The genetic ghost of an invasion past: Colonization and extinction revealed by historical hybridization in Senecio

Molecular Ecology

Volumn 21, Issue 2, 2012, Pages 369-387

  Pelser, Pieter B ^a   Abbott, Richard J ^b   Comes, Hans P ^c   Milton, Joseph J ^b   Mãller, Michael ^d   Looseley, Mark E ^e   Cron, Glynis V ^f   Barcelona, Julie F ^a   Kennedy, Aaron H ^g   Watson, Linda E ^h   Barone, Rubén ⁱ   Hernãndez, Fabiãn ^j   Kadereit, Joachim W ^k  

^a UNIVERSITY OF CANTERBURY   (New Zealand)

^b UNIVERSITY OF ST ANDREWS   (United Kingdom)

^c UNIVERSITY OF SALZBURG   (Austria)

^d ROYAL BOTANIC GARDEN EDINBURGH   (United Kingdom)

^e SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

^f UNIVERSITY OF THE WITWATERSRAND   (South Africa)

^g AGRICULTURAL RESEARCH SERVICE   (United States)

^h OKLAHOMA STATE UNIVERSITY   (United States)

ⁱ Museo de Ciencias Naturales   (Spain)

^j Avda Rectora M Luisa Tejedor ^*  (Spain)

^k JOHANNES GUTENBERG UNIVERSITY   (Germany)

more..

Author keywords

Asteraceae; morphometrics; phylogenetic incongruence; recombination; Senecio massaicus; Senecioneae

Indexed keywords

PLANT DNA;

AFRICA; AMINO ACID SEQUENCE; ARTICLE; CLASSIFICATION; DNA SEQUENCE; EVOLUTION; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENETICS; HYBRIDIZATION; INTRODUCED SPECIES; MOLECULAR CLONING; MOLECULAR GENETICS; MOROCCO; PHYLOGENY; PHYLOGEOGRAPHY; SENECIO; SEQUENCE ALIGNMENT; SPAIN; SPECIES EXTINCTION;

AFRICA, SOUTHERN; AMINO ACID SEQUENCE; BIOLOGICAL EVOLUTION; CLONING, MOLECULAR; DNA, PLANT; EXTINCTION, BIOLOGICAL; GENETIC VARIATION; HYBRIDIZATION, GENETIC; INTRODUCED SPECIES; MOLECULAR SEQUENCE DATA; MOROCCO; PHYLOGENY; PHYLOGEOGRAPHY; RECOMBINATION, GENETIC; SENECIO; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SPAIN;

ANIMALIA; ASTERACEAE; SENECIO; SENECIO INAEQUIDENS; SENECIONEAE;

EID: 84855436391     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2011.05399.x     Document Type: Article

References (82)

1. Abbott RJ, (1992) Plant invasions, interspecific hybridization and the evolution of new plant taxa. Trends in Ecology & Evolution, 7, 401-405. (Pubitemid 23401569)
2. Abbott RJ, Brennan AC, James JK, et al. (2009) Recent hybrid origin and invasion in the British Isles by a self-incompatible species, Oxford ragwort (Senecio squalidus L., Asteraceae). Biological Invasions, 11, 1145-1158.
3. Acebes Ginovés JR, Leõn Arencibia MC, Rodríguez Navarro ML, et al. (2010) Pteridophyta, Spermatophyta. In: Lista de Especies Silvestres de Canarias. Hongos, Plantas y Animales Terrestres 2009 (eds, Arechavaleta M, Rodríguez S, Zurita N, García A,), pp. 119-172. Gobierno de Canarias, Santa Cruz, Tenerife.
4. Alexander JCM, (1979) The Mediterranean species of Senecio sections Senecio and Delphinifolius. Notes from the Royal Botanic Garden Edinburgh, 37, 387-428.
5. Alice LA, Eriksson T, Eriksen B, Campbell CS, (2001) Hybridization and gene flow between distantly related species of Rubus (Rosaceae): evidence from nuclear ribosomal DNA internal transcribed spacer region sequences. Systematic Botany, 26, 769-778. (Pubitemid 34021073)
6. Ãlvarez I, Wendel JF, (2003) Ribosomal ITS sequences and plant phylogenetic inference. Molecular Phylogenetics and Evolution, 29, 417-434. (Pubitemid 37491888)
7. Arenas M, Posada D, (2010) The effect of recombination on the reconstruction of ancestral sequences. Genetics, 184, 1133-1139.
8. Arnold ML, (1997) Natural Hybridization and Evolution. Oxford University Press, Oxford.
9. Arnold ML, (2006) Evolution Through Genetic Exchange. Oxford University Press, Oxford.
10. Axelrod DI, Raven PH, (1978) Late Cretaceous and Tertiary vegetation history of Africa. In: Biogeography and Ecology of Southern Africa (ed., Werger MJA,), pp. 77-130. Junk, The Hague.
11. Baack EJ, Rieseberg LH, (2007) A genomic view of introgression and hybrid speciation. Current Opinions in Genetics & Development, 17, 513-518. (Pubitemid 350184308)
12. Barone R, Hernández F, (2010) El barranco de Tajo (Arico), un interesante enclave natural de la comarca sureste de Tenerife. Boletín de la Real Sociedad Econõmica de Amigos del País de Tenerife, 8, 197-236.
13. Boni MF, Posada D, Feldman MW, (2007) An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics, 176, 1035-1047. (Pubitemid 46961105)
14. Brochmann C, (1984) Hybridization and distribution of Argyranthemum coronopifolium (Asteraceae-Anthemideae) in the Canary Islands. Nordic Journal of Botany, 4, 729-736.
15. Buckler ES, Ippolito A, Holtsford TP, (1997) The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications. Genetics, 145, 821-832. (Pubitemid 27108036)
16. Chapman MA, Abbott RJ, (2010) Introgression of fitness genes across a ploidy barrier. New Phytologist, 186, 63-72.
17. Cronn R, Wendel JF, (2004) Cryptic trysts, genomic mergers, and plant speciation. New Phytologist, 161, 133-142. (Pubitemid 38047054)
18. Cronn R, Cedroni M, Haselkorn T, Grover C, Wendel JF, (2002) PCR-mediated recombination in amplification products derived from polyploid cotton. Theoretical and Applied Genetics, 104, 482-489. (Pubitemid 36065078)
19. Dalgaard V, (1986) Chromosome studies in flowering plants from Macaronesia. Anales Jardín Botánico de Madrid, 43, 83-111.
20. Delany S, Scott D, Dodman T, Stroud D, (2009) An Atlas of Wader Populations in Africa and Western Eurasia. Wetlands International, Wageningen.
21. Drummond A, Rambaut A, (2007) BEAST: bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
22. Du Z-Y, Yang C-F, Chen J-M, Guo Y-H, (2009) Nuclear and chloroplast DNA sequences data support the origin of Potamogeton intortusifolius J.B. He in China as a hybrid between P. perfoliatus Linn. and P. wrightii Morong. Aquatic Botany, 91, 47-50.
23. Ellis JR, Bentley KE, McCauley DE, (2008) Detection of rare paternal chloroplast inheritance in controlled crosses of the endangered sunflower Helianthus verticillatus. Heredity, 100, 574-580. (Pubitemid 351733264)
24. Ellstrand NC, Schierenbeck KA, (2006) Hybridization as a stimulus for the evolution of invasiveness in plants? Euphytica, 148, 35-46. (Pubitemid 43825134)
25. Ernst WHO, (1998) Invasion, dispersal and ecology of the South African neophyte Senecio inaequidens in the Netherlands: from wool alien to railway and road alien. Acta Botanica Neerlandica, 47, 131-151. (Pubitemid 28235765)
26. Feliner GN, Larena BG, Aguilar JF, (2004) Fine-scale geographical structure, intra-individual polymorphism and recombination in nuclear ribosomal internal transcribed spacers in Armeria (Plumbaginaceae). Annals of Botany, 93, 189-200.
27. Felsenstein J, (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791.
28. Fenner M, (1985) Seed Ecology. Chapman & Hall, London.
29. Franzke A, Mummenhoff K, (1999) Recent hybrid speciation in Cardamine (Brassicaceae)-conversion of nuclear ribosomal ITS sequences in statu nascendi. Theoretical and Applied Genetics, 98, 831-834. (Pubitemid 29212086)
30. Geyer CJ, (1991) Markov chain Monte Carlo maximum likelihood. In: Computing Science and Statistics: Proceedings of the 23rd Symposium on the Interface (ed., Keramidas EM,), pp. 156-163. Interface Foundation of North America Inc., Fairfax Station, Virginia, USA.
31. Gibbs MJ, Armstrong JS, Gibbs AJ, (2000) Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics, 16, 573-582.
32. Goloboff PA, Farris JS, Nixon KC, (2008) TNT, a free program for phylogenetic analysis. Cladistics, 24, 774-786.
33. Gray AJ, Marshall DF, Raybould AF, (1991) A century of evolution in Spartina anglica. Advances in Ecological Research, 12, 1-62.
34. Gross BL, Rieseberg LH, (2005) The ecological genetics of homoploid hybrid speciation. Journal of Heredity, 96, 241-252. (Pubitemid 40434678)
35. Guindon S, Gascuel O, (2003) A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood. Systematic Biology, 52, 696-704. (Pubitemid 37365050)
36. Haas BJ, Gevers D, Earl AM, et al. (2011) Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Research, 21, 494-504.
37. Heath L, van der Walt E, Varsani A, Martin DP, (2006) Recombination patterns in aphthoviruses mirror those found in other picornaviruses. Journal of Virology, 80, 11827-11832. (Pubitemid 44788894)
38. Holmgren PK, Holmgren NH, Barnett LC, (1990) Index Herbariorum Part I: The Herbaria of the World, 8th edn. New York Botanical Garden, Bronx, New York, USA.
39. Huelsenbeck JP, Ronquist F, (2001) MRBAYES: bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755. (Pubitemid 32851390)
40. Hughes M, Möller M, Bellstedt DU, Edwards TJ, De Villiers M, (2005) Refugia, dispersal and divergence in a forest archipelago: a study of Streptocarpus in eastern South Africa. Molecular Ecology, 14, 4415-4426. (Pubitemid 44943719)
41. Ibn Tattou M, Fennane M, (2008) Flore vasculaire du Maroc inventaire et chlorologie 2: Asteraceae et Monocotyledones. Travaux de l'Institut Scientifique, Série Botanique, 39, 1-398.
42. Irwin JA, Abbott RJ, (1992) Morphometric and isozyme evidence for the hybrid origin of a new tetraploid radiate groundsel in York, England. Heredity, 69, 431-439.
43. Kadereit JW, (1984a) Studies on the biology of Senecio vulgaris L. ssp. denticulatus (O. F. Muell.) P. D. Sell. New Phytologist, 97, 681-689.
44. Kadereit JW, (1984b) The origin of Senecio vulgaris (Asteraceae). Plant Systematics and Evolution, 145, 135-153.
45. Kay K, Whittall J, Hodges S, (2006) A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects. BMC Evolutionary Biology, 6, 36.
46. Kelly LJ, Leitch AR, Clarkson JJ, et al. (2010) Intragenic recombination events and evidence for hybrid speciation in Nicotiana (Solanaceae). Molecular Biology and Evolution, 27, 781-799.
47. Le Roux JJ, Wieczorek AM, Ramadan MM, Tran CT, (2006) Resolving the native provenance of invasive fireweed (Senecio madagascariensis Poir.) in the Hawaiian Islands as inferred from phylogenetic analysis. Diversity and Distributions, 12, 694-702. (Pubitemid 44657194)
48. Le Roux JJ, Wieczorek AM, Tran CT, Vorsino A, (2010) Disentangling the dynamics of invasive fireweed (Senecio madagascariensis Poir. species complex) in the Hawaiian Islands. Biological Invasions, 12, 2251-2264.
49. Lee CE, (2002) Evolutionary genetics of invasive species. Trends in Ecology & Evolution, 17, 386-391. (Pubitemid 34775260)
50. Manen J-F, (2004) Are both sympatric species Ilex perado and Ilex canariensis secretly hybridizing? Indication from nuclear markers collected in Tenerife. BMC Evolutionary Biology, 4, 46.
51. Martin DP, Rybicki E, (2000) RDP: detection of recombination amongst aligned sequences. Bioinformatics, 16, 562-563.
52. Martin DP, Posada D, Crandall KA, Williamson C, (2005) A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Research and Human Retroviruses, 21, 98-102. (Pubitemid 40179806)
53. Maynard Smith J, (1992) Analyzing the mosaic structure of genes. Journal of Molecular Evolution, 34, 126-129.
54. McDade LA, (1992) Hybrids and phylogenetic systematics II. The impact of hybrids on cladistic analysis. Evolution, 46, 1329-1346.
55. Müller P, (1955) Verbreitungsbiologie der Blütenpflanzen. Veröffentlichungen des Geobotanischen Institutes Rübel in Zürich. Hans Huber Verlag, Bern.
56. Otto SP, Whitton J, (2000) Polyploid incidence and evolution. Annual Review of Genetics, 34, 401-437. (Pubitemid 32065927)
57. Padidam M, Sawyer S, Fauquet CM, (1999) Possible emergence of new geminiviruses by frequent recombination. Virology, 265, 218-225. (Pubitemid 30022217)
58. Pelser PB, Gravendeel B, van der Meijden R, (2002) Tackling speciose genera: species composition and phylogenetic position of Senecio sect. Jacobaea (Asteraceae) based on plastid and nrDNA sequences. American Journal of Botany, 89, 929-939. (Pubitemid 34714227)
59. Pelser PB, Nordenstam B, Kadereit JW, Watson LE, (2007) An ITS phylogeny of tribe Senecioneae (Asteraceae) and a new delimitation of Senecio L. Taxon, 56, 1077-1104.
60. Pelser PB, Kennedy AH, Tepe EJ, et al. (2010a) Patterns and causes of incongruence between plastid and nuclear Senecioneae (Asteraceae) phylogenies. American Journal of Botany, 97, 856-873.
61. Pelser PB, Tepe EJ, Kennedy AH, Watson LE, (2010b) The fate of Robinsonia (Asteraceae): sunk in Senecio, but still monophyletic? Phytotaxa, 5, 31-46.
62. Posada D, (2008) jModelTest: phylogenetic model averaging. Molecular Biology and Evolution, 25, 1253-1256. (Pubitemid 351882013)
63. Posada D, Crandall KA, (2001) Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proceedings of the National Academy of Sciences of the United States of America, 98, 13757-13762. (Pubitemid 33115971)
64. Quézel P, (1978) Analysis of the flora of Mediterranean and Saharan Africa. Annals of the Missouri Botanical Garden, 65, 479-534.
65. Rambaut A, (1996) Se-Al: Sequence Alignment Editor. Computer program and documentation distributed by the author, Available from.
66. Rambaut A, (2009) FigTree v1.3.1. Computer program and documentation distributed by the author, Available from.
67. Rambaut A, Drummond AJ, (2007) Tracer v1.5. Computer program and documentation distributed by the authors, Available from.
68. Rhymer JM, Simberloff DS, (1996) Genetic extinction through hybridization and introgression. Annual Review of Ecology and Systematics, 27, 83-109.
69. Rieseberg LH, Gerber D, (1995) Hybridization in the Catalina mahogany: RAPD evidence. Conservation Biology, 9, 199-203.
70. Rieseberg LH, Zona S, Aberbom L, Martin T, (1989) Hybridization in the island endemic, Catalina mahogany. Conservation Biology, 3, 52-58.
71. Ronquist F, Huelsenbeck J, Van der Mark P, (2005) MrBayes 3.1 manual draft 5/26/2005. Available from.
72. Roratto PA, Buchmann D, Santos S, Bartholomei-Santos ML, (2008) PCR-mediated recombination in development of microsatellite markers: mechanisms and implications. Genetics and Molecular Biology, 31, 58-63. (Pubitemid 351780651)
73. Sang T, Crawford DJ, Stuessy TF, (1995) Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: implications for biogeography and concerted evolution. Proceedings of the National Academy of Sciences of the United States of America, 92, 6813-6817.
74. Sang T, Crawford DJ, Stuessy TF, (1997) Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). American Journal of Botany, 84, 1120-1136. (Pubitemid 28106981)
75. Sanmartín I, Anderson CL, Alarcon M, Ronquist F, Aldasoro JJ, (2010) Bayesian island biogeography in a continental setting: the Rand Flora case. Biology Letters, 6, 703-707.
76. Santos-Guerra A, Reyes-Betancort JA, (2009) Euro+Med Notulae 4 [Notulae ad floram euro-mediterraneam pertinentes 26]. In: Willdenowia 39 (eds, Greuter W, Von Raab-Straube E,), pp. 330-331.
77. Simmons MP, Ochoterena H, (2000) Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology, 49, 369-381.
78. Soltis DE, Soltis PS, Bennett MD, Leitch IJ, (2003) Evolution of genome size in the angiosperms. American Journal of Botany, 90, 1596-1603. (Pubitemid 37446904)
79. Webb CJ, Sykes WR, Garnock-Jones PJ, (1988) Flora of New Zealand 4: Naturalised Pteridophytes, Gymnosperms, Dicotyledons. Botany Division, D.S.I.R., Christchurch.
80. Wendel JF, Schnabel A, Seelanan T, (1995) An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression. Molecular Phylogenetics and Evolution, 4, 298-313.
81. Wood TE, Takebayashi N, Barker MS, et al. (2009) The frequency of polyploid speciation in vascular plants. Proceedings of the National Academy of Sciences, 106, 13875-13879.
82. Zhang Q, Liu Y, Sodmergen, (2003) Examination of the cytoplasmic DNA in male reproductive cells to determine the potential for cytoplasmic inheritance in 295 angiosperm species. Plant and Cell Physiology, 44, 941-951. (Pubitemid 37231836)