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Volumn 139, Issue 9, 2011, Pages 1135-1142

Isolation and characterization of a new repetitive DNA family recently amplified in the Mesoamerican gene pool of the common bean (Phaseolus vulgaris L., Fabaceae)

Author keywords

Fluorescent in situ hybridization (FISH); Mesoamerican gene pool; Phaseolus vulgaris; Repetitive DNA family; Southern blot

Indexed keywords

PLANT DNA;

EID: 84855190648     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10709-011-9615-8     Document Type: Article
Times cited : (7)

References (37)
  • 1
    • 39749092456 scopus 로고    scopus 로고
    • Prebreeding in common bean and use of genetic diversity from wild germplasm
    • Acosta-Gallegos JA, Kelly JD, Gepts P (2007) Prebreeding in common bean and use of genetic diversity from wild germplasm. Crop Sci 47: 44-59.
    • (2007) Crop Sci , vol.47 , pp. 44-59
    • Acosta-Gallegos, J.A.1    Kelly, J.D.2    Gepts, P.3
  • 4
    • 0018800089 scopus 로고
    • A rapid alkaline extraction procedure for screening recombinant plasmid DNA
    • Birnboim HC, Doly J (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7: 1513-1523.
    • (1979) Nucleic Acids Res , vol.7 , pp. 1513-1523
    • Birnboim, H.C.1    Doly, J.2
  • 6
    • 61649083324 scopus 로고    scopus 로고
    • Phylogeographic analysis of the chloroplast DNA variation in wild common bean (Phaseolus vulgaris L.) in the Americas
    • Chácon S MI, Pickersgill B, Debouck DG, Salvador Arias J (2007) Phylogeographic analysis of the chloroplast DNA variation in wild common bean (Phaseolus vulgaris L.) in the Americas. Plant Syst Evol 166: 175-195.
    • (2007) Plant Syst Evol , vol.166 , pp. 175-195
    • Chácon, S.M.I.1    Pickersgill, B.2    Debouck, D.G.3    Salvador Arias, J.4
  • 7
    • 0028108183 scopus 로고
    • The evolutionary dynamics of repetitive DNA in eukaryotes
    • Charlesworth B, Sniegowski P, Stephan W (1994) The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371: 215-220.
    • (1994) Nature , vol.371 , pp. 215-220
    • Charlesworth, B.1    Sniegowski, P.2    Stephan, W.3
  • 8
    • 70350645172 scopus 로고    scopus 로고
    • A nomadic subtelomeric disease resistance gene cluster in common bean
    • David P, Chen NWG, Pedrosa-Harand A et al (2009) A nomadic subtelomeric disease resistance gene cluster in common bean. Plant Physiol 151: 1048-1065.
    • (2009) Plant Physiol , vol.151 , pp. 1048-1065
    • David, P.1    Chen, N.W.G.2    Pedrosa-Harand, A.3
  • 9
    • 0030769634 scopus 로고    scopus 로고
    • Molecular analysis of Phaseolus vulgaris rDNA unit and characterization of a satellite DNA homologous to IGS subrepeats
    • Falquet J, Creusot F, Dron M (1997) Molecular analysis of Phaseolus vulgaris rDNA unit and characterization of a satellite DNA homologous to IGS subrepeats. Plant Physiol Biochem 35: 611-622.
    • (1997) Plant Physiol Biochem , vol.35 , pp. 611-622
    • Falquet, J.1    Creusot, F.2    Dron, M.3
  • 10
    • 78349247548 scopus 로고    scopus 로고
    • A fluorescence in situ hybridization system for karyotyping soybean
    • Findley SD, Cannon S, Varala K et al (2010) A fluorescence in situ hybridization system for karyotyping soybean. Genetics 185: 727-744.
    • (2010) Genetics , vol.185 , pp. 727-744
    • Findley, S.D.1    Cannon, S.2    Varala, K.3
  • 11
    • 77954457827 scopus 로고    scopus 로고
    • Cytogenetic map of common bean (Phaseolus vulgaris L.)
    • Fonsêca A, Ferreira J, Santos TRB et al (2010) Cytogenetic map of common bean (Phaseolus vulgaris L.). Chromosome Res 18: 487-502.
    • (2010) Chromosome Res , vol.18 , pp. 487-502
    • Fonsêca, A.1    Ferreira, J.2    Santos, T.R.B.3
  • 12
    • 0033103333 scopus 로고    scopus 로고
    • The Tpv2 family of retrotransposon of Phaseolus vulgaris: structure, integration characteristics, and use for genotype classification
    • Garber K, Bilic I, Pusch O et al (1999) The Tpv2 family of retrotransposon of Phaseolus vulgaris: structure, integration characteristics, and use for genotype classification. Plant Mol Biol 39: 797-807.
    • (1999) Plant Mol Biol , vol.39 , pp. 797-807
    • Garber, K.1    Bilic, I.2    Pusch, O.3
  • 13
    • 71449104223 scopus 로고    scopus 로고
    • Unstable transmission of rice chromosomes without functional centromeric repeats in asexual propagation
    • Gong Z, Yu H, Huang J, Yi C, Gu M (2009) Unstable transmission of rice chromosomes without functional centromeric repeats in asexual propagation. Chromosome Res 17: 863-872.
    • (2009) Chromosome Res , vol.17 , pp. 863-872
    • Gong, Z.1    Yu, H.2    Huang, J.3    Yi, C.4    Gu, M.5
  • 14
    • 0002051540 scopus 로고    scopus 로고
    • Bioedit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT
    • Hall TA (1999) Bioedit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 15
    • 34547437302 scopus 로고    scopus 로고
    • Plant highly repeated satellite DNA: molecular evolution, distribution and use for identification of hybrids
    • Hemleben V, Kovarik A, Torres-Ruiz RA, Volkov RA, Beridze T (2007) Plant highly repeated satellite DNA: molecular evolution, distribution and use for identification of hybrids. System Biodivers 5: 277-289.
    • (2007) System Biodivers , vol.5 , pp. 277-289
    • Hemleben, V.1    Kovarik, A.2    Torres-Ruiz, R.A.3    Volkov, R.A.4    Beridze, T.5
  • 17
    • 0347297331 scopus 로고    scopus 로고
    • Chromosome identification and comparative karyotypic analyses of four Pinus species
    • Hizume M, Shibata F, Matsusaki Y, Garajova Z (2002) Chromosome identification and comparative karyotypic analyses of four Pinus species. Theor Appl Genet 105: 491-497.
    • (2002) Theor Appl Genet , vol.105 , pp. 491-497
    • Hizume, M.1    Shibata, F.2    Matsusaki, Y.3    Garajova, Z.4
  • 18
    • 77956609657 scopus 로고    scopus 로고
    • Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing
    • Hřibová E, Neumann P, Matsumoto T, Roux N, Macas J, Doležel J (2010) Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing. BMC Plant Bio 10: 204.
    • (2010) BMC Plant Bio , vol.10 , pp. 204
    • Hřibová, E.1    Neumann, P.2    Matsumoto, T.3    Roux, N.4    Macas, J.5    Doležel, J.6
  • 19
    • 0020024303 scopus 로고
    • Repetitive sequences in eukaryotic DNA and their expression
    • Jelinek WR, Schmid CW (1982) Repetitive sequences in eukaryotic DNA and their expression. Annu Rev Biochem 51: 813-844.
    • (1982) Annu Rev Biochem , vol.51 , pp. 813-844
    • Jelinek, W.R.1    Schmid, C.W.2
  • 20
    • 0028872686 scopus 로고
    • Identification of presumed ancestral DNA sequences of phaseolin in Phaseolus vulgaris
    • Kami J, Velásquez VB, Debouck DG, Gepts P (1995) Identification of presumed ancestral DNA sequences of phaseolin in Phaseolus vulgaris. Proc Nat Acad Sci 92: 1101-1104.
    • (1995) Proc Nat Acad Sci , vol.92 , pp. 1101-1104
    • Kami, J.1    Velásquez, V.B.2    Debouck, D.G.3    Gepts, P.4
  • 21
    • 33645418720 scopus 로고    scopus 로고
    • Development of four phylogenetically arrayed BAC libraries and sequence of the APA locus in Phaseolus vulgaris
    • Kami J, Poncet V, Geffroy V, Gepts P (2006) Development of four phylogenetically arrayed BAC libraries and sequence of the APA locus in Phaseolus vulgaris. Theor Appl Genet 112: 987-998.
    • (2006) Theor Appl Genet , vol.112 , pp. 987-998
    • Kami, J.1    Poncet, V.2    Geffroy, V.3    Gepts, P.4
  • 22
    • 4544245758 scopus 로고    scopus 로고
    • Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize
    • Kato A, Lamb JC, Birchler JA (2004) Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize. Proc Nat Acad Sci 101: 13554-13559.
    • (2004) Proc Nat Acad Sci , vol.101 , pp. 13554-13559
    • Kato, A.1    Lamb, J.C.2    Birchler, J.A.3
  • 23
    • 0030979370 scopus 로고    scopus 로고
    • The close relationship between the A and B genomes in Avena L. (Poaceae) determined by molecular cytogenetic analysis of total genomic, tandemly and dispersed repetitive DNA sequences
    • Katsiotis A, Hagidimitriou M, Heslop-Harrison JS (1997) The close relationship between the A and B genomes in Avena L. (Poaceae) determined by molecular cytogenetic analysis of total genomic, tandemly and dispersed repetitive DNA sequences. Ann Bot 79: 103-109.
    • (1997) Ann Bot , vol.79 , pp. 103-109
    • Katsiotis, A.1    Hagidimitriou, M.2    Heslop-Harrison, J.S.3
  • 24
    • 0031873834 scopus 로고    scopus 로고
    • Cloning, quantification and characterization of a minisatellite DNA sequence from common bean (Phaseolus vulgaris L.)
    • Métais I, Aubry C, Hamon C, Peltier D, Jalouzot R (1998) Cloning, quantification and characterization of a minisatellite DNA sequence from common bean (Phaseolus vulgaris L.). Theor Appl Genet 97: 232-237.
    • (1998) Theor Appl Genet , vol.97 , pp. 232-237
    • Métais, I.1    Aubry, C.2    Hamon, C.3    Peltier, D.4    Jalouzot, R.5
  • 25
    • 0037355216 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation reveals that the 180 bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres
    • Nagaki K, Talbert PB, Zhong CX, Dawe RK, Henikoff S, Jiang J (2003) Chromatin immunoprecipitation reveals that the 180 bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres. Genetics 163: 1221-1225.
    • (2003) Genetics , vol.163 , pp. 1221-1225
    • Nagaki, K.1    Talbert, P.B.2    Zhong, C.X.3    Dawe, R.K.4    Henikoff, S.5    Jiang, J.6
  • 26
    • 0042423488 scopus 로고    scopus 로고
    • Karyotype analysis of four Vicia species using in situ hybridization with repetitive sequences
    • Navrátilová A, Neumann P, Macas J (2003) Karyotype analysis of four Vicia species using in situ hybridization with repetitive sequences. Ann Bot 91: 921-926.
    • (2003) Ann Bot , vol.91 , pp. 921-926
    • Navrátilová, A.1    Neumann, P.2    Macas, J.3
  • 27
    • 84855188031 scopus 로고    scopus 로고
    • Plant centromeric retrotransposons: a structural and cytogenetic perspective
    • Neumann P, Navrátilová A, Koblíźková A et al (2011) Plant centromeric retrotransposons: a structural and cytogenetic perspective. Mobile DNA 2: 4.
    • (2011) Mobile DNA , vol.2 , pp. 4
    • Neumann, P.1    Navrátilová, A.2    Koblíźková, A.3
  • 29
    • 67349135213 scopus 로고    scopus 로고
    • Cytogenetic mapping of common bean chromosomes reveals a less compartmentalized small-genome plant species
    • Pedrosa-Harand A, Kami J, Gepts P, Geffroy V, Schweizer D (2009) Cytogenetic mapping of common bean chromosomes reveals a less compartmentalized small-genome plant species. Chromosome Res 17: 405-417.
    • (2009) Chromosome Res , vol.17 , pp. 405-417
    • Pedrosa-Harand, A.1    Kami, J.2    Gepts, P.3    Geffroy, V.4    Schweizer, D.5
  • 30
    • 0033990048 scopus 로고    scopus 로고
    • Primer 3 on the WWW for general users and for biologist programmers
    • S. Krawetz and S. Misener (Eds.), Totowa: Humana Press
    • Rozen S, Skaletsky HL (2000) Primer 3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, pp 365-386.
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.L.2
  • 31
    • 62649158678 scopus 로고    scopus 로고
    • BAC-end sequence analysis and draft physical map of the common bean (Phaseolus vulgaris L.) genome
    • Schlueter JA, Goicoechea JL, Collura K et al (2008) BAC-end sequence analysis and draft physical map of the common bean (Phaseolus vulgaris L.) genome. Trop Plant Biol 1: 40-48.
    • (2008) Trop Plant Biol , vol.1 , pp. 40-48
    • Schlueter, J.A.1    Goicoechea, J.L.2    Collura, K.3
  • 32
    • 0344859057 scopus 로고
    • Plant repetitive DNA elements and chromosome structure
    • Schweizer D, Strehl S, Hagemann S (1990) Plant repetitive DNA elements and chromosome structure. Chromosome Today 10: 33-43.
    • (1990) Chromosome Today , vol.10 , pp. 33-43
    • Schweizer, D.1    Strehl, S.2    Hagemann, S.3
  • 33
    • 16344369963 scopus 로고    scopus 로고
    • Organization and evolution of highly repeated satellite DNA sequences in plant chromosomes
    • Sharma S, Raina RN (2005) Organization and evolution of highly repeated satellite DNA sequences in plant chromosomes. Cytogenet Gen Res 109: 15-26.
    • (2005) Cytogenet Gen Res , vol.109 , pp. 15-26
    • Sharma, S.1    Raina, R.N.2
  • 34
    • 23344435904 scopus 로고    scopus 로고
    • Sobo, a recently amplified satellite repeat of potato, and its implications for the origin of tandemly repeated sequences
    • Tek AL, Song J, Macas J, Jiang J (2005) Sobo, a recently amplified satellite repeat of potato, and its implications for the origin of tandemly repeated sequences. Genetics 170: 1231-1238.
    • (2005) Genetics , vol.170 , pp. 1231-1238
    • Tek, A.L.1    Song, J.2    Macas, J.3    Jiang, J.4
  • 35
    • 0037112912 scopus 로고    scopus 로고
    • Variation in satellite DNA profiles-causes and effects
    • Ugarković D{stroke}, Plohl M (2002) Variation in satellite DNA profiles-causes and effects. EMBO J 21: 5955-5959.
    • (2002) EMBO J , vol.21 , pp. 5955-5959
    • Ugarković, D.1    Plohl, M.2
  • 36
    • 34250862091 scopus 로고    scopus 로고
    • Ku suppresses formation of telomeric circles and alternative telomere lengthening in Arabidopsis
    • Zellinger B, Akimcheva S, Puizina J, Schirato M, Riha K (2007) Ku suppresses formation of telomeric circles and alternative telomere lengthening in Arabidopsis. Mol Cell 27: 163-169.
    • (2007) Mol Cell , vol.27 , pp. 163-169
    • Zellinger, B.1    Akimcheva, S.2    Puizina, J.3    Schirato, M.4    Riha, K.5


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