Low resolution structure and dynamics of a colicin-receptor complex determined by neutron scattering

Journal of Biological Chemistry

Volumn 287, Issue 1, 2012, Pages 337-346

  Clifton, Luke A ^a   Johnson, Christopher L ^b   Solovyova, Alexandra S ^b   Callow, Phil ^c   Weiss, Kevin L ^d   Ridley, Helen ^b   Le Brun, Anton P ^b   Kinane, Christian J ^a   Webster, John R P ^a   Holt, Stephen A ^a,e   Lakey, Jeremy H ^b  

^a RUTHERFORD APPLETON LABORATORY   (United Kingdom)

^b NEWCASTLE UNIVERSITY   (United Kingdom)

^c INSTITUT LAUE LANGEVIN   (France)

^d OAK RIDGE NATIONAL LABORATORY   (United States)

^e AUSTRALIAN NUCLEAR SCIENCE AND TECHNOLOGY ORGANISATION   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBACTERIAL PROTEINS; BACTERIAL TOXIN; BREWSTER ANGLE MICROSCOPY; COLICINS; COMPLEX STRUCTURE; DEUTERATIONS; LIPID MONOLAYER; LOW RESOLUTION; NEUTRON REFLECTIVITY; OUTER MEMBRANE; OUTER MEMBRANE PROTEIN; PROTEIN COMPLEXES; REAL TIME; THREE-DIMENSIONAL STRUCTURE; TRANS-MEMBRANE PORES;

CELL MEMBRANES; CYTOLOGY; DEUTERIUM; ESCHERICHIA COLI; LIPID BILAYERS; MONOLAYERS; NEUTRON SCATTERING; NEUTRONS; THREE DIMENSIONAL;

PROTEINS;

COLICIN N; OUTER MEMBRANE PROTEIN F;

ARTICLE; BREWSTER ANGLE MICROSCOPY; LIPID MONOLAYER; MOLECULAR DYNAMICS; NEUTRON SCATTERING; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS;

COLICINS; DETERGENTS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; MODELS, MOLECULAR; NEUTRON DIFFRACTION; PHOSPHATIDYLGLYCEROLS; PORINS; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; PROTEIN TRANSPORT; SCATTERING, SMALL ANGLE; SURFACE PROPERTIES; TIME FACTORS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 84855266337     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.302901     Document Type: Article

References (67)

1. Xie, K., and Dalbey, R. E. (2008) Nat. Rev. Microbiol. 6, 234-244
2. Berks, B. C., Palmer, T., and Sargent, F. (2005) Curr. Opin. Microbiol. 8, 174-181
3. Schmitz, A., Herrgen, H., Winkeler, A., and Herzog, V. (2000) J. Cell Biol. 148, 1203-1212
4. Thoren, K. L., and Krantz, B. A. (2011) Mol. Microbiol. 80, 588-595
5. Osickova, A., Masin, J., Fayolle, C., Krusek, J., Basler, M., Pospisilova, E., Leclerc, C., Osicka, R., and Sebo, P. (2010) Mol. Microbiol. 75, 1550-1562
6. Ren, J., Kachel, K., Kim, H., Malenbaum, S. E., Collier, R. J., and London, E. (1999) Science 284, 955-957
7. Mosbahi, K., Lemaître, C., Keeble, A. H., Mobasheri, H., Morel, B., James, R., Moore, G. R., Lea, E. J., and Kleanthous, C. (2002) Nat. Struct. Biol. 9, 476-484
8. Jakes, K. S., Kienker, P. K., Slatin, S. L., and Finkelstein, A. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 4321-4326
9. Cascales, E., Buchanan, S. K., Duché, D., Kleanthous, C., Lloubès, R., Postle, K., Riley, M., Slatin, S., and Cavard, D. (2007) Microbiol. Mol. Biol. Rev. 71, 158-229
10. Vollmer, W., Pilsl, H., Hantke, K., Höltje, J. V., and Braun, V. (1997) J. Bacteriol. 179, 1580-1583
11. Evans, L. J., Cooper, A., and Lakey, J. H. (1996) J. Mol. Biol. 255, 559-563
12. Yamashita, E., Zhalnina, M. V., Zakharov, S. D., Sharma, O., and Cramer, W. A. (2008) EMBO J. 27, 2171-2180
13. Evans, L. J., Labeit, S., Cooper, A., Bond, L. H., and Lakey, J. H. (1996) Biochemistry 35, 15143-15148
14. Bénédetti, H., Lloubès, R., Lazdunski, C., and Letellier, L. (1992) EMBO J. 11, 441-447
15. Baboolal, T. G., Conroy, M. J., Gill, K., Ridley, H., Visudtiphole, V., Bullough, P. A., and Lakey, J. H. (2008) Structure 16, 371-379
16. Anderluh, G., Hong, Q., Boetzel, R., MacDonald, C., Moore, G. R., Virden, R., and Lakey, J. H. (2003) J. Biol. Chem. 278, 21860-21868
17. Gokce, I., Raggett, E. M., Hong, Q., Virden, R., Cooper, A., and Lakey, J. H. (2000) J. Mol. Biol. 304, 621-632
18. Raggett, E. M., Bainbridge, G., Evans, L. J., Cooper, A., and Lakey, J. H. (1998) Mol. Microbiol. 28, 1335-1343
19. Lakey, J. H., and Slatin, S. L. (2001) in Pore-forming Toxins (Van Der Goot, F. G., ed) pp. 131-161, Springer Verlag, Heidelberg
20. Lakey, J. H., Massotte, D., Heitz, F., Dasseux, J. L., Faucon, J. F., Parker, M. W., and Pattus, F. (1991) Eur. J. Biochem. 196, 599-607
21. van der Goot, F. G., González-Mañas, J. M., Lakey, J. H., and Pattus, F. (1991) Nature 354, 408-410
22. Bullock, J. O., and Cohen, F. S. (1986) Biochim. Biophys. Acta. 856, 101-108
23. Dover, L. G., Evans, L. J., Fridd, S. L., Bainbridge, G., Raggett, E. M., and Lakey, J. H. (2000) Biochemistry 39, 8632-8637
24. Jeanteur, D., Schirmer, T., Fourel, D., Simonet, V., Rummel, G., Widmer, C., Rosenbusch, J. P., Pattus, F., and Pagès, J. M. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 10675-10679
25. Stora, T., Lakey, J. H., and Vogel, H. (1999) Angew. Chem. Int. Ed. Engl. 38, 389-392
26. Zakharov, S. D., Eroukova, V. Y., Rokitskaya, T. I., Zhalnina, M. V., Sharma, O., Loll, P. J., Zgurskaya, H. I., Antonenko, Y. N., and Cramer, W. A. (2004) Biophys. J. 87, 3901-3911
27. Housden, N. G., Wojdyla, J. A., Korczynska, J., Grishkovskaya, I., Kirkpatrick, N., Brzozowski, A. M., and Kleanthous, C. (2010) Proc. Natl. Acad. Sci. U.S.A. 107, 21412-21417
28. Bainbridge, G., Armstrong, G. A., Dover, L. G., Whelan, K. F., and Lakey, J. H. (1998) FEBS Lett. 432, 117-122
29. Krepkiy, D., Mihailescu, M., Freites, J. A., Schow, E. V., Worcester, D. L., Gawrisch, K., Tobias, D. J., White, S. H., and Swartz, K. J. (2009) Nature 462, 473-479
30. Chenal, A., Prongidi-Fix, L., Perier, A., Aisenbrey, C., Vernier, G., Lambotte, S., Haertlein, M., Dauvergne, M. T., Fragneto, G., Bechinger, B., Gillet, D., Forge, V., and Ferrand, M. (2009) J. Mol. Biol. 391, 872-883
31. Garavito, R. M., and Rosenbusch, J. P. (1986) Methods Enzymol. 125, 309-328
32. Artero, J. B., Härtlein, M., McSweeney, S., and Timmins, P. (2005) Acta Crystallogr. D Biol. Crystallogr. 61, 1541-1549
33. Lakey, J. H., Watts, J. P., and Lea, E. J. (1985) Biochim. Biophys. Acta 817, 208-216
34. Fridd, S. L., Gökçe, I., and Lakey, J. H. (2002) Biochimie 84, 477-483
35. Webster, J., Holt, S., and Dalgliesh, R. (2006) Physica B Condensed Matter 385, 1164-1166
36. Penfold, J., Ward, R. C., and Williams, W. G. (1987) J. Phys. E Sci. Instrum. 20, 1411-1417
37. Lu, J. R., and Thomas, R. K. (1998) J. Chem. Soc. Faraday Trans. 94, 995-1018
38. Clifton, L. A., Green, R. J., Hughes, A. V., and Frazier, R. A. (2008) J. Phys. Chem. B 112, 15907-15913
39. Lad, M. D., Birembaut, F., Clifton, L. A., Frazier, R. A., Webster, J. R., and Green, R. J. (2007) Biophys. J. 92, 3575-3586
40. Penfold, J. (2002) Curr. Opin. Colloid Interface Sci. 7, 139-147
41. Svergun, D. I., and Nierhaus, K. H. (2000) J. Biol. Chem. 275, 14432-14439
42. Svergun, D. I. (1999) Biophys. J. 76, 2879-2886
43. Volkov, V. V., and Svergun, D. I. (2003) J. Appl. Crystallogr. 36, 860-864
44. McConlogue, C. W., and Vanderlick, T. K. (1997) Langmuir 13, 7158-7164
45. Schindler, H., and Rosenbusch, J. P. (1981) Proc. Natl. Acad. Sci. U.S.A. 78, 2302-2306
46. Dargent, B., Charbit, A., Hofnung, M., and Pattus, F. (1988) J. Mol. Biol. 201, 497-506
47. Evans, L. J., Goble, M. L., Hales, K. A., and Lakey, J. H. (1996) Biochemistry 35, 13180-13185
48. Vetter, I. R., Parker, M. W., Tucker, A. D., Lakey, J. H., Pattus, F., and Tsernoglou, D. (1998) Structure 6, 863-874
49. Watanabe, Y., Sano, Y., and Inoko, Y. (1999) Jpn. J. Appl. Phys. 38, Suppl. 1, 180-182
50. Mo, Y., Lee, B. K., Ankner, J. F., Becker, J. M., and Heller, W. T. (2008) J. Phys. Chem. B 112, 13349-13354
51. Watanabe, Y., and Inoko, Y. (2005) Protein J. 24, 167-174
52. Cowan, S. W., Schirmer, T., Rummel, G., Steiert, M., Ghosh, R., Pauptit, R. A., Jansonius, J. N., and Rosenbusch, J. P. (1992) Nature 358, 727-733
53. Jarosławski, S., Duquesne, K., Sturgis, J. N., and Scheuring, S. (2009) Mol. Microbiol. 74, 1211-1222
54. Hoenger, A., Ghosh, R., Schoenenberger, C. A., Aebi, U., and Engel, A. (1993) J. Struct. Biol. 111, 212-221
55. Spector, J., Zakharov, S., Lill, Y., Sharma, O., Cramer, W. A., and Ritchie, K. (2010) Biophys. J. 99, 3880-3886
56. Cisneros, D. A., Muller, D. J., Daud, S. M., and Lakey, J. H. (2006) Angew. Chem. Int. Ed. Engl. 45, 3252-3256
57. Jakes, K. S., and Finkelstein, A. (2010) Mol. Microbiol. 75, 567-578
58. Housden, N. G., Loftus, S. R., Moore, G. R., James, R., and Kleanthous, C. (2005) Proc. Natl. Acad. Sci. U.S.A. 102, 13849-13854
59. Trewhella, J., Anderson, S., Fox, R., Gogol, E., Khan, S., Engelman, D., and Zaccai, G. (1983) Biophys. J. 42, 233-241
60. Trewhella, J., Popot, J. L., Zaccaï, G., and Engelman, D. M. (1986) EMBO J. 5, 3045-3049
61. Nikaido, H. (2003) Microbiol. Mol. Biol. Rev. 67, 593-656
62. Cao, Z., and Klebba, P. E. (2002) Biochimie 84, 399-412
63. Chauleau, M., Mora, L., Serba, J., and de Zamaroczy, M. (2011) J. Biol. Chem. 286, 29397-29407
64. El Kouhen, R., and Pagès, J. M. (1996) J. Bacteriol. 178, 5316-5319
65. Hessa, T., Kim, H., Bihlmaier, K., Lundin, C., Boekel, J., Andersson, H., Nilsson, I., White, S. H., and von Heijne, G. (2005) Nature 433, 377-381
66. Rapaport, D. (2005) J. Cell Biol. 171, 419-423
67. Chacinska, A., Koehler, C. M., Milenkovic, D., Lithgow, T., and Pfanner, N. (2009) Cell 138, 628-644