메뉴 건너뛰기




Volumn 88, Issue 1, 2012, Pages 107-118

Metagenome-based screening reveals worldwide distribution of LOV-domain proteins

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; METAGENOME; OPEN READING FRAME; PHYLOGENY;

EID: 84855357289     PISSN: 00318655     EISSN: 17511097     Source Type: Journal    
DOI: 10.1111/j.1751-1097.2011.01024.x     Document Type: Article
Times cited : (27)

References (65)
  • 3
    • 63249121217 scopus 로고    scopus 로고
    • Application of "next-generation" sequencing technologies to microbial genetics
    • MacLean, D., J. D. G. Jones, and, D. J. Studholme, (2009) Application of "next-generation" sequencing technologies to microbial genetics. Nat. Rev. Microbiol. 7, 287-296.
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 287-296
    • MacLean, D.1    Jones, J.D.G.2    Studholme, D.J.3
  • 7
    • 52949115612 scopus 로고    scopus 로고
    • Microbiology - Metagenomics
    • Hugenholtz, P., and, G. W. Tyson, (2008) Microbiology-Metagenomics. Nature 455, 481-483.
    • (2008) Nature , vol.455 , pp. 481-483
    • Hugenholtz, P.1    Tyson, G.W.2
  • 8
    • 32844465575 scopus 로고    scopus 로고
    • Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea
    • DOI 10.1038/nature04435, PII NATURE04435
    • Frigaard, N. U., A. Martinez, T. J. Mincer, and, E. F. Delong, (2006) Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea. Nature 439, 847-850. (Pubitemid 43255702)
    • (2006) Nature , vol.439 , Issue.7078 , pp. 847-850
    • Frigaard, N.-U.1    Martinez, A.2    Mincer, T.J.3    DeLong, E.F.4
  • 9
    • 33947226782 scopus 로고    scopus 로고
    • Structural and functional diversity of the microbial kinome
    • Kannan, N., S. S. Taylor, Y. F. Zhai, J. C. Venter, and, G. Manning, (2007) Structural and functional diversity of the microbial kinome. PLoS Biol. 5, 467-478.
    • (2007) PLoS Biol. , vol.5 , pp. 467-478
    • Kannan, N.1    Taylor, S.S.2    Zhai, Y.F.3    Venter, J.C.4    Manning, G.5
  • 11
    • 55849150893 scopus 로고    scopus 로고
    • A computational screen for type i polyketide synthases in metagenomics shotgun data
    • Foerstner, K. U., T. Doerks, C. J. Creevey, A. Doerks, and, P. Bork, (2008) A computational screen for type I polyketide synthases in metagenomics shotgun data. PLoS ONE 3, e3515.
    • (2008) PLoS ONE , vol.3
    • Foerstner, K.U.1    Doerks, T.2    Creevey, C.J.3    Doerks, A.4    Bork, P.5
  • 13
    • 58149505604 scopus 로고    scopus 로고
    • Discovering functional novelty in metagenomes: Examples from light-mediated processes
    • Singh, A. H., T. Doerks, I. Letunic, J. Raes, and, P. Bork, (2009) Discovering functional novelty in metagenomes: Examples from light-mediated processes. J. Bacteriol. 191, 32-41.
    • (2009) J. Bacteriol. , vol.191 , pp. 32-41
    • Singh, A.H.1    Doerks, T.2    Letunic, I.3    Raes, J.4    Bork, P.5
  • 15
    • 4644354371 scopus 로고    scopus 로고
    • Metagenomics - The key to the uncultured microbes
    • DOI 10.1016/j.mib.2004.08.002, PII S1369527404000967
    • Streit, W. R., and, R. A. Schmitz, (2004) Metagenomics-The key to the uncultured microbes. Curr. Opin. Microbiol. 7, 492-498. (Pubitemid 39297129)
    • (2004) Current Opinion in Microbiology , vol.7 , Issue.5 , pp. 492-498
    • Streit, W.R.1    Schmitz, R.A.2
  • 17
    • 43849084187 scopus 로고    scopus 로고
    • Proteorhodopsins: An array of physiological roles?
    • DOI 10.1038/nrmicro1893, PII NRMICRO1893
    • Fuhrman, J. A., M. S. Schwalbach, and, U. Stingl, (2008) Proteorhodopsins: An array of physiological roles? Nat. Rev. Microbiol. 6, 488-494. (Pubitemid 351696441)
    • (2008) Nature Reviews Microbiology , vol.6 , Issue.6 , pp. 488-494
    • Fuhrman, J.A.1    Schwalbach, M.S.2    Stingl, U.3
  • 23
    • 3242747589 scopus 로고    scopus 로고
    • The bacterial counterparts of plant phototropins
    • DOI 10.1039/b400728j
    • Losi, A., (2004) The bacterial counterparts of plant phototropins. Photochem. Photobiol. Sci. 3, 566-574. (Pubitemid 38968069)
    • (2004) Photochemical and Photobiological Sciences , vol.3 , Issue.6 , pp. 566-574
    • Losi, A.1
  • 24
    • 33749014144 scopus 로고    scopus 로고
    • The blue-light receptor YtvA acts in the environmental stress signaling pathway of Bacillus subtilis
    • DOI 10.1128/JB.00691-06
    • Gaidenko, T. A., T. J. Kim, A. L. Weigel, M. S. Brody, and, C. W. Price, (2006) The blue-light receptor YtvA acts in the environmental stress signaling pathway of Bacillus subtilis. J. Bacteriol. 188, 6387-6395. (Pubitemid 44448581)
    • (2006) Journal of Bacteriology , vol.188 , Issue.17 , pp. 6387-6395
    • Gaidenko, T.A.1    Kim, T.-J.2    Weigel, A.L.3    Brody, M.S.4    Price, C.W.5
  • 25
    • 53749091743 scopus 로고    scopus 로고
    • Bacterial bilin- and flavin-binding photoreceptors
    • Losi, A., and, W. Gärtner, (2008) Bacterial bilin- and flavin-binding photoreceptors. Photochem. Photobiol. Sci. 7, 1168-1178.
    • (2008) Photochem. Photobiol. Sci. , vol.7 , pp. 1168-1178
    • Losi, A.1    Gärtner, W.2
  • 26
    • 72249087161 scopus 로고    scopus 로고
    • Distribution and phylogeny of light-oxygen-voltage-blue-light-signaling proteins in the three kingdoms of life
    • Krauss, U., B. Q. Minh, A. Losi, W. Gärtner, T. Eggert, A. von Haeseler, and, K. E. Jaeger, (2009) Distribution and phylogeny of light-oxygen-voltage-blue-light-signaling proteins in the three kingdoms of life. J. Bacteriol. 191, 7234-7242.
    • (2009) J. Bacteriol. , vol.191 , pp. 7234-7242
    • Krauss, U.1    Minh, B.Q.2    Losi, A.3    Gärtner, W.4    Eggert, T.5    Von Haeseler, A.6    Jaeger, K.E.7
  • 31
    • 0036224807 scopus 로고    scopus 로고
    • First evidence for phototropin-related blue-light receptors in prokaryotes
    • Losi, A., E. Polverini, B. Quest, and, W. Gärtner, (2002) First evidence for phototropin-related blue-light receptors in prokaryotes. Biophys. J. 82, 2627-2634. (Pubitemid 34441300)
    • (2002) Biophysical Journal , vol.82 , Issue.5 , pp. 2627-2634
    • Losi, A.1    Polverini, E.2    Quest, B.3    Gartner, W.4
  • 32
    • 38549165150 scopus 로고    scopus 로고
    • A blue light inducible two-component signal transduction system in the plant pathogen Pseudomonas syringae pv. tomato
    • DOI 10.1529/biophysj.107.108977
    • Cao, Z., V. Buttani, A. Losi, and, W. Gärtner, (2008) A blue light inducible two-component signal transduction system in the plant pathogen Pseudomonas syringae pv. tomato. Biophys. J. 94, 897-905. (Pubitemid 351162456)
    • (2008) Biophysical Journal , vol.94 , Issue.3 , pp. 897-905
    • Cao, Z.1    Buttani, V.2    Losi, A.3    Gartner, W.4
  • 36
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • Guindon, S., and, O. Gascuel, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704. (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 37
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones, D. T., W. R. Taylor, and, J. M. Thornton, (1992) The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8, 275-282.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 38
    • 33845873289 scopus 로고    scopus 로고
    • Interactive Tree Of Life (iTOL): An online tool for phylogenetic tree display and annotation
    • DOI 10.1093/bioinformatics/btl529
    • Letunic, I., and, P. Bork, (2007) Interactive Tree Of Life (iTOL): An online tool for phylogenetic tree display and annotation. Bioinformatics 23, 127-128. (Pubitemid 46017867)
    • (2007) Bioinformatics , vol.23 , Issue.1 , pp. 127-128
    • Letunic, I.1    Bork, P.2
  • 41
    • 0034622586 scopus 로고    scopus 로고
    • Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor, phototropin
    • DOI 10.1021/bi000585+
    • Salomon, M., J. M. Christie, E. Knieb, U. Lempert, and, W. R. Briggs, (2000) Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor, phototropin. Biochemistry 39, 9401-9410. (Pubitemid 30626330)
    • (2000) Biochemistry , vol.39 , Issue.31 , pp. 9401-9410
    • Salomon, M.1    Christie, J.M.2    Knieb, E.3    Lempert, U.4    Briggs, W.R.5
  • 44
    • 22644438480 scopus 로고    scopus 로고
    • C-di-GMP: The dawning of a novel bacterial signalling system
    • DOI 10.1111/j.1365-2958.2005.04697.x
    • Romling, U., M. Gomelsky, and, M. Y. Galperin, (2005) C-di-GMP: The dawning of a novel bacterial signalling system. Mol. Microbiol. 57, 629-639. (Pubitemid 41025947)
    • (2005) Molecular Microbiology , vol.57 , Issue.3 , pp. 629-639
    • Romling, U.1    Gomelsky, M.2    Galperin, M.Y.3
  • 45
    • 33845403359 scopus 로고    scopus 로고
    • Mechanisms of cyclic-di-GMP signaling in bacteria
    • DOI 10.1146/annurev.genet.40.110405.090423
    • Jenal, U., and, J. Malone, (2006) Mechanisms of cyclic-di-GMP signaling in bacteria. Annu. Rev. Genet. 40, 385-407. (Pubitemid 44956791)
    • (2006) Annual Review of Genetics , vol.40 , pp. 385-407
    • Jenal, U.1    Malone, J.2
  • 46
    • 46949102189 scopus 로고    scopus 로고
    • Cyclic-di-GMP regulates extracellular polysaccharide production, biofilm formation, and rugose colony development by Vibrio vulnificus
    • DOI 10.1128/AEM.00176-08
    • Nakhamchik, A., C. Wilde, and, D. A. Rowe-Magnus, (2008) Cyclic-di-GMP regulates extracellular polysaccharide production, biofilm formation, and rugose colony development by Vibrio vulnificus. Appl. Environ. Microbiol. 74, 4199-4209. (Pubitemid 351962445)
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.13 , pp. 4199-4209
    • Nakhamchik, A.1    Wilde, C.2    Rowe-Magnus, D.A.3
  • 48
    • 0028904345 scopus 로고
    • Cloning and characterization of a Chlamydia psittaci gene coding for a protein localized in the inclusion membrane of infected-cells
    • Rockey, D. D., R. A. Heinzen, and, T. Hackstadt, (1995) Cloning and characterization of a Chlamydia psittaci gene coding for a protein localized in the inclusion membrane of infected-cells. Mol. Microbiol. 15, 617-626.
    • (1995) Mol. Microbiol. , vol.15 , pp. 617-626
    • Rockey, D.D.1    Heinzen, R.A.2    Hackstadt, T.3
  • 49
    • 0030888561 scopus 로고    scopus 로고
    • Chlamydia psittaci IncA is phosphorylated by the host cell and is exposed on the cytoplasmic face of the developing inclusion
    • Rockey, D. D., D. Grosenbach, D. E. Hruby, M. G. Peacock, R. A. Heinzen, and, T. Hackstadt, (1997) Chlamydia psittaci IncA is phosphorylated by the host cell and is exposed on the cytoplasmic face of the developing inclusion. Mol. Microbiol. 24, 217-228. (Pubitemid 27160851)
    • (1997) Molecular Microbiology , vol.24 , Issue.1 , pp. 217-228
    • Rockey, D.D.1    Grosenbach, D.2    Hruby, D.E.3    Peacock, M.G.4    Heinzen, R.A.5    Hackstadt, T.6
  • 51
    • 0028946084 scopus 로고
    • Phylogenetic identification and in-situ detection of individual microbial-cells without cultivation
    • Amann, R. I., W. Ludwig, and, K. H. Schleifer, (1995) Phylogenetic identification and in-situ detection of individual microbial-cells without cultivation. Microbiol. Rev. 59, 143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 52
    • 0032192790 scopus 로고    scopus 로고
    • Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products
    • Handelsman, J., M. R. Rondon, S. F. Brady, J. Clardy, and, R. M. Goodman, (1998) Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products. Chem. Biol. 5, 245-249.
    • (1998) Chem. Biol. , vol.5 , pp. 245-249
    • Handelsman, J.1    Rondon, M.R.2    Brady, S.F.3    Clardy, J.4    Goodman, R.M.5
  • 53
    • 33847291893 scopus 로고    scopus 로고
    • Quantitative phylogenetic assessment of microbial communities in diverse environments
    • DOI 10.1126/science.1133420
    • von Mering, C., P. Hugenholtz, J. Raes, S. G. Tringe, T. Doerks, L. J. Jensen, N. Ward, and, P. Bork, (2007) Quantitative phylogenetic assessment of microbial communities in diverse environments. Science 315, 1126-1130. (Pubitemid 46328023)
    • (2007) Science , vol.315 , Issue.5815 , pp. 1126-1130
    • Von Mering, C.1    Hugenholtz, P.2    Raes, J.3    Tringe, S.G.4    Doerks, T.5    Jensen, L.J.6    Ward, N.7    Bork, P.8
  • 55
    • 63849269776 scopus 로고    scopus 로고
    • Prokaryotic genomes and diversity in surface ocean waters: Interrogating the global ocean sampling metagenome
    • Biers, E. J., S. L. Sun, and, E. C. Howard, (2009) Prokaryotic genomes and diversity in surface ocean waters: Interrogating the global ocean sampling metagenome. Appl. Environ. Microbiol. 75, 2221-2229.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 2221-2229
    • Biers, E.J.1    Sun, S.L.2    Howard, E.C.3
  • 57
    • 52149122066 scopus 로고    scopus 로고
    • Identification of six new photoactive yellow proteins - Diversity and structure-function relationships in a bacterial blue light photoreceptor
    • Kumauchi, M., M. T. Hara, P. Stalcup, A. H. Xie, and, W. D. Hoff, (2008) Identification of six new photoactive yellow proteins-Diversity and structure-function relationships in a bacterial blue light photoreceptor. Photochem. Photobiol. 84, 956-969.
    • (2008) Photochem. Photobiol. , vol.84 , pp. 956-969
    • Kumauchi, M.1    Hara, M.T.2    Stalcup, P.3    Xie, A.H.4    Hoff, W.D.5
  • 60
    • 79955469910 scopus 로고    scopus 로고
    • Old chromophores, new photoactivation paradigms, trendy applications: Flavins in blue light-sensing photoreceptors
    • Losi, A., and, W. Gärtner, (2011) Old chromophores, new photoactivation paradigms, trendy applications: Flavins in blue light-sensing photoreceptors. Photochem. Photobiol. 87, 491-510.
    • (2011) Photochem. Photobiol. , vol.87 , pp. 491-510
    • Losi, A.1    Gärtner, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.