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Volumn 6, Issue 1, 2012, Pages 136-145

The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions

Author keywords

arbuscular mycorrhizal fungi; bacterial genome; differential gene expression; endobacterium; metabolic profiling; symbiosis

Indexed keywords

VIRULENCE FACTOR;

EID: 84355161747     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2011.110     Document Type: Article
Times cited : (133)

References (47)
  • 1
    • 0036842986 scopus 로고    scopus 로고
    • Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia
    • DOI 10.1038/ng986
    • Akman L, Yamashita A, Watanabe H, Oshima K, Shiba T, Hattori M et al. (2002). Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia. Nat Genet 32: 402-407. (Pubitemid 35266115)
    • (2002) Nature Genetics , vol.32 , Issue.3 , pp. 402-407
    • Akman, L.1    Yamashita, A.2    Watanabe, H.3    Oshima, K.4    Shiba, T.5    Hattori, M.6    Aksoy, S.7
  • 2
    • 61349194453 scopus 로고    scopus 로고
    • The ftsZ gene of the endocellular bacterium 'Candidatus Glomeribacter gigasporarum' is preferentially expressed during the symbiotic phases of its host mycorrhizal fungus
    • Anca IA, Lumini E, Ghignone S, Salvioli A, Bianciotto V, Bonfante P. (2009). The ftsZ gene of the endocellular bacterium 'Candidatus Glomeribacter gigasporarum' is preferentially expressed during the symbiotic phases of its host mycorrhizal fungus. Mol Plant Microbe Interact 22: 302-310.
    • (2009) Mol Plant Microbe Interact , vol.22 , pp. 302-310
    • Anca, I.A.1    Lumini, E.2    Ghignone, S.3    Salvioli, A.4    Bianciotto, V.5    Bonfante, P.6
  • 4
    • 2942525128 scopus 로고    scopus 로고
    • Vertical transmission of endobacteria in the arbuscular mycorrhizal fungus Gigaspora margarita through generation of vegetative spores
    • DOI 10.1128/AEM.70.6.3600-3608.2004
    • Bianciotto V, Genre A, Jargeat P, Lumini E, Becard G, Bonfante P. (2004). Vertical transmission of endobacteria in the arbuscular mycorrhizal fungus Gigaspora margarita through generation of vegetative spores. Appl Environ Microbiol 70: 3600-3608. (Pubitemid 38745909)
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.6 , pp. 3600-3608
    • Bianciotto, V.1    Genre, A.2    Jargeat, P.3    Lumini, E.4    Becard, G.5    Bonfante, P.6
  • 6
    • 70349551729 scopus 로고    scopus 로고
    • Plants, mycorrhizal fungi, and bacteria: A network of interactions
    • Bonfante P, Anca IA. (2009). Plants, mycorrhizal fungi, and bacteria: a network of interactions. Annu Rev Microbiol 63: 363-383.
    • (2009) Annu Rev Microbiol , vol.63 , pp. 363-383
    • Bonfante, P.1    Anca, I.A.2
  • 7
    • 0028055776 scopus 로고
    • Storage and secretion processes in the spore of Gigaspora margarita Becker & Hall as revealed by high-pressure freezing and freeze substitution
    • Bonfante P, Balestrini R, Mendgen K. (1994). Storage and secretion processes in the spore of Gigaspora margarita Becker and Hall as revealed by high-pressure freezing and freeze-substitution. New Phytol 128: 93-101. (Pubitemid 2144912)
    • (1994) New Phytologist , vol.128 , Issue.1 , pp. 93-101
    • Bonfante, P.1    Balestrini, R.2    Mendgen, K.3
  • 9
    • 50649104235 scopus 로고    scopus 로고
    • Characterization of an amino acid permease from the endomycorrhizal fungus Glomus mosseae
    • DOI 10.1104/pp.108.117820
    • Cappellazzo G, Lanfranco L, Fitz M, Wipf D, Bonfante P. (2008). Characterization of an amino acid permease from the endomycorrhizal fungus Glomus mosseae. Plant Physiol 147: 429-437. (Pubitemid 352844369)
    • (2008) Plant Physiology , vol.147 , Issue.1 , pp. 429-437
    • Cappellazzo, G.1    Lanfranco, L.2    Fitz, M.3    Wipf, D.4    Bonfante, P.5
  • 10
    • 75549090505 scopus 로고    scopus 로고
    • The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
    • Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F et al. (2010). The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res 38: D473-D479.
    • (2010) Nucleic Acids Res , vol.38
    • Caspi, R.1    Altman, T.2    Dale, J.M.3    Dreher, K.4    Fulcher, C.A.5    Gilham, F.6
  • 11
    • 77249166548 scopus 로고    scopus 로고
    • Molecular evolution in bacterial endosymbionts of fungi
    • Castillo DM, Pawlowska TE. (2010). Molecular evolution in bacterial endosymbionts of fungi. Mol Biol Evol 27: 622-636.
    • (2010) Mol Biol Evol , vol.27 , pp. 622-636
    • Castillo, D.M.1    Pawlowska, T.E.2
  • 12
    • 27744591716 scopus 로고    scopus 로고
    • 12 through a symbiotic relationship with bacteria
    • DOI 10.1038/nature04056, PII N04056
    • Croft MT, Lawrence AD, Raux-Deery E, Warren MJ, Smith AG. (2005). Algae acquire vitamin B-12 through a symbiotic relationship with bacteria. Nature 438: 90-93. (Pubitemid 41599825)
    • (2005) Nature , vol.438 , Issue.7064 , pp. 90-93
    • Croft, M.T.1    Lawrence, A.D.2    Raux-Deery, E.3    Warren, M.J.4    Smith, A.G.5
  • 13
    • 63049103598 scopus 로고    scopus 로고
    • Symbiotic use of pathogenic strategies: Rhizobial protein secretion systems
    • Deakin WJ, Broughton WJ. (2009). Symbiotic use of pathogenic strategies: rhizobial protein secretion systems. Nat Rev Microbiol 7: 312-320.
    • (2009) Nat Rev Microbiol , vol.7 , pp. 312-320
    • Deakin, W.J.1    Broughton, W.J.2
  • 14
    • 67049146381 scopus 로고    scopus 로고
    • Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors
    • Degnan PH, Yu Y, Sisneros N, Wing RA, Moran NA. (2009). Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors. Proc Natl Acad Sci USA 106: 9063-9068.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 9063-9068
    • Degnan, P.H.1    Yu, Y.2    Sisneros, N.3    Wing, R.A.4    Moran, N.A.5
  • 16
    • 79952449128 scopus 로고    scopus 로고
    • Nutritional exchanges in the arbuscular mycorrhizal symbiosis: Implications for sustainable agriculture
    • Fitter AH, Helgason T, Hodge A. (2011). Nutritional exchanges in the arbuscular mycorrhizal symbiosis: implications for sustainable agriculture. Fungal Biol Rev 25: 68-72.
    • (2011) Fungal Biol Rev , vol.25 , pp. 68-72
    • Fitter, A.H.1    Helgason, T.2    Hodge, A.3
  • 17
    • 21144432943 scopus 로고    scopus 로고
    • The Wolbachia genome of Brugia malayi: Endosymbiont evolution within a human pathogenic nematode
    • Foster J, Ganatra M, Kamal I, Ware J, Makarova K, Ivanova N et al. (2005). The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode. PLoS Biol 3: 599-614.
    • (2005) PLoS Biol , vol.3 , pp. 599-614
    • Foster, J.1    Ganatra, M.2    Kamal, I.3    Ware, J.4    Makarova, K.5    Ivanova, N.6
  • 18
    • 12744265227 scopus 로고    scopus 로고
    • Characterization of a Glomus intraradices gene encoding a putative Zn transporter of the cation diffusion facilitator family
    • Gonzalez-Guerrero M, Azcon-Aguilar C, Mooney M, Valderas A, MacDiarmid CW, Eide DJ et al. (2005). Characterization of a Glomus intraradices gene encoding a putative Zn transporter of the cation diffusion facilitator family. Fungal Genet Biol 42: 130-140.
    • (2005) Fungal Genet Biol , vol.42 , pp. 130-140
    • Gonzalez-Guerrero, M.1    Azcon-Aguilar, C.2    Mooney, M.3    Valderas, A.4    MacDiarmid, C.W.5    Eide, D.J.6
  • 19
    • 77956380625 scopus 로고    scopus 로고
    • Substantial nitrogen acquisition by arbuscular mycorrhizal fungi from organic material has implications for N cycling
    • Hodge A, Fitter AH. (2010). Substantial nitrogen acquisition by arbuscular mycorrhizal fungi from organic material has implications for N cycling. Proc Natl Acad Sci USA 107: 13754-13759.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 13754-13759
    • Hodge, A.1    Fitter, A.H.2
  • 20
    • 77953624125 scopus 로고    scopus 로고
    • Diverse bacteria inhabit living hyphae of phylogenetically diverse fungal endophytes
    • Hoffman MT, Arnold AE. (2010). Diverse bacteria inhabit living hyphae of phylogenetically diverse fungal endophytes. Appl Environ Microbiol 76: 4063-4075.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 4063-4075
    • Hoffman, M.T.1    Arnold, A.E.2
  • 21
    • 4944266949 scopus 로고    scopus 로고
    • Isolation, free-living capacities, and genome structure of "Candidatus Glomeribacter gigasporarum," the endocellular bacterium of the mycorrhizal fungus Gigaspora margarita
    • DOI 10.1128/JB.186.20.6876-6884.2004
    • Jargeat P, Cosseau C, Ola'h B, Jauneau A, Bonfante P, Batut J et al. (2004). Isolation, free-living capacities, and genome structure of 'Candidatus glomeribacter gigasporarum,' the endocellular bacterium of the mycorrhizal fungus Gigaspora margarita. J Bacteriol 186: 6876-6884. (Pubitemid 39332127)
    • (2004) Journal of Bacteriology , vol.186 , Issue.20 , pp. 6876-6884
    • Jargeat, P.1    Cosseau, C.2    Ola'h, B.3    Jauneau, A.4    Bonfante, P.5    Batut, J.6    Becard, G.7
  • 23
    • 77957343695 scopus 로고    scopus 로고
    • The extinction dynamics of bacterial pseudogenes
    • doi:10.1371/journal.pgen.1001050
    • Kuo CH, Ochman H. (2010). The extinction dynamics of bacterial pseudogenes. PLoS Genet 6: e1001050. doi:10.1371/journal.pgen.1001050.
    • (2010) PLoS Genet , vol.6
    • Kuo, C.H.1    Ochman, H.2
  • 24
    • 78751517729 scopus 로고    scopus 로고
    • Complete genome sequence of Burkholderia rhizoxinica, an endosymbiont of Rhizopus microsporus
    • Lackner G, Moebius N, Partida-Martinez L, Hertweck C. (2011a). Complete genome sequence of Burkholderia rhizoxinica, an endosymbiont of Rhizopus microsporus. J Bacteriol 193: 783-784.
    • (2011) J Bacteriol , vol.193 , pp. 783-784
    • Lackner, G.1    Moebius, N.2    Partida-Martinez, L.3    Hertweck, C.4
  • 25
    • 78751571196 scopus 로고    scopus 로고
    • Endofungal bacterium controls its host by an hrp type III secretion system
    • Lackner G, Moebius N, Hertweck C. (2011b). Endofungal bacterium controls its host by an hrp type III secretion system. ISME J 5: 252-261.
    • (2011) ISME J , vol.5 , pp. 252-261
    • Lackner, G.1    Moebius, N.2    Hertweck, C.3
  • 26
    • 33645340058 scopus 로고    scopus 로고
    • Endobacteria or bacterial endosymbionts? to be or not to be
    • Lumini E, Ghignone S, Bianciotto V, Bonfante P. (2006). Endobacteria or bacterial endosymbionts? To be or not to be. New Phytol 170: 205-208.
    • (2006) New Phytol , vol.170 , pp. 205-208
    • Lumini, E.1    Ghignone, S.2    Bianciotto, V.3    Bonfante, P.4
  • 27
    • 34250724498 scopus 로고    scopus 로고
    • Presymbiotic growth and sporal morphology are affected in the arbuscular mycorrhizal fungus Gigaspora margarita cured of its endobacteria
    • DOI 10.1111/j.1462-5822.2007.00907.x
    • Lumini E, Bianciotto V, Jargeat P, Novero M, Salvioli A, Faccio A et al. (2007). Presymbiotic growth and sporal morphology are affected in the arbuscular mycorrhizal fungus Gigaspora margarita cured of its endobacteria. Cell Microbiol 9: 1716-1729. (Pubitemid 46958798)
    • (2007) Cellular Microbiology , vol.9 , Issue.7 , pp. 1716-1729
    • Lumini, E.1    Bianciotto, V.2    Jargeat, P.3    Novero, M.4    Salvioli, A.5    Faccio, A.6    Becard, G.7    Bonfante, P.8
  • 28
    • 70349349177 scopus 로고    scopus 로고
    • Convergent evolution of metabolic roles in bacterial co-symbionts of insects
    • McCutcheon JP, McDonald BR, Moran NA. (2009). Convergent evolution of metabolic roles in bacterial co-symbionts of insects. Proc Natl Acad Sci USA 106: 15394-15399.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 15394-15399
    • McCutcheon, J.P.1    McDonald, B.R.2    Moran, N.A.3
  • 29
    • 77958507828 scopus 로고    scopus 로고
    • Functional convergence in reduced genomes of bacterial symbionts spanning 200 my of evolution
    • McCutcheon JP, Moran NA. (2010). Functional convergence in reduced genomes of bacterial symbionts spanning 200 my of evolution. Genome Biol Evol 2: 708-718.
    • (2010) Genome Biol Evol , vol.2 , pp. 708-718
    • McCutcheon, J.P.1    Moran, N.A.2
  • 30
    • 0026495490 scopus 로고
    • A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies, and infected plant tissues
    • Moller EM, Bahnweg G, Sandermann H, Geiger HH. (1992). A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies, and infected plant tissues. Nucleic Acids Res 20: 6115-6116.
    • (1992) Nucleic Acids Res , vol.20 , pp. 6115-6116
    • Moller, E.M.1    Bahnweg, G.2    Sandermann, H.3    Geiger, H.H.4
  • 31
    • 58449125407 scopus 로고    scopus 로고
    • Genomics and evolution of heritable bacterial symbionts
    • Moran NA, McCutcheon JP, Nakabachi A. (2008). Genomics and evolution of heritable bacterial symbionts. Annu Rev Genet 42: 165-190.
    • (2008) Annu Rev Genet , vol.42 , pp. 165-190
    • Moran, N.A.1    McCutcheon, J.P.2    Nakabachi, A.3
  • 32
    • 77954054888 scopus 로고    scopus 로고
    • The obligate endobacteria of arbuscular mycorrhizal fungi are ancient heritable components related to the Mollicutes
    • Naumann M, Schusler A, Bonfante P. (2010). The obligate endobacteria of arbuscular mycorrhizal fungi are ancient heritable components related to the Mollicutes. ISME J 4: 862-871.
    • (2010) ISME J , vol.4 , pp. 862-871
    • Naumann, M.1    Schusler, A.2    Bonfante, P.3
  • 33
    • 77953427842 scopus 로고    scopus 로고
    • Stenotrophomonas maltophilia: Significant contemporary hospital pathogen-review
    • Nyc O,Matejkova J. (2010). Stenotrophomonas maltophilia: significant contemporary hospital pathogen-review. Folia Microbiol (Praha) 55: 286-294.
    • (2010) Folia Microbiol (Praha) , vol.55 , pp. 286-294
    • Nyc, O.1    Matejkova, J.2
  • 34
    • 73449111594 scopus 로고    scopus 로고
    • Life on arginine for Mycoplasma hominis: Clues from its minimal genome and comparison with other human urogenital Mycoplasmas
    • Pereyre S, Sirand-Pugnet P, Beven L, Charron A, Renaudin H, Barre A et al. (2009). Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital Mycoplasmas. PLoS Genet 5: e1000677.
    • (2009) PLoS Genet , vol.5
    • Pereyre, S.1    Sirand-Pugnet, P.2    Beven, L.3    Charron, A.4    Renaudin, H.5    Barre, A.6
  • 35
    • 0034036919 scopus 로고    scopus 로고
    • A Burkholderia strain living inside the arbuscular mycorrhizal fungus Gigaspora margarita possesses the vacB gene, which is involved in host cell colonization by bacteria
    • DOI 10.1007/s002480000008
    • Ruiz-Lozano JM, Bonfante P. (2000). A Burkholderia strain living inside the arbuscular mycorrhizal fungus Gigaspora margarita possesses the vacB gene, which is involved in host cell colonization by bacteria. Microb Ecol 39: 137-144. (Pubitemid 30343239)
    • (2000) Microbial Ecology , vol.39 , Issue.2 , pp. 137-144
    • Ruiz-Lozano, J.M.1    Bonfante, P.2
  • 36
    • 51249122432 scopus 로고    scopus 로고
    • Simultaneous detection and quantification of the unculturable microbe Candidatus Glomeribacter gigasporarum inside its fungal host Gigaspora margarita
    • Salvioli A, Lumini E, Anca IA, Bianciotto V, Bonfante P. (2008). Simultaneous detection and quantification of the unculturable microbe Candidatus Glomeribacter gigasporarum inside its fungal host Gigaspora margarita. New Phytol 180: 248-257.
    • (2008) New Phytol , vol.180 , pp. 248-257
    • Salvioli, A.1    Lumini, E.2    Anca, I.A.3    Bianciotto, V.4    Bonfante, P.5
  • 38
    • 0347123154 scopus 로고    scopus 로고
    • Ornithine and arginine decarboxylase activities and effect of some polyamine biosynthesis inhibitors on Gigaspora rosea germinating spores
    • DOI 10.1016/S0378-1097(03)00880-2
    • Sannazzaro AI, Alvarez CL, Menendez AB, Pieckenstain FL, Alberto EO, Ruiz OA. (2004). Ornithine and arginine decarboxylase activities and effect of some polyamine biosynthesis inhibitors on Gigaspora rosea germinating spores. FEMS Microbiol Lett 230: 115-121. (Pubitemid 38091746)
    • (2004) FEMS Microbiology Letters , vol.230 , Issue.1 , pp. 115-121
    • Sannazzaro, A.I.1    Alvarez, C.L.2    Menendez, A.B.3    Pieckenstain, F.L.4    Alberto, E.O.5    Ruiz, O.A.6
  • 39
    • 75749107844 scopus 로고    scopus 로고
    • The genome of the amoeba symbiont 'Candidatus Amoebophilus asiaticus' reveals common mechanisms for host cell interaction among amoeba-associated bacteria
    • Schmitz-Esser S, Tischler P, Arnold R, Montanaro J, Wagner M, Rattei T et al. (2010). The genome of the amoeba symbiont 'Candidatus Amoebophilus asiaticus' reveals common mechanisms for host cell interaction among amoeba-associated bacteria. J Bacteriol 192: 1045-1057.
    • (2010) J Bacteriol , vol.192 , pp. 1045-1057
    • Schmitz-Esser, S.1    Tischler, P.2    Arnold, R.3    Montanaro, J.4    Wagner, M.5    Rattei, T.6
  • 41
    • 78649462075 scopus 로고    scopus 로고
    • Sinorhizobium meliloti requires a cobalamin-dependent ribonucleotide reductase for symbiosis with its plant host
    • Taga ME, Walker GC. (2010). Sinorhizobium meliloti requires a cobalamin-dependent ribonucleotide reductase for symbiosis with its plant host. Mol Plant Microbe Interact 23: 1643-1654.
    • (2010) Mol Plant Microbe Interact , vol.23 , pp. 1643-1654
    • Taga, M.E.1    Walker, G.C.2
  • 42
    • 77954338505 scopus 로고    scopus 로고
    • Regulation of the nitrogen transfer pathway in the arbuscular mycorrhizal symbiosis: Gene characterization and the coordination of expression with nitrogen flux
    • Tian CJ, Kasiborski B, Koul R, Lammers PJ, Bucking H, Shachar-Hill Y. (2010). Regulation of the nitrogen transfer pathway in the arbuscular mycorrhizal symbiosis: gene characterization and the coordination of expression with nitrogen flux. Plant Physiol 153: 1175-1187.
    • (2010) Plant Physiol , vol.153 , pp. 1175-1187
    • Tian, C.J.1    Kasiborski, B.2    Koul, R.3    Lammers, P.J.4    Bucking, H.5    Shachar-Hill, Y.6
  • 43
    • 84908096911 scopus 로고    scopus 로고
    • MicroScope: A platform for microbial genome annotation and comparative genomics
    • (Oxford) 2009:bap021; e-pub ahead of print 2009
    • Vallenet D, Engelen S, Mornico D, Cruveiller S, Fleury L, Lajus A et al. (2009). MicroScope: a platform for microbial genome annotation and comparative genomics. Database (Oxford). 2009:bap021; e-pub ahead of print 2009.
    • (2009) Database
    • Vallenet, D.1    Engelen, S.2    Mornico, D.3    Cruveiller, S.4    Fleury, L.5    Lajus, A.6
  • 45
    • 84934444414 scopus 로고    scopus 로고
    • Polyamines in bacteria: Pleiotropic effects yet specific mechanisms
    • Wortham BW, Patel CN, Oliveira MA. (2007). Polyamines in bacteria: pleiotropic effects yet specific mechanisms. Adv Exp Med Biol 603: 106-115.
    • (2007) Adv Exp Med Biol , vol.603 , pp. 106-115
    • Wortham, B.W.1    Patel, C.N.2    Oliveira, M.A.3
  • 46
    • 19344378727 scopus 로고    scopus 로고
    • Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: A streamlined genome overrun by mobile genetic elements
    • Wu M, Sun LV, Vamathevan J, Riegler M, Deboy R, Brownlie JC et al. (2004). Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. PLoS Biol 2: 327-341.
    • (2004) PLoS Biol , vol.2 , pp. 327-341
    • Wu, M.1    Sun, L.V.2    Vamathevan, J.3    Riegler, M.4    Deboy, R.5    Brownlie, J.C.6
  • 47
    • 10344264978 scopus 로고    scopus 로고
    • Metabolic interdependence of obligate intracellular bacteria and their insect hosts
    • DOI 10.1128/MMBR.68.4.745-770.2004
    • Zientz E, Dandekar T, Gross R. (2004). Metabolic interdependence of obligate intracellular bacteria and their insect hosts. Microbiol Mol Biol Rev 68: 745-770. (Pubitemid 39628535)
    • (2004) Microbiology and Molecular Biology Reviews , vol.68 , Issue.4 , pp. 745-770
    • Zientz, E.1    Dandekar, T.2    Gross, R.3


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