메뉴 건너뛰기




Volumn 25, Issue 11, 2011, Pages 1033-1051

Improving molecular docking through eHiTS' tunable scoring function

Author keywords

Binding affinity; Docking; eHiTS; Score tuning; Scoring function; Screening

Indexed keywords

FORECASTING; MOLECULAR MODELING;

EID: 84855187626     PISSN: 0920654X     EISSN: 15734951     Source Type: Journal    
DOI: 10.1007/s10822-011-9482-5     Document Type: Article
Times cited : (19)

References (49)
  • 1
    • 67650077384 scopus 로고    scopus 로고
    • Docking ligands into flexible and solvated macromolecules. 4. Are popular scoring functions accurate for this class of proteins?
    • 10.1021/ci8004308 1:CAS:528:DC%2BD1MXlvFCku7w%3D
    • P Englebienne N Moitessier 2009 Docking ligands into flexible and solvated macromolecules. 4. Are popular scoring functions accurate for this class of proteins? J Chem Inf Model 49 1568 1580 10.1021/ci8004308 1:CAS:528:DC%2BD1MXlvFCku7w%3D
    • (2009) J Chem Inf Model , vol.49 , pp. 1568-1580
    • Englebienne, P.1    Moitessier, N.2
  • 2
    • 10044294023 scopus 로고    scopus 로고
    • An extensive test of 14 scoring functions using the PDBbind refined set of 800
    • 10.1021/ci049733j 1:CAS:528:DC%2BD2cXovVGqtLs%3D
    • R Wang Y Lu X Fang S Wang 2004 An extensive test of 14 scoring functions using the PDBbind refined set of 800 J Chem Inf Comput Sci 44 2114 2125 10.1021/ci049733j 1:CAS:528:DC%2BD2cXovVGqtLs%3D
    • (2004) J Chem Inf Comput Sci , vol.44 , pp. 2114-2125
    • Wang, R.1    Lu, Y.2    Fang, X.3    Wang, S.4
  • 5
    • 0035966871 scopus 로고    scopus 로고
    • Detailed analysis of scoring functions for virtual screening
    • DOI 10.1021/jm0003992
    • M Stahl M Rarey 2001 Detailed analysis of scoring functions for virtual screening J Med Chem 44 1035 1042 10.1021/jm0003992 1:CAS:528: DC%2BD3MXhsFKitro%3D (Pubitemid 32852130)
    • (2001) Journal of Medicinal Chemistry , vol.44 , Issue.7 , pp. 1035-1042
    • Stahl, M.1    Rarey, M.2
  • 6
    • 0038185582 scopus 로고    scopus 로고
    • Binding site characteristics in structure-based virtual screening: Evaluation of current docking tools
    • DOI 10.1007/S00894-002-0112-Y
    • T Schulz-Gasch M Stahl 2003 Binding site characteristics in structure-based virtual screening: evaluation of current docking tools J Mol Model 9 47 57 1:CAS:528:DC%2BD3sXivFyisbY%3D (Pubitemid 37240092)
    • (2003) Journal of Molecular Modeling , vol.9 , Issue.1 , pp. 47-57
    • Schulz-Gasch, T.1    Stahl, M.2
  • 7
    • 1642540577 scopus 로고    scopus 로고
    • Evaluation of Docking Performance: Comparative Data on Docking Algorithms
    • DOI 10.1021/jm0302997
    • M Kontoyianni LM McClellan GS Sokol 2004 Evaluation of docking performance: comparative data on docking algorithms J Med Chem 47 558 565 10.1021/jm0302997 1:CAS:528:DC%2BD2cXjt1Gk (Pubitemid 38129714)
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.3 , pp. 558-565
    • Kontoyianni, M.1    McClellan, L.M.2    Sokol, G.S.3
  • 8
    • 1942471391 scopus 로고    scopus 로고
    • Assessing scoring functions for protein-ligand interactions
    • DOI 10.1021/jm030489h
    • P Ferrara H Gohlke DJ Price G Klebe CL Brooks III 2004 Assessing scoring functions for protein-ligand interactions J Med Chem 47 3032 3047 10.1021/jm030489h 1:CAS:528:DC%2BD2cXjs1Sjsrk%3D (Pubitemid 38702700)
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.12 , pp. 3032-3047
    • Ferrara, P.1    Gohlke, H.2    Price, D.J.3    Klebe, G.4    Brooks III, C.L.5
  • 9
    • 79251524915 scopus 로고    scopus 로고
    • Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database
    • 10.1002/jcc.21643 1:CAS:528:DC%2BC3MXosVemuw%3D%3D
    • D Plewczynski M Łaźniewski R Augustyniak K Ginalski 2011 Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database J Comput Chem 32 742 755 10.1002/jcc.21643 1:CAS:528: DC%2BC3MXosVemuw%3D%3D
    • (2011) J Comput Chem , vol.32 , pp. 742-755
    • Plewczynski, D.1    Łaźniewski, M.2    Augustyniak, R.3    Ginalski, K.4
  • 10
    • 33244478322 scopus 로고    scopus 로고
    • Comparison of consensus scoring strategies for evaluating computational models of protein-ligand complexes
    • DOI 10.1021/ci050283k
    • A Oda K Tsuchida T Takakura N Yamaotsu S Hirono 2006 Comparison of consensus scoring strategies for evaluating computational models of protein-ligand complexes J Chem Inf Model 46 380 391 10.1021/ci050283k 1:CAS:528:DC%2BD2MXht1Gju7zK (Pubitemid 43282129)
    • (2006) Journal of Chemical Information and Modeling , vol.46 , Issue.1 , pp. 380-391
    • Oda, A.1    Tsuchida, K.2    Takakura, T.3    Yamaotsu, N.4    Hirono, S.5
  • 11
    • 77956760347 scopus 로고    scopus 로고
    • Recent evaluations of high throughput docking methods for pharmaceutical lead finding-consensus and caveats. [ed.] David C. Spellmeyer
    • 10.1016/S1574-1400(06)02016-0 1:CAS:528:DC%2BD1cXjslWqsrs%3D
    • WD Cornell 2006 Recent evaluations of high throughput docking methods for pharmaceutical lead finding-consensus and caveats. [ed.] David C. Spellmeyer Annu Rep Comput Chem 2 297 323 10.1016/S1574-1400(06)02016-0 1:CAS:528:DC%2BD1cXjslWqsrs%3D
    • (2006) Annu Rep Comput Chem , vol.2 , pp. 297-323
    • Cornell, W.D.1
  • 12
    • 33749513370 scopus 로고    scopus 로고
    • Scoring functions for protein-ligand docking
    • DOI 10.2174/138920306778559395
    • AN Jain 2006 Scoring functions for protein-ligand docking J Comput Aided Mol Des 7 407 420 1:CAS:528:DC%2BD28XhtVamsLrE (Pubitemid 44524490)
    • (2006) Current Protein and Peptide Science , vol.7 , Issue.5 , pp. 407-420
    • Jain, A.N.1
  • 13
    • 0033545622 scopus 로고    scopus 로고
    • A general and fast scoring function for protein-ligand interactions: A simplified potential approach
    • DOI 10.1021/jm980536j
    • I Muegge YC Martin 1999 A general and fast scoring function for protein-ligand interactions: a simplified potential approach J Med Chem 42 791 804 10.1021/jm980536j 1:CAS:528:DyaK1MXht1aksrk%3D (Pubitemid 29136170)
    • (1999) Journal of Medicinal Chemistry , vol.42 , Issue.5 , pp. 791-804
    • Muegge, I.1    Martin, Y.C.2
  • 14
    • 0034645763 scopus 로고    scopus 로고
    • Knowledge-based scoring function to predict protein-ligand interactions
    • 10.1006/jmbi.1999.3371
    • H Gohlke M Hendlich G Klebe 1999 Knowledge-based scoring function to predict protein-ligand interactions J Mol Biol 295 337 356 10.1006/jmbi.1999. 3371
    • (1999) J Mol Biol , vol.295 , pp. 337-356
    • Gohlke, H.1    Hendlich, M.2    Klebe, G.3
  • 15
    • 33747706795 scopus 로고    scopus 로고
    • Protein Alpha Shape (PAS) Dock: A new gaussian-based score function suitable for docking in homology modelled protein structures
    • DOI 10.1007/s10822-006-9041-7
    • K Tøndel E Anderssen F Drabløs 2006 Protein Alpha Shape (PAS) Dock: a new gaussian-based score function suitable for docking in homology modelled protein structures J Comput Aided Mol Des 20 131 144 10.1007/s10822-006-9041-7 (Pubitemid 44269784)
    • (2006) Journal of Computer-Aided Molecular Design , vol.20 , Issue.3 , pp. 131-144
    • Tondel, K.1    Anderssen, E.2    Drablos, F.3
  • 16
    • 0031226772 scopus 로고    scopus 로고
    • Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes
    • MD Eldridge CW Murray TR Auton GV Paolini RP Mee 1997 Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes J Comput Aided Mol Des 11 425 445 10.1023/A:1007996124545 1:CAS:528:DyaK2sXnsV2it7o%3D (Pubitemid 127505895)
    • (1997) Journal of Computer-Aided Molecular Design , vol.11 , Issue.5 , pp. 425-445
    • Eldridge, M.D.1    Murray, C.W.2    Auton, T.R.3    Paolini, G.V.4    Mee, R.P.5
  • 17
    • 0036022960 scopus 로고    scopus 로고
    • Further development and validation of empirical scoring functions for structure-based binding affinity prediction
    • DOI 10.1023/A:1016357811882
    • R Wang L Lai S Wang 2002 Further development and validation of empirical scoring functions for structure-based binding affinity prediction J Comput Aided Mol Des 16 11 26 10.1023/A:1016357811882 1:CAS:528:DC%2BD38XltlSqs7k%3D (Pubitemid 34855041)
    • (2002) Journal of Computer-Aided Molecular Design , vol.16 , Issue.1 , pp. 11-26
    • Wang, R.1    Lai, L.2    Wang, S.3
  • 18
    • 1642310340 scopus 로고    scopus 로고
    • Glide: A New Approach for Rapid, Accurate Docking and Scoring. 2. Enrichment Factors in Database Screening
    • DOI 10.1021/jm030644s
    • TA Halgren RB Murphy RA Friesner HS Beard LL Frye WT Pollard JL Banks 2004 Glide: a new approach for rapid, accurate docking and scoring. 2. Enrichment factors in database screening J Med Chem 47 1750 1759 10.1021/jm030644s 1:CAS:528:DC%2BD2cXhsFyit78%3D (Pubitemid 38380918)
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.7 , pp. 1750-1759
    • Halgren, T.A.1    Murphy, R.B.2    Friesner, R.A.3    Beard, H.S.4    Frye, L.L.5    Pollard, W.T.6    Banks, J.L.7
  • 19
    • 0030599010 scopus 로고    scopus 로고
    • A fast flexible docking method using an incremental construction algorithm
    • DOI 10.1006/jmbi.1996.0477
    • M Rarey B Kramer T Langauer G Klebe 1996 A fast flexible docking method using an incremental construction algorithm J Mol Biol 261 470 489 10.1006/jmbi.1996.0477 1:CAS:528:DyaK28XltlKisLo%3D (Pubitemid 26335901)
    • (1996) Journal of Molecular Biology , vol.261 , Issue.3 , pp. 470-489
    • Rarey, M.1    Kramer, B.2    Lengauer, T.3    Klebe, G.4
  • 22
    • 0031552362 scopus 로고    scopus 로고
    • Development and validation of a genetic algorithm for flexible docking
    • DOI 10.1006/jmbi.1996.0897
    • G Jones P Willett RC Glen AR Leach R Taylor 1997 Development and validation of a genetic algorithm for flexible docking J Mol Biol 267 727 748 10.1006/jmbi.1996.0897 1:CAS:528:DyaK2sXis1KntLo%3D (Pubitemid 27170693)
    • (1997) Journal of Molecular Biology , vol.267 , Issue.3 , pp. 727-748
    • Jones, G.1    Willett, P.2    Glen, R.C.3    Leach, A.R.4    Taylor, R.5
  • 23
    • 0025135112 scopus 로고
    • Automated docking of substrates to proteins by simulated annealing
    • DS Goodsell AJ Olson 1990 Automated docking of substrates to proteins by simulated annealing Proteins 8 195 202 10.1002/prot.340080302 1:CAS:528:DyaK3MXhsFKntbg%3D (Pubitemid 20363304)
    • (1990) Proteins: Structure, Function and Genetics , vol.8 , Issue.3 , pp. 195-202
    • Goodsell, D.S.1    Olson, A.J.2
  • 25
    • 84986432941 scopus 로고
    • Automated docking with grid-based energy evaluation
    • 10.1002/jcc.540130412 1:CAS:528:DyaK38Xit1Omt7c%3D
    • EC Meng BK Shoichet ID Kuntz 1992 Automated docking with grid-based energy evaluation J Comp Chem 13 505 524 10.1002/jcc.540130412 1:CAS:528:DyaK38Xit1Omt7c%3D
    • (1992) J Comp Chem , vol.13 , pp. 505-524
    • Meng, E.C.1    Shoichet, B.K.2    Kuntz, I.D.3
  • 26
    • 34250892548 scopus 로고    scopus 로고
    • EHiTS: A new fast, exhaustive flexible ligand docking system
    • DOI 10.1016/j.jmgm.2006.06.002, PII S1093326306000994
    • Z Zsoldos D Reid A Simon SB Sadjad AP Johnson 2007 eHiTS: a new fast, exhaustive flexible ligand docking system J Mol Graph Model 26 198 212 10.1016/j.jmgm.2006.06.002 1:CAS:528:DC%2BD2sXntFygu7s%3D (Pubitemid 46977244)
    • (2007) Journal of Molecular Graphics and Modelling , vol.26 , Issue.1 , pp. 198-212
    • Zsoldos, Z.1    Reid, D.2    Simon, A.3    Sadjad, S.B.4    Johnson, A.P.5
  • 27
    • 33749521613 scopus 로고    scopus 로고
    • EHiTS: An innovative approach to the docking and scoring function problems
    • DOI 10.2174/138920306778559412
    • Z Zsoldos D Reid A Simon SB Sadjad AP Johnson 2006 eHiTS: an innovative approach to the docking and scoring function problems Curr Protein Pept Sci 7 421 435 10.2174/138920306778559412 1:CAS:528:DC%2BD28XhtVamsLrF (Pubitemid 44524491)
    • (2006) Current Protein and Peptide Science , vol.7 , Issue.5 , pp. 421-435
    • Zsoldos, Z.1    Reid, D.2    Simon, A.3    Sadjad, B.S.4    Johnson, A.P.5
  • 28
    • 0034284367 scopus 로고    scopus 로고
    • Similarity-driven flexible ligand docking
    • DOI 10.1002/1097-0134(20000901)40:4<623::AID-PROT70>3.0.CO;2-I
    • X Fradera RMA Knegtel J Mestres 2000 Similarity-driven flexible ligand docking Proteins 40 623 636 10.1002/1097-0134(20000901)40:4<623::AID- PROT70>3.0.CO;2-I 1:CAS:528:DC%2BD3cXmtVWnsbc%3D (Pubitemid 30655893)
    • (2000) Proteins: Structure, Function and Genetics , vol.40 , Issue.4 , pp. 623-636
    • Kaya, H.1    Chan, H.S.2
  • 29
    • 26444468103 scopus 로고    scopus 로고
    • General and targeted statistical potentials for protein-ligand interactions
    • DOI 10.1002/prot.20588
    • WTM Mooij ML Verdonk 2005 General and targetes statistical potentials for protein-ligand interactions Proteins 61 272 287 10.1002/prot.20588 1:CAS:528:DC%2BD2MXhtFSrsbfJ (Pubitemid 41429135)
    • (2005) Proteins: Structure, Function and Genetics , vol.61 , Issue.2 , pp. 272-287
    • Mooij, W.T.M.1    Verdonk, M.L.2
  • 30
    • 79952178127 scopus 로고    scopus 로고
    • A machine learning-based method to improve docking scoring functions and its application to drug repurposing
    • 10.1021/ci100369f 1:CAS:528:DC%2BC3MXhsVSitbs%3D
    • SL Kinnings N Liu PJ Tonge RM Jackson L Xie PE Bourne 2011 A machine learning-based method to improve docking scoring functions and its application to drug repurposing J Chem Inf Model 51 408 419 10.1021/ci100369f 1:CAS:528:DC%2BC3MXhsVSitbs%3D
    • (2011) J Chem Inf Model , vol.51 , pp. 408-419
    • Kinnings, S.L.1    Liu, N.2    Tonge, P.J.3    Jackson, R.M.4    Xie, L.5    Bourne, P.E.6
  • 31
    • 36749002607 scopus 로고    scopus 로고
    • A general approach for developing system-specific functions to score protein-ligand docked complexes using support vector inductive logic programming
    • DOI 10.1002/prot.21782
    • A Amini PJ Shrimpton SH Muggleton MJE Sternberg 2007 A general approach for developing system-specific functions to score protein-ligand docked complexes using support vector inductive logic programming Proteins 69 823 831 10.1002/prot.21782 1:CAS:528:DC%2BD2sXhtl2qsbvP (Pubitemid 350210144)
    • (2007) Proteins: Structure, Function and Genetics , vol.69 , Issue.4 , pp. 823-831
    • Amini, A.1    Shrimpton, P.J.2    Muggleton, S.H.3    Sternberg, M.J.E.4
  • 32
    • 84855191069 scopus 로고    scopus 로고
    • [Online] Radboud University, Nijmegen Medical Centre
    • Vriend G (1996) WHAT-CHECK. [Online] Radboud University, Nijmegen Medical Centre. http://swift.cmbi.ru.nl/gv/whatcheck/. Accessed 27 April 2011
    • (1996) WHAT-CHECK
    • Vriend, G.1
  • 34
    • 25444501243 scopus 로고    scopus 로고
    • Neuraminidase inhibitors for influenza
    • DOI 10.1056/NEJMra050740
    • A Moscona 2005 Neuraminidase inhibitors for influenza N Engl J Med 353 1363 1373 10.1056/NEJMra050740 1:CAS:528:DC%2BD2MXhtVGmtL3L (Pubitemid 41362704)
    • (2005) New England Journal of Medicine , vol.353 , Issue.13 , pp. 1363-1373
    • Moscona, A.1
  • 35
    • 0001008029 scopus 로고
    • An efficient method for finding the minimum of a function of several variables without calculating derivatives
    • 10.1093/comjnl/7.2.155
    • MJD Powell 1964 An efficient method for finding the minimum of a function of several variables without calculating derivatives Comput J 7 155 162 10.1093/comjnl/7.2.155
    • (1964) Comput J , vol.7 , pp. 155-162
    • Powell, M.J.D.1
  • 36
    • 44249094426 scopus 로고    scopus 로고
    • LASSO-ligand activity by surface similarity order: A new tool for ligand based virtual screening
    • 10.1007/s10822-007-9164-5 1:CAS:528:DC%2BD1cXmtVSnt7o%3D
    • D Reid BS Sadjad Z Zsoldos A Simon 2008 LASSO-ligand activity by surface similarity order: a new tool for ligand based virtual screening J Comput Aided Mol Des 22 479 487 10.1007/s10822-007-9164-5 1:CAS:528:DC%2BD1cXmtVSnt7o%3D
    • (2008) J Comput Aided Mol des , vol.22 , pp. 479-487
    • Reid, D.1    Sadjad, B.S.2    Zsoldos, Z.3    Simon, A.4
  • 38
    • 33750991346 scopus 로고    scopus 로고
    • Benchmarking sets for molecular docking
    • DOI 10.1021/jm0608356
    • N Huang BK Shoichet JJ Irwin 2006 Benchmarking sets for molecular docking J Med Chem 49 6789 6801 10.1021/jm0608356 1:CAS:528:DC%2BD28XhtFehurzI (Pubitemid 44749746)
    • (2006) Journal of Medicinal Chemistry , vol.49 , Issue.23 , pp. 6789-6801
    • Huang, N.1    Shoichet, B.K.2    Irwin, J.J.3
  • 39
    • 2542530042 scopus 로고    scopus 로고
    • The PDBbind database: Collection of binding affinities for protein-ligand complexes with known three-dimensional structures
    • DOI 10.1021/jm030580l
    • R Wang X Fang Y Lu S Wang 2004 The PDBbind database: collection of binding affinities for protein-ligand complexes with known three-dimensional structures J Med Chem 47 2977 2980 10.1021/jm030580l 1:CAS:528: DC%2BD2cXjs1Sjs74%3D (Pubitemid 38702694)
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.12 , pp. 2977-2980
    • Wang, R.1    Fang, X.2    Lu, Y.3    Wang, S.4
  • 40
    • 20444422149 scopus 로고    scopus 로고
    • The PDBbind database: Methodologies and updates
    • DOI 10.1021/jm048957q
    • R Wang X Fang Y Lu CY Yang S Wang 2005 The PDBbind database: methodologies and updates J Med Chem 48 4111 4119 10.1021/jm048957q 1:CAS:528:DC%2BD2MXktlKisbg%3D (Pubitemid 40800619)
    • (2005) Journal of Medicinal Chemistry , vol.48 , Issue.12 , pp. 4111-4119
    • Wang, R.1    Fang, X.2    Lu, Y.3    Yang, C.-Y.4    Wang, S.5
  • 41
    • 38349107593 scopus 로고    scopus 로고
    • The Alzheimer's disease β-secretase enzyme, BACE1
    • 10.1186/1750-1326-2-22
    • SL Cole R Vassar 2007 The Alzheimer's disease β-secretase enzyme, BACE1 Mol Neurodegener 2 22 46 10.1186/1750-1326-2-22
    • (2007) Mol Neurodegener , vol.2 , pp. 22-46
    • Cole, S.L.1    Vassar, R.2
  • 42
    • 67650097331 scopus 로고    scopus 로고
    • Comparison of several molecular docking programs: Pose prediction and virtual screening accuracy
    • 10.1021/ci900056c 1:CAS:528:DC%2BD1MXmsVOmt7g%3D
    • JB Cross DC Thompson BK Rai JC Baber K Yi Fan Y Hu C Humblet 2009 Comparison of several molecular docking programs: pose prediction and virtual screening accuracy J Chem Inf Model 49 1455 1474 10.1021/ci900056c 1:CAS:528:DC%2BD1MXmsVOmt7g%3D
    • (2009) J Chem Inf Model , vol.49 , pp. 1455-1474
    • Cross, J.B.1    Thompson, D.C.2    Rai, B.K.3    Baber, J.C.4    Yi Fan, K.5    Hu, Y.6    Humblet, C.7
  • 43
    • 17144385534 scopus 로고    scopus 로고
    • Virtual screening workflow development guided by the "receiver operating characteristic" curve approach. Application to high-throughput docking on metabotropic glutamate receptor subtype 4
    • DOI 10.1021/jm049092j
    • N Triballeau F Acher I Brabet JP Pin HO Bertrand 2005 Virtual screening workflow development guided by the "receiver operating characteristic" curve approach. Application to high-throughput docking on metabotropic glutamate receptor subtype 4 J Med Chem 48 2534 2547 10.1021/jm049092j 1:CAS:528:DC%2BD2MXitVWrtLw%3D (Pubitemid 40520517)
    • (2005) Journal of Medicinal Chemistry , vol.48 , Issue.7 , pp. 2534-2547
    • Triballeau, N.1    Acher, F.2    Brabet, I.3    Pin, J.-P.4    Bertrand, H.-O.5
  • 44
    • 0020083498 scopus 로고
    • The meaning and use of the area under a receiver operating characteristic (ROC) curve
    • JA Hanley BJ McNeil 1982 The meaning and use of the area under a receiver operating characteristic (ROC) curve Radiology 143 29 36 1:STN:280: DyaL387ltFyksQ%3D%3D (Pubitemid 12142173)
    • (1982) Radiology , vol.143 , Issue.1 , pp. 29-36
    • Hanley, J.A.1    McNeil, B.J.2
  • 45
    • 41349093326 scopus 로고    scopus 로고
    • What do we know and when do we know it?
    • 10.1007/s10822-008-9170-2 1:CAS:528:DC%2BD1cXjsFOnsLY%3D
    • A Nicholls 2008 What do we know and when do we know it? J Comput Aided Mol Des 22 239 255 10.1007/s10822-008-9170-2 1:CAS:528:DC%2BD1cXjsFOnsLY%3D
    • (2008) J Comput Aided Mol des , vol.22 , pp. 239-255
    • Nicholls, A.1
  • 46
    • 41349122416 scopus 로고    scopus 로고
    • Optimization of CAMD techniques 3. Virtual screening enrichment studies: A help or hindrance in tool selection?
    • 10.1007/s10822-007-9167-2 1:CAS:528:DC%2BD1cXjsFOnsLo%3D
    • AC Good TI Oprea 2008 Optimization of CAMD techniques 3. Virtual screening enrichment studies: a help or hindrance in tool selection? J Comput Aided Mol Des 22 169 178 10.1007/s10822-007-9167-2 1:CAS:528: DC%2BD1cXjsFOnsLo%3D
    • (2008) J Comput Aided Mol des , vol.22 , pp. 169-178
    • Good, A.C.1    Oprea, T.I.2
  • 47
    • 79952161315 scopus 로고    scopus 로고
    • Virtual decoy sets for molecular docking benchmarks
    • 10.1021/ci100374f 1:CAS:528:DC%2BC3MXoslel
    • I Wallach R Lilien 2011 Virtual decoy sets for molecular docking benchmarks J Chem Inf Model 51 196 202 10.1021/ci100374f 1:CAS:528: DC%2BC3MXoslel
    • (2011) J Chem Inf Model , vol.51 , pp. 196-202
    • Wallach, I.1    Lilien, R.2
  • 49
    • 49449105293 scopus 로고    scopus 로고
    • AIScore-chemically diverse empirical scoring function employing quantum chemical binding energies of hydrogen-bonded complexes
    • 10.1021/ci7004669 1:CAS:528:DC%2BD1cXnvF2gurk%3D
    • S Raub A Steffen A Kamper CM Marian 2008 AIScore-chemically diverse empirical scoring function employing quantum chemical binding energies of hydrogen-bonded complexes J Chem Inf Model 48 1492 1510 10.1021/ci7004669 1:CAS:528:DC%2BD1cXnvF2gurk%3D
    • (2008) J Chem Inf Model , vol.48 , pp. 1492-1510
    • Raub, S.1    Steffen, A.2    Kamper, A.3    Marian, C.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.