Evaluating partition functions for multiscale models of DNA

Progress of Theoretical Physics Supplement

Volumn , Issue 191, 2011, Pages 109-129

  Hanke, Andreas ^a   Giovan, Stefan ^b   Levene, Stephen D ^b  

^a UNIVERSITY OF TEXAS AT BROWNSVILLE   (United States)

^b UNIVERSITY OF TEXAS AT DALLAS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84855334391     PISSN: 03759687     EISSN: 13474081     Source Type: Journal    
DOI: 10.1143/PTPS.191.109     Document Type: Conference Paper

References (20)

1. Y. Zhang et al., PLoS ONE 1 (2006), 0136.
2. Y. Zhang et al., Biophys. J. 90 (2006), 1903.
3. A. V. Vologodskii et al., J. Mol. Biol. 227 (1992), 1224.
4. A. V. Vologodskii and N. R. Cozzarelli, J. Mol. Biol. 232 (1993), 1130.
5. S. Medalion, S. M. Rappaport and Y. Rabin, J. Chem. Phys. 132 (2010), 045101.
6. C. Grindon et al., Phil. Trans. R. Soc. A 362 (2004), 1373.
7. S. A. Harris, C. A. Laughton and T. B. Liverpool, Nucleic Acids Res. 36 (2008), 21.
8. R. Lavery et al., Nucleic Acids Res. 38 (2010), 299.
9. I. Tobias, D. Swigon and B. D. Coleman, Phys. Rev. E 61 (2000), 747.
10. B. D. Coleman, D. Swigon and I. Tobias, Phys. Rev. E 61 (2000), 759.
11. E. Villa, A. Balaeff and K. Schulten, Proc. Natl. Acad. Sci. USA 102 (2005), 6783.
12. O. Gonzalez and J. H. Maddocks, Theoretica Chimica Acta. 106 (2001), 76.
13. F. Lankas et al., Phys. Chem. Chem. Phys. 11 (2009), 10565.
14. J. Walter, O. Gonzalez and J. H. Maddocks, Multiscale Modeling & Simulation 8 (2010), 1018.
15. J. F. Marko, Phys. Rev. E 59 (1999), 900.
16. J. Yan and J. F. Marko, Phys. Rev. Lett. 93 (2004), 108108.
17. H. Goldstein, C. P. Poole and J. L. Safko, Classical mechanics (Addison Wesley, 2002).
18. H. Meirovitch, Curr. Opinion Struct. Biol. 17 (2007), 181;
19. J. Mol. Recogn. 23 (2010), 153.
20. R. E. Dickerson, Nucleic Acids Res. 17 (1989), 1797.