Calculation of diagnostic parameters of advanced serological and molecular tissue-print methods for detection of Citrus tristeza virus: A model for other plant pathogens

Phytopathology

Volumn 102, Issue 1, 2012, Pages 114-121

  Vidal, E ^a   Yokomi, R K ^b   Moreno, A ^c   Bertolini, E ^a   Cambra, M ^a  

^a INSTITUTO VALENCIANO DE INVESTIGACIONES AGRARIAS IVIA   (Spain)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

^c INSTITUTO DE CIENCIAS AGRARIAS   (Spain)

Author keywords

Bayes' theorem; Direct tissue blot immunoassay

Indexed keywords

CITRUS; CITRUS MACROPHYLLA; CITRUS TRISTEZA VIRUS;

EID: 84855480059     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-05-11-0139     Document Type: Article

References (47)

1. Altman, D. G., and Bland, J. M. 1994. Diagnostic tests 1: Sensitivity and specificity. BMJ 308:1552. (Pubitemid 24178459)
2. Bar-Joseph, M., Loebenstein, G., and Oren, Y. 1974. Use of Electron Microscopy in eradication of tristeza sources recently found in Israel. Pages 83-85 in: Proc. 6th Conf. Int. Organ. Citrus Virol. L. G. Weathers and M. Cohen, eds. IOCV, Riverside, CA.
3. Bertolini, E., Moreno, A., Capote, N., Olmos, A., de Luis, A., Vidal, E., Pérez-Panadés, J., and Cambra, M. 2008. Quantitative detection of Citrus tristeza virus in plant tissues and single aphids by real-time RT-PCR. Eur. J. Plant Pathol. 120:177-188.
4. Bianchi, M. T., and Alexander, B. M. 2006. Evidence based diagnosis: Does the language reflect the theory? BMJ 333:442-445. (Pubitemid 44320132)
5. Bruening, G. 2006. Resistance to infection. Pages 211-240 in: Natural Resistance Mechanisms of Plants to Viruses. G. Loebenstein and J. P. Carr, eds. Springer, Dordrecht, The Netherlands.
6. Byrt, T., Bishop, J., and Carlin, J. B. 1993. Bias, prevalence and kappa. J. Clin. Epidemiol. 46:423-429. (Pubitemid 23194263)
7. Cambra, M., Camarasa, E., Gorris, M. T., Garnsey, S. M., Gumpf, D. J., and Tsai, M. C. 1993. Epitope diversity of citrus tristeza virus (CTV) isolates in Spain. Pages 33-38 in: Proc. 12th Conf. Int. Organ. Citrus Virol. P. Moreno, J. V. Da Graça, and L. W. Timmer, eds. IOCV, Riverside, CA.
8. Cambra, M., Garnsey, S. M., Permar, T. A., Henderson, C. T., Gumpf, D., and Vela, C. 1990. Detection of Citrus tristeza virus (CTV) with a mixture of monoclonal antibodies. (Abstr.) Phytopathology 80:1034.
9. Cambra, M., Gorris, M. T., Marroquín, C., Román, M. P., Olmos, A., Martínez, M. C., Hermoso de Mendoza, A., López, A., and Navarro, L. 2000. Incidence and epidemiology of Citrus tristeza virus in the Valencia Community of Spain. Virus Res. 71:85-95. (Pubitemid 32008546)
10. Cambra, M., Gorris, M. T., Olmos, A., Martínez, M. C., Román, M. P., Bertolini, E., López A., and Carbonell E. A. 2002. European Diagnostic Protocols (DIAGPRO) for Citrus tristeza virus in adult trees. Pages 69-77 in: Proc. 15th Conf. Int. Organ. Citrus Virol. N. Durán-Vila, R. G. Milne, and J. V. da Graça, eds. IOCV, Riverside, CA.
11. Cambra, M., Gorris, M. T., Román, M. P., Terrada, E., Garnsey, S. M., Camarasa, E., Olmos, A., and Colomer, M. 2000. Routine detection of Citrus tristeza virus by direct Immunoprinting-ELISA method using specific monoclonal and recombinant antibodies. Pages 34-41 in: Proc. 14th Conf. Int. Organ. Citrus Virol. J. V. da Graça, R. F. Lee, and R. K. Yokomi, eds. IOCV, Riverside, CA.
12. Capote, N., Bertolini, E., Olmos, A., Vidal, E., Martínez, M. C., and Cambra, M. 2009. Direct simple preparation methods for the detection of Plum pox virus by real-time RT-PCR. Int. Microbiol. 12:1-6.
13. Cohen, J. 1960. A coefficient of agreement for nominal scales. Educ. Psychol. Meas. 20:37-46.
14. Davies, F., and Albrigo, L. G. 1994. Citrus. Crop Production Science in Horticulture Series, Volume 2. CAB International, Wallingford, UK.
15. Deeks, J. J., and Altman, D. G. 2004. Diagnostic tests 4: Likelihood ratios. BMJ 329:168-169.
16. EPPO. 2004. Diagnostic protocol for regulated pests. Citrus tristeza virus. Bull. OEPP/EPPO Bull. 34:239-246.
17. Feinstein, A. R., and Cicchetti, D. V. 1990. High agreement but low kappa: I. The problems with two paradoxes. J. Clin. Epidemiol. 43:543-549. (Pubitemid 20178543)
18. Garnsey, S. M., and Cambra, M. 1991. Enzyme-linked immunosorbent assay (ELISA) for citrus pathogens. Pages 193-216 in: Graft-Transmissible Diseases of Citrus. Handbook for Detection and Diagnosis. C. N. Roistacher, ed. FAO, Rome.
19. Garnsey, S. M., Permar, T. A., Cambra, M., and Henderson, C. T. 1993. Direct tissue blot immunoassay (DTBIA) for detection of Citrus tristeza virus (CTV). Pages 39-50 in: Proc. 12th Conf. Int. Organ. Citrus Virol. P. Moreno, J. V. da Graça, and L. W Timmer, eds. IOCV, Riverside, CA.
20. Jaeschke, R., Guyatt, G., and Lijmer, J. 2002. Diagnostic tests. Pages 121-140 in: Users' Guides to the Medical Literature. G. Guyatt and D. Rennie, eds. AMA Press, Chicago.
21. Karasev, A. V., Boyko, V. P., Gowda, S., Nikolaeva, O. V., Hilf, M. E., Koonin, E. V., Niblett, C. L. Cline, K., Gumpf, D. J., Lee, R. F., Garnsey, S. M., Lewandowski, D. J., and Dawson, W. O. 1995. Complete sequence of the citrus tristeza virus RNA genome. Virology 208:511-520.
22. Landis, J. R., and Koch, G. G. 1977. The measurement of observer agreement for categorical data. Biometrics 33:159-174. (Pubitemid 8054849)
23. López, M. M., Llop, P., Olmos, A., Marco-Noales, E., Cambra, M., and Bertolini, E. 2009. Are molecular tools solving the challenges posed by detection of plant pathogenic bacteria and viruses? Curr. Issues Mol. Biol. 11:13-46.
24. McNemar, Q. 1947. Note on the sampling error of the difference between correlated proportions or percentages. Psychometrika 12:153-157.
25. Moreno, P., Ambrós, S., Martí-Albiach, M. R., Guerri, J., and Peña, L. 2008. Citrus tristeza virus: A pathogen that changed the course of the citrus industry. Mol. Plant Pathol. 9:251-268. (Pubitemid 351280999)
26. Neves, D. D., Dias, R. M., da Cunha, A. J., and Preza, P. C. 2004. What is the probability of a patient presenting a pleural effusion due to tuberculosis? Braz. J. Infect. Dis. 8:311-318.
27. Newcombe, R. G. 1998. Two-sided confident intervals for the single proportions: Comparison of seven methods. Stat. Med. 17:857-872. (Pubitemid 28185165)
28. Nikolaeva, O. V., Karasev, A. V., Powell, C. A., Gumpf, D. J., Garnsey, S. M., and Lee, R. F. 1996. Mapping of epitopes for Citrus tristeza virusspecific monoclonal antibodies using bacterially expressed coat protein fragments. Phytopathology 86:974-979. (Pubitemid 26350781)
29. Nolasco, G., de Blas, C., Torres, V., and Ponz, F. 1993. A method combining immunocapture and PCR amplification in a microtiter plate for the routine diagnosis of plant viruses and subviral pathogens. J. Virol. Methods 45:201-218. (Pubitemid 23356054)
30. Olmos, A., Bertolini, E., Capote, N., and Cambra, M. 2008. An evidencebased approach to Plum Pox Virus detection by DASI-ELISA and RT-PCR in dormant period. Virol. Res. Treat. 1:1-8.
31. Olmos, A., Cambra, M., Esteban, O., Gorris, M. T., and Terrada, E. 1999. New device and method for capture, reverse transcription and nested PCR in a single closed tube. Nucleic Acids Res. 27:1564-1565. (Pubitemid 29206304)
32. Olmos A., Capote N., Bertolini E., and Cambra M. 2007. Molecular diagnostic methods for plant viruses. Pages 227-249 in: Biotechnology and Plant Disease Management. Z. K. Punja, S. De Boer, and H. I. Sanfaçon, eds. CABI Publishing, Wallingford, UK.
33. Olmos, A., Dasí, M. A., Candresse, T., and Cambra, M., 1996. Print capture PCR: A simple and highly sensitive method for the detection of plum pox virus (PPV) in plant tissues. Nucleic Acids Res. 24:2192-2193. (Pubitemid 26174565)
34. Permar, T. A., Garnsey, S. M., Gumpf, D. J., and Lee, R. F. 1990. A monoclonal antibody which discriminates strains of Citrus tristeza virus. Phytopathology 80:224-228.
35. Roistacher, C. N. 1991. Graft-Transmissible Diseases of Citrus. Handbook for Detection and Diagnosis. FAO, Rome.
36. Román, M. P., Cambra, M., Juárez, J., Moreno, P., Duran-Vila, N., Tanaka, F. A. O., Alves, E., Kitajima, E. W., Yamamoto, P. T., Bassanezi, R. B., Teixeira, D. C., Junior, W. C. J., Ayres, A. J., Gimenes-Fernandes, N., Rabenstein, F., Girotto, L. F., and Bové, J. M. 2004. Sudden death of citrus in Brazil: A graft-transmissible bud union disease. Plant Dis. 88:453-467. (Pubitemid 38504375)
37. Ruiz-Ruiz, S., Moreno, P., Guerri, J., and Ambrós, S. 2007. A real-time RT-PCR assay for detection and absolute quantitation of Citrus tristeza virus in different plant tissues. J. Virol. Methods 145:96-105. (Pubitemid 47332696)
38. Sackett, D. L., Haynes, R. B., Guyatt, G. H., and Tugwell, P. 1991. Clinical Epidemiology: A Basic Science for Clinical Medicine, 2nd ed. Little Brown, Boston.
39. Saponari, M., Keremane, M. L., and Yokomi, R. K. 2008. Quantitative detection of Citrus tristeza virus (CTV) in citrus and aphids by real-time reverse transcription-PCR (TaqMan). J. Virol. Methods 147:43-53. (Pubitemid 350250847)
40. Simel, D. L., Samsa, G. P., and Matchar, D. B. 1991. Likelihood ratios with confidence: Sample size estimation for diagnostic test studies. J. Clin. Epidemiol. 44:763-770.
41. Terrada, E., Kerschbaumer, R. J., Giunta, G., Galeffi, P., Himmler, G., and Cambra M. 2000. Fully "Recombinant enzyme-linked immunosorbent assays" using genetically engineered single-chain antibody fusion proteins for detection of Citrus tristeza virus. Phytopathology 90:1337-1344.
42. Vela, C., Cambra, M., Cortés, E., Moreno, P., Miguet, J., Pérez de San Román, C., and Sanz, A. 1986. Production and characterization of monoclonal antibodies specific for Citrus tristeza virus and their use for diagnosis. J. Gen. Virol. 67:91-96. (Pubitemid 16177184)
43. Vidal, E., Moreno, A., Bertolini, E., and Cambra, M. 2011. Estimation of the accuracy of two diagnostic methods for the detection of Plum pox virus in nursery blocks by latent class models. Plant Pathol. doi: 10.1111/j.1365-3059. 2011.02505.x.
44. Wilson, E. B. 1927. Probable inference, the law of succession, and statistical inference. J. Am. Stat. Assoc. 22:209-212.
45. Yokomi, R. K., and De Borde, R. L. 2005. Incidence, transmissibility and genotype analysis of Citrus tristeza virus (CTV) isolates from CTV eradicative and noneradicative districts in central California. Plant Dis. 89:859-866. (Pubitemid 41009306)
46. Yokomi, R. K., Lastra, R., Stoetzel, M. B., Damsteegt, V. D., Lee, R. F., Garnsey, S. M., Gottwald, T. R., Rocha-Peña, M. A., and Niblett, C. L. 1994. Establishment of the brown citrus aphid (Homoptera, Aphididae) in Central-America and the Caribbean Basin and transmission of Citrus tristeza virus. J. Econ. Entomol. 87:1078-1085. (Pubitemid 2129751)
47. Zhou, X. H. 1998. Correcting for verification bias in studies of a diagnostic test's accuracy. Stat. Methods Med. Res. 7:337-353.