisoniana, a new species of Gagea Salisb sect Gagea (Liliaceae) from Central Italy. Botanical Journal of the Linnean Society, 155, 337-347. (Pubitemid 350059079)
41. Peruzzi, L., Tison, J.-M., Peterson, A., & Peterson, J. (2008a). On the phylogenetic position and taxonomic value of Gagea trinervia (Viv.) Greuter and Gagea sect. Anthericoides A. Terracc. (Liliaceae). Taxon, 57, 1201-1214.
42. Peruzzi, L., Peterson, A., Tison, J.-M., & Peterson, J. (2008b). Phylogenetic relationships of Gagea Salisb (Liliaceae) in Italy, inferred from molecular and morphological data matrices. Plant Systematics and Evolution, 276, 219-234.
43. Peruzzi, L., Peterson, A., Tison, J.-M.,&Harpke,D. (2011). Newlight on phylogeny and taxonomy of the Eurasian Gagea villosa-G. fragifera complex (Liliaceae). Nordic Journal of Botany, in press.
44. Peterson, A., John, H., Koch, E., & Peterson, J. (2004). A molecular phylogeny of the genus Gagea (Liliaceae) in Germany inferred from non-coding chloroplast and nuclear DNA sequences. Plant Systematics and Evolution, 245, 145-162. (Pubitemid 38630109)
45. Peterson, A., Levichev, I. G., & Peterson, J. (2008). Systematics of Gagea and Lloydia (Liliaceae) and infrageneric classification of Gagea based on molecular and morphological data. Molecular Phylogenetics and Evolution, 46, 446-465.
46. Peterson, A., Harpke, D., Peruzzi, L., Levichev, I. G., Tison, J.-M., & Peterson, J. (2009). Hybridization drives speciation in Gagea (Liliaceae). Plant Systematics and Evolution, 278, 133-148.
47. Peterson, A., Harpke, D., Peruzzi, L., Tison, J.-M., John, H., & Peterson, J. (2010). Gagea bohemica (Liliaceae), a highly variable monotypic species within sect. Didymobulbos. Plant Biosystems, 144, 308-322. Pfeiffer, T., Klahr, A., Heinrich, A., & Schnittler, M. (2011). Does sex make a difference? Genotypic diversity and spatial genetic structure in two co-occurring Gagea species with contrasting reproductive strategies (G lutea, G. spathacea, Liliaceae). Plant Systematics and Evolution, 281, 189-201.
48. Posada, D., & Crandall, K. A. (1998). Modeltest, testing the model of DNA substitution. Bioinformatics, 14, 817-818. (Pubitemid 28552116)
49. Sang, T., Crawford, D. J., & Stuessy, T. F. (1997). Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). American Journal of Botany, 84, 1120-1136. (Pubitemid 28106981)
50. Schnittler, M., Pfeiffer, T., Harter, D., & Hamann, A. (2009). Bulbils contra seeds: Reproductive investment in two species of Gagea (Liliaceae). Plant Systematics and Evolution, 279, 29-40.
51. Shue, L. Z. (1980). Gagea nigra L. Z. Shue. Fl Reipubl Popularis Sin, 14, 282.
52. Terracciano A. (1905-1906). Gagearum speciesflorae orientalis ad exemplaria imprimis in herbariis Boissier et Barbey servata. Bull Herb Boissier T. 5(11). P. 1061-1076; T. 5(12). P. 1113-1128; T. 6(2). P. 105-120.
53. Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994). Clustal-W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673-4680. (Pubitemid 24354800)
54. Tison, J.-M. (2001). Typification de Gagea cossoniana Pascher, de Gagea fragifera (Vill.) Ehr. Bayer & G. López et de Gagea maroccana (A. Terracc.) Sennen & Mauricio. Candollea, 56, 197-202.
55. Tison, J.-M. (2004). Gagea polidorii J. -M. Tison, espèce méconnue du sud-ouest des Alpes et des Apennins. Acta Bot Gallica, 151, 319-326. (Pubitemid 39568260)
56. Tison, J.-M. (2009). Update of the genus Gagea Salisb. (Liliaceae). Lagascalia, 29, 7-22.
57. Vvedensky, A. I. (1971). Determination handbook of the plants of Central Asia, vol 2. Tashkent. [In Russian]
58. White, T. J., Bruns, T., Lee, S., & Taylor, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In M. A. Innis, D. H. Gelfand, J. J. Sninsky, & T. J. White (Eds.), PCR Protocols: A Guide to Methods and Applications (pp. 315-322). San Diego: Academic.
59. Woolley, S. M., Posada, D., & Crandall, K. A. (2008). A comparison of phylogenetic network methods using computer simulation. PloS One, 3, e1913. doi:10.1371/journal.pone.0001913. (Pubitemid 352024748)
60. Xinqi, C., & Turland, N. J. (2000). Flora of China 24, 117-121. [http://flora.huh.harvard.edu/china/PDF/PDF24/gagea.pdf, accessed 20. February 2010].
61. Zarrei, M., Zarre, S., Wilkin, P., & Rix, M. (2007). Systematics revision of the genus Gagea (Liliaceae) in Iran. Botanical Journal of the Linnean Society, 154, 559-588. (Pubitemid 47317637)
62. Zarrei, M., Wilkin, P., Fay, M. F., Ingrouille, M. J., Zarre, S., & Chase, M. W. (2009). Molecular systematics of Gagea and Lloydia (Liliaceae; Liliales): Implications of analyses of nuclear ribosomal and plastid DNA sequences for infrageneric classification. Annals of Botany, 104, 125-142.
63. Zarrei, M., Wilkin, P., Ingrouille, M. J., & Chase, M. W. (2010a). Gagea calcicola (Liliaceae), a new species from southwestern Iran. Kew Bulletin, 65, 89-96.
64. Zarrei, M., Wilkin, P., Ingrouille, M. J., & Chase, M. W. (2010b). Gagea robusta (Liliaceae), a new species from Flora Iranica area. Kew Bulletin, 65, 327-336.
65. Zarrei, M., Wilkin, P., Ingrouille, M. J., Leitch, I., Buerki, S., Fay, M. F., & Chase, M. W. (2010d). Species relationships in the Gagea reticulata species complex utilizing nucleotide sequences of the low-copy nuclear gene malate synthase and flow cytometry data. Poster in SPNHC & CBA-ABC Joint Conference, p. 102, Ottawa, Canada.
66. Zarrei, M., Wilkin, P., Ingrouille, M. J., Zarre, S., & Chase, M. W. (2010c). The systematic importance of anatomical data in Gagea (Liliaceae) from the Flora Iranica area. Botanical Journal of the Linnean Society, 164, 155-177.
67. Zarrei,M.,Wilkin, P., & Chase,M.W. (2011b). Gagea Salisb (Liliaceae) in Iran: An updated species checklist. Phytotaxa, 15, 3-43.
68. Zarrei, M., Wilkin, P., Ingrouille, M. J., & Chase, M. W. (2011a). A revised infrageneric classification for Gagea (Tulipeae; Liliaceae): Insights from DNA sequence and morphological data. Phytotaxa, 15, 44-56.
69. Zhao, L.-Q., & Yang, J. (2006). Gagea daqingshanensis (Liliaceae), a new species from Inner Mongolia, China. Annales Botanici Fennici, 43, 223-224. (Pubitemid 44077513)
70. Zhao,Y.-Z.,&Zhao, L.-Q. (2003).Anew species of Gagea (Liliaceae) from Nei Mongol, China. Acta Phytotaxonomica Sinica, 41, 393-394.
71. Zhao, Y.-Z., & Zhao, L.-Q. (2004). Gagea chinensis (Liliaceae), a new species from Inner Mongolia, China. Annales Botanici Fennici, 41, 297-298. (Pubitemid 39234868)