메뉴 건너뛰기




Volumn 7, Issue 12, 2011, Pages

Information routing driven by background chatter in a signaling network

Author keywords

[No Author keywords available]

Indexed keywords

CELL CULTURE; MODULATION; SIGNAL TRANSDUCTION; SIGNALING;

EID: 84855280819     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1002297     Document Type: Article
Times cited : (9)

References (45)
  • 1
    • 33644524741 scopus 로고    scopus 로고
    • Cell-signalling dynamics in time and space
    • Kholodenko BN, (2006) Cell-signalling dynamics in time and space. Nat Rev Mol Cell Biol 7: 165-176.
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 165-176
    • Kholodenko, B.N.1
  • 3
    • 58449099653 scopus 로고    scopus 로고
    • G-protein coupled receptor signaling architecture of mammalian immune cells
    • Polouliakh N, Nock R, Nielsen F, Kitano H, (2009) G-protein coupled receptor signaling architecture of mammalian immune cells. PLoS ONE 4: e4189.
    • (2009) PLoS ONE , vol.4
    • Polouliakh, N.1    Nock, R.2    Nielsen, F.3    Kitano, H.4
  • 4
    • 33746889808 scopus 로고    scopus 로고
    • A comprehensive pathway map of epidermal growth factor receptor signaling
    • Oda K, Matsuoka Y, Funahashi A, Kitano H, (2005) A comprehensive pathway map of epidermal growth factor receptor signaling. Mol Syst Biol 1: 2005.0010.
    • (2005) Mol Syst Biol , vol.1
    • Oda, K.1    Matsuoka, Y.2    Funahashi, A.3    Kitano, H.4
  • 5
    • 33745463739 scopus 로고    scopus 로고
    • A comprehensive map of the toll-like receptor signaling network
    • Oda K, Kitano H, (2006) A comprehensive map of the toll-like receptor signaling network. Mol Syst Biol 2: 2006.0015.
    • (2006) Mol Syst Biol , vol.2
    • Oda, K.1    Kitano, H.2
  • 7
    • 33847351136 scopus 로고    scopus 로고
    • The JAK-STAT signaling pathway: input and output integration
    • Murray PJ, (2007) The JAK-STAT signaling pathway: input and output integration. J Immunol 178: 2623-2629.
    • (2007) J Immunol , vol.178 , pp. 2623-2629
    • Murray, P.J.1
  • 8
    • 53549100745 scopus 로고    scopus 로고
    • Signal integration in bacterial two-component regulatory systems
    • Mitrophanov AY, Groisman EA, (2008) Signal integration in bacterial two-component regulatory systems. Gene Dev 22: 2601-2611.
    • (2008) Gene Dev , vol.22 , pp. 2601-2611
    • Mitrophanov, A.Y.1    Groisman, E.A.2
  • 9
    • 66149121458 scopus 로고    scopus 로고
    • Complexity in bacterial cell-cell com- munication: quorum signal integration and subpopulation signaling in the Bacillus subtilis phos- phorelay
    • Bischofs IB, Hug JA, Liu AW, Wolf DM, Arkin AP, (2009) Complexity in bacterial cell-cell com- munication: quorum signal integration and subpopulation signaling in the Bacillus subtilis phos- phorelay. Proc Natl Acad Sci U S A 106: 6459-6464.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 6459-6464
    • Bischofs, I.B.1    Hug, J.A.2    Liu, A.W.3    Wolf, D.M.4    Arkin, A.P.5
  • 10
    • 0029761702 scopus 로고    scopus 로고
    • Signal-transducing protein phosphorylation cascades mediated by Ras/Rho proteins in the mammalian cell: the potential for multiplex signalling
    • Denhardt DT, (1996) Signal-transducing protein phosphorylation cascades mediated by Ras/Rho proteins in the mammalian cell: the potential for multiplex signalling. Biochem J 318: 729-747.
    • (1996) Biochem J , vol.318 , pp. 729-747
    • Denhardt, D.T.1
  • 12
    • 33847324364 scopus 로고    scopus 로고
    • Cross-talk and decision making in MAP kinase pathways
    • McClean MN, Mody A, Broach JR, Ramanathan S, (2007) Cross-talk and decision making in MAP kinase pathways. Nat Genet 39: 409-414.
    • (2007) Nat Genet , vol.39 , pp. 409-414
    • McClean, M.N.1    Mody, A.2    Broach, J.R.3    Ramanathan, S.4
  • 13
    • 41349119880 scopus 로고    scopus 로고
    • Stochastic switching as a survival strategy influctuating environments
    • Acar M, Mettetal JT, van Oudenaarden A, (2008) Stochastic switching as a survival strategy influctuating environments. Nat Genet 40: 471-475.
    • (2008) Nat Genet , vol.40 , pp. 471-475
    • Acar, M.1    Mettetal, J.T.2    van Oudenaarden, A.3
  • 14
    • 50649120833 scopus 로고    scopus 로고
    • Metabolic gene regulation in a dynamically changing environment
    • Bennett MR, Pang WL, Ostroff NA, Baumgartner BL, Nayak S, et al. (2008) Metabolic gene regulation in a dynamically changing environment. Nature 454: 1119-1122.
    • (2008) Nature , vol.454 , pp. 1119-1122
    • Bennett, M.R.1    Pang, W.L.2    Ostroff, N.A.3    Baumgartner, B.L.4    Nayak, S.5
  • 15
    • 41149165188 scopus 로고    scopus 로고
    • Emergent decision-making in biological signal transduction networks
    • Helikar T, Konvalina J, Heidel J, Rogers J, (2008) Emergent decision-making in biological signal transduction networks. Proc Natl Acad Sci U S A 105: 1913-1918.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 1913-1918
    • Helikar, T.1    Konvalina, J.2    Heidel, J.3    Rogers, J.4
  • 16
    • 0032879544 scopus 로고    scopus 로고
    • Genetic control of flower morphogenesis in Arabidopsis thaliana: a logical analysis
    • Mendoza L, Thieffry D, Alvarez-Buylla E, (1999) Genetic control of flower morphogenesis in Arabidopsis thaliana: a logical analysis. Bioinformatics 15: 593-606.
    • (1999) Bioinformatics , vol.15 , pp. 593-606
    • Mendoza, L.1    Thieffry, D.2    Alvarez-Buylla, E.3
  • 17
    • 2342648924 scopus 로고    scopus 로고
    • Integrating high-throughput and computational data elucidates bacterial networks
    • Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO, (2004) Integrating high-throughput and computational data elucidates bacterial networks. Nature 429: 92-96.
    • (2004) Nature , vol.429 , pp. 92-96
    • Covert, M.W.1    Knight, E.M.2    Reed, J.L.3    Herrgard, M.J.4    Palsson, B.O.5
  • 18
    • 33747874092 scopus 로고    scopus 로고
    • Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle
    • Faure A, Naldi A, Chaouiya C, Thieffry D, (2006) Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle. Bioinformatics 22: e124-131.
    • (2006) Bioinformatics , vol.22
    • Faure, A.1    Naldi, A.2    Chaouiya, C.3    Thieffry, D.4
  • 19
    • 45849093636 scopus 로고    scopus 로고
    • Boolean network model predicts cell cycle sequence of fission yeast
    • Davidich MI, Bornholdt S, (2008) Boolean network model predicts cell cycle sequence of fission yeast. PLoS ONE 3: e1672.
    • (2008) PLoS ONE , vol.3
    • Davidich, M.I.1    Bornholdt, S.2
  • 20
    • 0034715919 scopus 로고    scopus 로고
    • Shape-dependent control of cell growth, differentiation, and apoptosis: Switching between attractors in cell regulatory networks
    • Huang S, Ingber DE, (2000) Shape-dependent control of cell growth, differentiation, and apoptosis: Switching between attractors in cell regulatory networks. Exp Cell Res 261: 91-103.
    • (2000) Exp Cell Res , vol.261 , pp. 91-103
    • Huang, S.1    Ingber, D.E.2
  • 21
    • 78049424847 scopus 로고    scopus 로고
    • Diversity and plasticity of Th cell types predicted from regulatory network modelling
    • Naldi A, Carneiro J, Chaouiya C, Thieffry D, (2010) Diversity and plasticity of Th cell types predicted from regulatory network modelling. PLoS Comput Biol 6: e1000912.
    • (2010) PLoS Comput Biol , vol.6
    • Naldi, A.1    Carneiro, J.2    Chaouiya, C.3    Thieffry, D.4
  • 22
    • 0037686112 scopus 로고    scopus 로고
    • The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in drosophila melanogaster
    • Albert R, Othmer HG, (2003) The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in drosophila melanogaster. J Theor Biol 223: 1-18.
    • (2003) J Theor Biol , vol.223 , pp. 1-18
    • Albert, R.1    Othmer, H.G.2
  • 25
    • 77952671109 scopus 로고    scopus 로고
    • Receptor cross-talk in angiogenesis: Mapping environmental cues to cell phenotype using a stochastic, boolean signaling network model
    • Bauer AL, Jackson TL, Jiang Y, Rohlf T, (2010) Receptor cross-talk in angiogenesis: Mapping environmental cues to cell phenotype using a stochastic, boolean signaling network model. J Theor Biol 264: 838-846.
    • (2010) J Theor Biol , vol.264 , pp. 838-846
    • Bauer, A.L.1    Jackson, T.L.2    Jiang, Y.3    Rohlf, T.4
  • 26
    • 78650698914 scopus 로고    scopus 로고
    • Relaxation dynamics and frequency response of a noisy cell signaling network
    • Rue P, Pons AJ, Domedel-Puig N, Garcia-Ojalvo J, (2010) Relaxation dynamics and frequency response of a noisy cell signaling network. Chaos 20: 045110.
    • (2010) Chaos , vol.20 , pp. 045110
    • Rue, P.1    Pons, A.J.2    Domedel-Puig, N.3    Garcia-Ojalvo, J.4
  • 27
    • 56749160113 scopus 로고    scopus 로고
    • Design principles of biochemical oscillators
    • Novák B, Tyson JJ, (2008) Design principles of biochemical oscillators. Nat Rev Mol Cell Biol 9: 981-991.
    • (2008) Nat Rev Mol Cell Biol , vol.9 , pp. 981-991
    • Novák, B.1    Tyson, J.J.2
  • 28
    • 42649096299 scopus 로고    scopus 로고
    • Collective behavior in gene regulation: the cell is an oscillator, the cell cycle a developmental process
    • Klevecz RR, Li CM, Marcus I, Frankel PH, (2008) Collective behavior in gene regulation: the cell is an oscillator, the cell cycle a developmental process. FEBS J 275: 2372-84.
    • (2008) FEBS J , vol.275 , pp. 2372-2384
    • Klevecz, R.R.1    Li, C.M.2    Marcus, I.3    Frankel, P.H.4
  • 29
    • 75849128795 scopus 로고    scopus 로고
    • A circadian clock in macrophages controls inflammatory immune responses
    • Keller M, Mazuch J, Abraham U, Eom G, Herzog E, et al. (2009) A circadian clock in macrophages controls inflammatory immune responses. Proc Natl Acad Sci U S A 106: 21407-21412.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 21407-21412
    • Keller, M.1    Mazuch, J.2    Abraham, U.3    Eom, G.4    Herzog, E.5
  • 30
    • 46249112705 scopus 로고    scopus 로고
    • Boolean network models of cellular regulation: prospects and limitations
    • Bornholdt S, (2008) Boolean network models of cellular regulation: prospects and limitations. J R Soc Interface 5 (Suppl 1): S85-94.
    • (2008) J R Soc Interface , vol.5 , Issue.SUPPL. 1
    • Bornholdt, S.1
  • 31
    • 84891657889 scopus 로고    scopus 로고
    • A new implementation of Yen's ranking loopless paths algorithm
    • Martins EQV, Pascoal MMB, (2003) A new implementation of Yen's ranking loopless paths algorithm. 4OR- Q J Oper Res 1: 121-133.
    • (2003) 4OR - Q J Oper Res , vol.1 , pp. 121-133
    • Martins, E.Q.V.1    Pascoal, M.M.B.2
  • 32
    • 2942588906 scopus 로고    scopus 로고
    • Mathematical and computational models of immune-receptor signalling
    • Goldstein B, Faeder JR, Hlavacek WS, (2004) Mathematical and computational models of immune-receptor signalling. Nat Rev Immunol 4: 445-56.
    • (2004) Nat Rev Immunol , vol.4 , pp. 445-456
    • Goldstein, B.1    Faeder, J.R.2    Hlavacek, W.S.3
  • 33
    • 33845883279 scopus 로고    scopus 로고
    • A driving force for change: interstitial flow as a morphoregulator
    • Rutkowski JM, Swartz MA, (2007) A driving force for change: interstitial flow as a morphoregulator. Trends Cell Biol 17: 44-50.
    • (2007) Trends Cell Biol , vol.17 , pp. 44-50
    • Rutkowski, J.M.1    Swartz, M.A.2
  • 34
    • 77956257482 scopus 로고    scopus 로고
    • Fibroblast response to interstitial flow: A state-of-the-art review
    • Dan L, Chua CK, Leong KF, (2010) Fibroblast response to interstitial flow: A state-of-the-art review. Biotechnol Bioeng 107: 1-10.
    • (2010) Biotechnol Bioeng , vol.107 , pp. 1-10
    • Dan, L.1    Chua, C.K.2    Leong, K.F.3
  • 35
    • 78349311747 scopus 로고    scopus 로고
    • Cancer secretomics reveal pathophysiological pathways in cancer molecular oncology
    • Karagiannis GS, Pavlou MP, Diamandis EP, (2010) Cancer secretomics reveal pathophysiological pathways in cancer molecular oncology. Mol Oncol 4: 496-510.
    • (2010) Mol Oncol , vol.4 , pp. 496-510
    • Karagiannis, G.S.1    Pavlou, M.P.2    Diamandis, E.P.3
  • 37
    • 33947269807 scopus 로고    scopus 로고
    • Oscillations in the immune system
    • Stark J, Chan C, George AJT, (2007) Oscillations in the immune system. Immunol Rev 216: 213-231.
    • (2007) Immunol Rev , vol.216 , pp. 213-231
    • Stark, J.1    Chan, C.2    George, A.J.T.3
  • 39
    • 22144467313 scopus 로고    scopus 로고
    • An intracellular phosphate buffer filters transient fluctuations in extracellular phosphate levels
    • Thomas MR, O'Shea EK, (2005) An intracellular phosphate buffer filters transient fluctuations in extracellular phosphate levels. Proc Natl Acad Sci U S A 102: 9565-70.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 9565-9570
    • Thomas, M.R.1    O'Shea, E.K.2
  • 40
    • 0030176270 scopus 로고    scopus 로고
    • Evidence that a single peptide-MHC complex on a target cell can elicit a cytolytic T cell response
    • Sykulev Y, Joo M, Vturina I, Tsomides TJ, Eisen HN, (1996) Evidence that a single peptide-MHC complex on a target cell can elicit a cytolytic T cell response. Immunity 4: 565-571.
    • (1996) Immunity , vol.4 , pp. 565-571
    • Sykulev, Y.1    Joo, M.2    Vturina, I.3    Tsomides, T.J.4    Eisen, H.N.5
  • 41
  • 42
    • 45549083275 scopus 로고    scopus 로고
    • Activation of cyclic AMP signaling in Ae2-deficient mouse fibroblasts
    • Mardones P, Medina JF, Elferink RPJO, (2008) Activation of cyclic AMP signaling in Ae2-deficient mouse fibroblasts. J Biol Chem 283: 12146-53.
    • (2008) J Biol Chem , vol.283 , pp. 12146-12153
    • Mardones, P.1    Medina, J.F.2    Elferink, R.P.J.O.3
  • 43
    • 0034699348 scopus 로고    scopus 로고
    • Transient deactivation of ERK signalling is sufficient for stable entry into G0 in primary avian fibroblasts
    • Black E, Clark W, Gillespie D, (2000) Transient deactivation of ERK signalling is sufficient for stable entry into G0 in primary avian fibroblasts. Curr Biol 10: 1119-1122.
    • (2000) Curr Biol , vol.10 , pp. 1119-1122
    • Black, E.1    Clark, W.2    Gillespie, D.3
  • 44
    • 0028897281 scopus 로고
    • Stochastic resonance and the benefits of noise: from ice ages to crayfish and squids
    • Wiesenfeld K, Moss F, (1995) Stochastic resonance and the benefits of noise: from ice ages to crayfish and squids. Nature 373: 33-36.
    • (1995) Nature , vol.373 , pp. 33-36
    • Wiesenfeld, K.1    Moss, F.2
  • 45
    • 53749085729 scopus 로고    scopus 로고
    • Cytokine-induced signaling networks prioritize dynamic range over signal strength
    • Janes KA, Reinhardt HC, Yaffe MB, (2008) Cytokine-induced signaling networks prioritize dynamic range over signal strength. Cell 135: 343-54.
    • (2008) Cell , vol.135 , pp. 343-354
    • Janes, K.A.1    Reinhardt, H.C.2    Yaffe, M.B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.