메뉴 건너뛰기




Volumn 802, Issue , 2012, Pages 101-112

Using the bioconductor geneanswers package to interpret gene lists

Author keywords

Bioconductor; Disease ontology; Gene ontology; GeneAnswers; Network; Pathway analysis

Indexed keywords

ALGORITHM; ARTICLE; CLUSTER ANALYSIS; COMPUTER PROGRAM; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENE REGULATORY NETWORK; GENETICS; HUMAN; INTERNET; METHODOLOGY; MULTIPLE MYELOMA; TUMOR CELL LINE;

EID: 84555188294     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-400-1_7     Document Type: Article
Times cited : (24)

References (19)
  • 2
    • 57749195712 scopus 로고    scopus 로고
    • RNASeq: A revolutionary tool for transcriptomics
    • Wang Z, Gerstein M, Snyder M (2009) RNASeq: a revolutionary tool for transcriptomics. Nat Rev Genet 10:57-63.
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 3
    • 33747885673 scopus 로고    scopus 로고
    • Bioconductor: An open source framework for bioinformatics and computational biology
    • DOI 10.1016/S0076-6879(06)11008-3, PII S0076687906110083, DNA Microarrays, Part B: Databases and Statistics
    • Reimers M, Carey VJ (2006) Bioconductor: an open source framework for bioinformatics and computational biology. Methods Enzymol. 411:119-134. (Pubitemid 44291424)
    • (2006) Methods in Enzymology , vol.411 , pp. 119-134
    • Reimers, M.1    Carey, V.J.2
  • 4
    • 79951480123 scopus 로고    scopus 로고
    • R Development Core Team Vienna, Austria: R Foundation for Statistical Computing
    • R Development Core Team (2010) R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing.
    • (2010) R: A Language and Environment for Statistical Computing
  • 5
    • 84860884140 scopus 로고    scopus 로고
    • http://www.r-project.org.
  • 6
    • 84860884141 scopus 로고    scopus 로고
    • http://www.bioconductor.org.
  • 7
    • 77949533751 scopus 로고    scopus 로고
    • A collection of Bioconductor methods to visualize gene-list annotations
    • Feng G, Du P, Krett NL et al (2010) A collection of Bioconductor methods to visualize gene-list annotations. BMC Res Notes 3:10.
    • (2010) BMC Res Notes , vol.3 , pp. 10
    • Feng, G.1    Du, P.2    Krett, N.L.3
  • 9
    • 0038005018 scopus 로고    scopus 로고
    • DAVID: Database for annotation, visualization, and integrated discovery
    • Dennis G Jr, Sherman BT, Hosack DA et al (2003) DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol. 4:P3.
    • (2003) Genome Biol. , vol.4
    • Dennis Jr., G.1    Sherman, B.T.2    Hosack, D.A.3
  • 10
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 4:44-57.
    • (2009) Nat Protoc. , vol.4 , pp. 44-57
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 11
    • 66349110163 scopus 로고    scopus 로고
    • Annotating the human genome with Disease Ontology
    • Osborne JD, Flatow J, Holko M et al (2009) Annotating the human genome with Disease Ontology. BMC Genomics 10:S6.
    • (2009) BMC Genomics , vol.10
    • Osborne, J.D.1    Flatow, J.2    Holko, M.3
  • 12
    • 34547662415 scopus 로고    scopus 로고
    • Interpreting microarray results with Gene Ontology and MeSH
    • Osborne JD, Zhu LJ, Lin SM et al (2007) Interpreting microarray results with Gene Ontology and MeSH. Methods Mol Biol. 377:223-242.
    • (2007) Methods Mol Biol. , vol.377 , pp. 223-242
    • Osborne, J.D.1    Zhu, L.J.2    Lin, S.M.3
  • 14
    • 84860886844 scopus 로고    scopus 로고
    • http://david.abcc.ncifcrf.gov/conversion.jsp.
  • 15
    • 66349132579 scopus 로고    scopus 로고
    • From Disease Ontology to Disease-Ontology Lite: Statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations
    • Du P, Feng G, Flatow J et al (2009) From Disease Ontology to Disease-Ontology Lite: Statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations. Bioinformatics 25:i63-i68.
    • (2009) Bioinformatics , vol.25
    • Du, P.1    Feng, G.2    Flatow, J.3
  • 16
    • 84860886843 scopus 로고    scopus 로고
    • http://fundo.nubic.northwestern.edu.
  • 17
    • 84860883036 scopus 로고    scopus 로고
    • http://david.abcc.ncifcrf.gov/home.jsp.
  • 18
    • 84860884196 scopus 로고    scopus 로고
    • http://www.ingenuity.com
  • 19
    • 84860886842 scopus 로고    scopus 로고
    • http://www.genego.com/metacore


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.