Comparison of DNA extraction protocols for Mycobacterium Tuberculosis in diagnosis of tuberculous meningitis by real-time polymerase chain reaction

Journal of Global Infectious Diseases

Volumn 3, Issue 4, 2011, Pages 353-356

  Thakur, Rajeev ^a   Sarma, Smita ^a   Goyal, Renu ^a  

^a INSTITUTE OF HUMAN BEHAVIOUR AND ALLIED SCIENCES   (India)

Author keywords

Extraction; Real time PCR; Tubercular meningitis

Indexed keywords

BACTERIAL DNA;

ARTICLE; BACTERIUM DETECTION; CEREBROSPINAL FLUID ANALYSIS; CLINICAL EFFECTIVENESS; CONTROLLED STUDY; DNA DETERMINATION; DNA EXTRACTION; DNA PROBE; DNA PURIFICATION; INTERMETHOD COMPARISON; LIMIT OF DETECTION; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; NUCLEIC ACID AMPLIFICATION; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; SENSITIVITY ANALYSIS; TUBERCULOUS MENINGITIS;

EID: 84855171367     PISSN: 0974777X     EISSN: 09748245     Source Type: Journal    
DOI: 10.4103/0974-777X.91057     Document Type: Article

References (14)

1. Katti MK. Pathogenesis, diagnosis, treatment, and outcome aspects of cerebral tuberculosis. Med Sci Monit 2004;10:RA215-29. (Pubitemid 39278573)
2. Bhigjee AI, Padayachee R, Paruk H, Hallwirth-Pillay KD, Marais S, Connoly C. Diagnosis of tuberculous meningitis: Clinical and laboratory parameters. Int J Infect Dis 2007;11:348-54. (Pubitemid 46990974)
3. Negi SS, Khan SF, Gupta S, Pasha ST, Khare S, Lal S. Comparison of the conventional diagnostic modalities, bactec culture and polymerase chain reaction test for diagnosis of tuberculosis. Indian J Med Microbiol 2005;23:29-33. (Pubitemid 40347430)
4. Desai D, Nataraj G, Kulkarni S, Bichile L, Mehta P, Baveja S, et al. Utility of the polymerase chain reaction in the diagnosis of tuberculous meningitis. Res Microbiol 2006;157:967-70. (Pubitemid 44828461)
5. Johansen IS, Lundgren B, Tabak F, Petrini B, Hosoglu S, Saltoglu N, et al. Improved sensitivity of nucleic acid amplification for rapid diagnosis of tuberculous meningitis. J Clin Microbiol 2004;42:3036-40. (Pubitemid 38938054)
6. Rock RB, Olin M, Baker CA, Molitor TW, Peterson PK. Central nervous system tuberculosis: Pathogenesis and clinical aspects. Clin Microbiol Rev 2008;21:243-61. (Pubitemid 351555506)
7. Pai M, Flores LL, Pai N, Hubbard A, Riley LW, Colford JM Jr. Diagnostic accuracy of nucleic acid amplification tests for tuberculous meningitis: A systematic review and meta-analysis. Lancet Infect Dis 2003;3:633-43. (Pubitemid 37210227)
8. Espy MJ, Uhl JR, Sloan LM, Buckwalter SP, Jones MF, Vetter EA, et al. Real time PCR in clinical Microbiology: Applications for routine laboratory testing. Clin Microbiol Rev 2006;19:165-256. (Pubitemid 43158452)
9. Buck GE, O'Hara LC, Summersgill JT. Rapid, simple method for treating clinical specimens containing Mycobacterium tuberculosis to remove DNA for polymerase chain reaction. J Clin Microbiol 1992;30:1331-4.
10. Aldous WK, Pounder JI, Cloud JL, Woods GL. Comparison of six methods of extracting Mycobacterium tuberculosis DNA from processed sputum for testing by quantitative real-time PCR. J Clin Microbiol 2005;43:2471-3. (Pubitemid 40656270)
11. Bonington A, Strang JI, Klapper PE, Hood SV, Rubombora W, Penny M, et al. Use of Roche AMPLICOR Mycobacterium tuberculosis PCR in early diagnosis of tuberculous meningitis. J Clin Microbiol 1998;36:1251-4. (Pubitemid 28208008)
12. Thwaites GE, Caws MT, Chau TT, Dung NT, Campbell JI, Phu NH, et al. Comparison of conventional bacteriology with nucleic acid amplification (amplified mycobacterium direct test) for diagnosis of tuberculous meningitis before and after inception of antituberculosis chemotherapy. J Clin Microbiol 2004;42:996-1002. (Pubitemid 38332816)
13. Jain A, Tiwari V, Guleria RS, Verma RK. Qualitative evaluation of Mycobacterial DNA extraction protocols for polymerase chain reaction. Mol Biol Today 2002;3:43-50.
14. Banavaliker JN, Bhalotra B, Sharma DC, Goel MK, Khandekar PS, Bose M. Identification of Mycobacterium tuberculosis by polymerase chain reaction in clinical specimens. Indian J Tuberc 1998;45:15-8. (Pubitemid 128087443)