Resurrexit, sicut dixit, alleluia. Snake venomics from a 26-year old polyacrylamide focusing gel

Journal of Proteomics

Volumn 75, Issue 3, 2012, Pages 1074-1078

  Righetti, Pier Giorgio ^a   Lomonte, Bruno ^b   Calvete, Juan J ^c  

^a POLITECNICO DI MILANO   (Italy)

^b UNIVERSIDAD DE COSTA RICA   (Costa Rica)

^c INSTITUTO DE BIOMEDICINA DE VALENCIA   (Spain)

Author keywords

Dried polyacrylamide gels; Immobilized pH gradients; Mass spectrometry; Protein recovery; Snake venomics

Indexed keywords

ACETONITRILE; AMINO ACID; POLYACRYLAMIDE GEL; SNAKE VENOM;

ARTICLE; CROTALUS ATROX; CROTALUS MOLOSSUS; MASS SPECTROMETRY; PH; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DEGRADATION; ROOM TEMPERATURE; SNAKE; STORAGE;

ANIMALS; COMET ASSAY; CROTALID VENOMS; CROTALUS; MASS SPECTROMETRY; PROTEOMICS; SPECIES SPECIFICITY; TIME FACTORS;

CROTALUS ATROX; CROTALUS MOLOSSUS; CROTALUS MOLOSSUS MOLOSSUS;

EID: 84355162133     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2011.09.021     Document Type: Article

References (30)

1. Mitchell P. Proteomics retrenches. Nature Biotechnol 2010, 28:665-670.
2. Poste G. Bring on the biomarkers. Nature 2011, 469:156-157.
3. Buchen L. Missing the mark. Nature 2011, 471:428-432.
4. Palmer-Toy D.E., Krastins B., Sarracino D.A., Nadol J.B., Merchant S.N. Efficient method for the proteomic analysis of fixed and embedded tissues. J Proteome Res 2005, 4:2404-2411.
5. Sprung R.W., Brock J.W., Tanksley J.P., Li M., Washington M.K., Slebos R.J., et al. Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis. Mol Cell Proteomics 2009, 8:1988-1998.
6. Fowler C.B., Cunningham R.E., O'Leary T.J., Mason J.T. 'Tissue surrogates' as a model for archival formalin-fixed paraffin-embedded tissues. Lab Invest 2007, 87:836-846.
7. Nirmalan N.J., Harnden P., Selby P.J., Banks R.E. Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting. J Pathol 2009, 217:497-506.
8. Addis M.F., Tanca A., Pagnozzi D., Crobu S., Fanciulli G., Cossu-Rocca P., et al. Generation of high-quality protein extracts from formalin-fixed, paraffin-embedded tissues. Proteomics 2009, 9:3815-3823.
9. Addis M.F., Tanca A., Pagnozzi D., Rocca S., Uzzau S. 2-D PAGE and MS analysis of proteins from formalin-fixed, paraffin-embedded tissues. Proteomics 2009, 9:4329-4339.
10. Azimzadeh O., Barjaktarovic Z., Aubele M., Calzada-Wack J., Sarioglu H., Atkinson M.J., et al. Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gel-based proteomics. J Proteome Res 2010, 9:4710-4720.
11. Donadio E., Giusti L., Cetani F., Da Valle Y., Ciregia F., Giannaccini G., et al. Evaluation of formalin-fixed paraffin-embedded tissues in the proteomic analysis of parathyroid glands. Proteome Sci 2011, 9:29-39.
12. Righetti P.G. Immobilized pH gradients: theory and methodology 1990, 1-397. Elsevier, Amsterdam.
13. Gregory-Dwyer V.M., Egen N.B., Bianchi-Bosisio A., Righetti P.G., Russell F.E. An isoelectric focusing study of seasonal variation in rattlesnake venom proteins. Toxicon 1986, 24:995-1000.
14. Calvete J.J., Juárez P., Sanz L. Snake venomics. Strategy and applications. J Mass Spectrom 2007, 42:1405-1414.
15. Fox J.W., Serrano S.M.T. Exploring snake venom proteomes: multifaceted analyses for complex toxin mixtures. Proteomics 2008, 8:909-920.
16. Georgieva D., Arni R.K., Betzel C. Proteome analysis of snake venom toxins: pharmacological insights. Expert Rev Proteomics 2008, 5:787-797.
17. Calvete J.J., Sanz L., Angulo Y., Lomonte B., Gutiérrez J.M. Venoms, venomics, antivenomics. FEBS Lett 2009, 583:1736-1743.
18. Junqueira de Azevedo I.L.M., Diniz M.R.V., Ho P.L. Venom gland transcriptomic analysis. Perspectives in health and biotechnology 2009, 693-713. Editora UFMG, Belo Horizonte, Brazil. M.E. De Lima, A.M.C. Pimenta, M.F. Martin-Euclaire, R.B. Zingali, H. Rochat (Eds.).
19. Durban J., Juárez P., Angulo Y., Lomonte B., Flores-Diaz M., Alape-Girón A., et al. Profiling venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing. BMC Genomics 2011, 12:259.
20. Mass spectrometry in toxinology: a 21st-century technology for the study of biopolymers from venoms. Toxicon 2006, 47:609-726.
21. Matsumoto H., Komori N. Protein identification on two-dimensional gels archived nearly two decades ago by in-gel digestion and matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Anal Biochem 1999, 270:176-179.
22. Shevchenko A., Loboda A., Ens W., Schraven B., Standing K.G., Shevchenko A. Archived polyacrylamide gels as a resource for proteome characterization by mass spectrometry. Electrophoresis 2001, 22:1194-1203.
23. Görg A., Postel R., Westermeier E., Gianazza E., Righetti P.G. Gel gradient electrophoresis, isoelectric focusing and two-dimensional techniques in horizontal, ultrathin, polyacrylamide layers. J Biochem Biophys Methods 1980, 3:273-284.
24. Radola B.J., Kinzkofer A., Frey M. Ultrathin layer isoelectric focusing in 20-50 μm polyacrylamide gels: comparison of conventional and miniature systems. Electrophoresis '81 1981, 181-190. de Gruyter, Berlin. R.C. Allen, P. Arnaud (Eds.).
25. Antonioli P., Zapparoli G., Abbruscato P., Sorlini C., Ranalli G., Righetti P.G. Art-loving bugs: the resurrection of Spinello Aretino from Pisa's cemetery. Proteomics 2005, 5:2453-2459.
26. Fry B.G., Roelants K., Champagne D.E., Scheib H., Tyndall J.D.A., King G.F., et al. The toxicogenomic multiverse: convergent recruitment of proteins into animal venoms. Annu Rev Genomics Hum Genet 2009, 10:483-511.
27. Calvete J.J. Venomics: digging into the evolution of venomous systems and learning to twist nature to fight pathology. J Proteomics 2009, 72:121-126.
28. Animal toxins: state of the art. Perspectives in health and biotechnology 2009, Editora UFMG, Belo Horizonte. M.E. De Lima, A.M.C. Pimenta, M.F. Martin-Euclaire, R.B. Zingali, H. Rochat (Eds.).
29. Escoubas P., King G.F. Venomics as a drug discovery platform. Expert Rev Proteomics 2009, 6:221-224.
30. Vetter I., Davis J.L., Rash L.D., Anangi R., Mobli M., Alewood P.F., et al. Venomics: a new paradigm for natural products-based drug discovery. Amino Acids 2011, 40:15-28.