Integrating segmentation information for improved mrf-based elastic image registration

IEEE Transactions on Image Processing

Volumn 21, Issue 1, 2012, Pages 170-183

  Mahapatra, Dwarikanath ^a   Sun, Ying ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

Combined registration and segmentation (CRS); labels; Markov random fields (MRFs); natural and medical images; object of interest (OOI); simulated deformations

Indexed keywords

CLASS PROBABILITIES; COMBINED REGISTRATION AND SEGMENTATION (CRS); COMPUTATION TIME; DISPLACEMENT FIELD; ELASTIC IMAGE REGISTRATION; GRADIENT INFORMATIONS; GRAPH-CUT; IMAGE INTENSITIES; MARKOV RANDOM FIELD; MEDICAL IMAGES; MULTISCALES; OBJECT OF INTERESTS; OBJECTIVE FUNCTIONS; REGISTRATION ACCURACY; REGISTRATION METHODS; SEGMENTATION INFORMATIONS; SUBPIXEL REGISTRATION; SYNTHETIC IMAGES;

DEFORMATION; IMAGE REGISTRATION; INFORMATION USE; LABELS; MEDICAL IMAGING;

IMAGE SEGMENTATION;

ALGORITHM; ARTICLE; AUTOMATED PATTERN RECOGNITION; COMPUTER ASSISTED DIAGNOSIS; ELASTOGRAPHY; HUMAN; IMAGE ENHANCEMENT; IMAGE SUBTRACTION; METHODOLOGY; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; SIGNAL PROCESSING;

ALGORITHMS; ELASTICITY IMAGING TECHNIQUES; HUMANS; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; PATTERN RECOGNITION, AUTOMATED; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SIGNAL PROCESSING, COMPUTER-ASSISTED; SUBTRACTION TECHNIQUE;

EID: 84255162802     PISSN: 10577149     EISSN: None     Source Type: Journal    
DOI: 10.1109/TIP.2011.2162738     Document Type: Article

References (38)

1. T. F. Cootes, A. Hill, C. J. Taylor, and J. Haslam, "Use of active shape models for locating structure in medical images," Image Vis. Comput., vol. 12, no. 6, pp. 355-365, 1994.
2. R. Bajcsy and S. Kovacic, "Multiresolution elastic matching," Comput. Vis. Graph. Image Process., vol. 46, no. 1, pp. 1-21, Apr. 1989.
3. G. E. Christensen, M. I. Miller, and M. Vannier, "3D brain mapping using a deformable anatomy," Phys. Med. Biol., vol. 39, no. 3, pp. 609-618, Mar. 1994. (Pubitemid 24149137)
4. M. Bro-Nielsen and C. Gramkow, "Fast fluid registration of medical images," in Proc. VBC, 1996, pp. 267-276. (Pubitemid 126133707)
5. H. Wang, L. Dong, J. O'Daniel, R. Mohan, A. S. Garden, K. K. Ang, D. A. Kuban, M. Bonnen, J. Y. Chang, and R. Cheung, "Validation of an accelerated 'demons' algorithm for deformable image registration in radiation therapy," Phys. Med. Biol., vol. 50, no. 12, pp. 2887-2905, Jun. 2005. (Pubitemid 40771018)
6. C. R. Meyer, J. L. Boes, B. Kim, P. H. Bland, K. R. Zasadny, P. V. Kison, K. Koral, K. A. Frey, and R. L. Wahl, "Demonstration of accuracy and clinical versatility of mutual information for automatic multimodality image fusion using affine and thin-plate spline warped geometric deformations," Med. Image Anal., vol. 1, no. 3, pp. 195-206, Apr. 1997.
7. D. Rueckert, L. I. Sonoda, C. Hayes, D. L. G. Hill, M. O. Leach, and D. J. Hawkes, "Nonrigid registration using free-form deformations: Application to breast MR images," IEEE Trans. Med. Imag., vol. 18, no. 8, pp. 712-721, Aug. 1999. (Pubitemid 32262025)
8. Y. Zheng, J. Yu, C. Kambhamettu, S. Englander, M. D. Schnall, and D. Shen, "De-enhancing the dynamic contrast-enhanced breast MRI for robust registration," in Proc. MICCAI, 2007, pp. 933-941.
9. G. K. Rohde, A. Aldroubi, and B. M. Dawant, "The adaptive bases algorithm for intensity based nonrigid image registration," IEEE Trans. Med. Imag., vol. 22, no. 11, pp. 1470-1479, Nov. 2003.
10. A. Shekhovtsov, I. Kovtun, and V. Hlavác, "Efficient MRF deformation model for non-rigid image matching," Comput. Vis. Image Understand., vol. 112, no. 1, pp. 91-99, Oct. 2008.
11. B. Glocker, N. Komodakis, G. Tziritas, N. Navab, and N. Paragios, "Dense image registration through MRFs and efficient linear programming," Med. Image Anal., vol. 12, no. 6, pp. 731-741, Dec. 2008.
12. D. Mahapatra and Y. Sun, "Nonrigid registration of dynamic renal MR images using a saliency based MRF model," in Proc. MICCAI, 2008, pp. 771-779.
13. R. C. Gonzalez and R. E.Woods, Digital Image Processing, 2nd ed. Upper Saddle River, NJ: Prentice-Hall, 2002.
14. M. Kass, A. Witkin, and D. Terzolpopulos, "Snakes: Active contour models," Int. J. Comput. Vis., vol. 1, no. 4, pp. 321-331, 1988.
15. M. Isard and A. Blake, Active Contours. New York: Springer-Verlag, 1998.
16. T. F. Chan and L. A. Vese, "Active contours without edges," IEEE Trans. Image Process., vol. 10, no. 2, pp. 266-277, Feb. 2001. (Pubitemid 32254596)
17. Y. Boykov and G. Funka-Lea, "Graph cuts and efficient N-D image segmentation," Int. J. Comput. Vis., vol. 70, no. 2, pp. 109-131, Nov. 2006. (Pubitemid 44127252)
18. A. Yezzi, L. Zollei, and T. Kapur, "A variational framework for joint segmentation and registration," in Proc. MMBIA, 2001, pp. 44-51. (Pubitemid 34086176)
19. F. Wang, B. Vemuri, and S. Eisenschenk, "Joint registration and segmentation of neuroanatomic structures from brain MRI," Acad. Radiol., vol. 13, no. 9, pp. 1104-1111, Sep. 2006. (Pubitemid 44403961)
20. J. An, Y. Chen, F. Huang, D.Wilson, and E. Geiser, "A variational PDE based level set method for a simultaneous segmentation and non-rigid registration," in Proc. MICCAI, 2005, pp. 286-293. (Pubitemid 43828262)
21. P. P.Wyatt and J. A. Noble, "MAP MRF joint segmentation and registration," in Proc. MICCAI-Part I, T. Dohi and R. Kikinis, Eds., 2002, vol. 2488, Lecture Notes in Computer Science, pp. 580-587, London, U.K.: Springer-Verlag.
22. K. M. Pohl, J. Fisher, W. E. L. Grimson, R. Kikinis, and W. M. Wells, "A Bayesian model for joint segmentation and registration," NeuroImage, vol. 31, no. 1, pp. 228-239, May 2006. (Pubitemid 44250881)
23. J. Ashburner and K. J. Friston, "Unified segmentation," NeuroImage, vol. 26, no. 3, pp. 839-851, Jul. 2005. (Pubitemid 40825026)
24. T. Song, V. Lee, H. Rusinek, S. Wong, and A. F. Laine, "Integrated four dimensional registration and segmentation of dynamic renal MR images," in Proc. MICCAI, 2006, pp. 758-765. (Pubitemid 44609289)
25. D. Mahapatra and Y. Sun, "Joint registration and segmentation of dynamic cardiac perfusion images using MRFs," in Proc. MICCAI, 2010, pp. 493-501.
26. A. Tsai, A. Yezzi, W. Wells, C. Tempany, D. Tucker, A. Fan, W. E. Grimson, and A. Willsky, "A shape-based approach to the segmentation of medical imagery using level sets," IEEE Trans. Med. Imag., vol. 22, no. 2, pp. 137-154, Feb. 2003.
27. T. Cootes, C. Beeston, G. Edwards, and C. Taylor, "Unified framework for atlas matching using active appearance models," in Proc. IPMI, 1999, pp. 322-333.
28. Y. Wang and L. Staib, "Boundary finding with correspondence using statistical shape models," in Proc. CVPR, 1998, pp. 338-345.
29. M. Leventon, E. Grimson, and O. Faugeras, "Statistical shape influence in geodesic active contours," in Proc. CVPR, 2000, pp. 316-322.
30. D. Cremers, F. Tischhauser, J. Weickert, and C. Schnorr, "Diffusion snakes: Introducing statistical shape knowledge into the Mumford-Shah functional," Int. J. Comput. Vis., vol. 50, no. 3, pp. 295-313, Dec. 2002. (Pubitemid 35377417)
31. N. Paragios, "A variational approach for the segmentation of the left ventricle in cardiac image analysis," Int. J. Comput. Vis., vol. 50, no. 3, pp. 345-362, Dec. 2002. (Pubitemid 35381598)
32. Y. Chen, H. D. Tagare, S. Thiruvenkadam, F. Huang, D. Wilson, K. S. Gopinath, R. W. Briggs, and E. A. Geiser, "Using prior shapes in geometric active contours in a variational framework," Int. J. Comput. Vis., vol. 50, no. 3, pp. 315-328, Dec. 2002. (Pubitemid 35377418)
33. V. Kolmogorov and R. Zabih, "What energy functions can be minimized via graph cuts?," IEEE Trans. Pattern Anal. Mach. Intell., vol. 26, no. 2, pp. 147-159, Feb. 2004.
34. O. Juan and Y. Boykov, "Active graph cuts," in Proc. IEEE Conf. Comput. Vis. Pattern Recog., 2006, pp. 1023-1029. (Pubitemid 44931434)
35. Y. Boykov, O. Veksler, and R. Zabih, "Fast approximate energy minimization via graph cuts," IEEE Trans. Pattern Anal. Mach. Intell., vol. 23, no. 11, pp. 1222-1239, Nov. 2001. (Pubitemid 33137959)
36. Y. Sun, M.-P. Jolly, and J. M. F. Moura, "Contrast-invariant registration of cardiac and renal MR perfusion images," in Proc. MICCAI, 2004, pp. 903-910. (Pubitemid 40787466)
37. H. Lombart, Y. Sun, L. Grady, and C. Xu, "A multilevel banded graph cuts method for fast image segmentation," in Proc. ICCV, 2005, vol. 1, pp. 259-265. (Pubitemid 44054967)
38. C. Pluempitiwiriyawej, J. M. F. Moura, Y. L.Wu, and C. Ho, "STACS: Newactive contour scheme for cardiacMRimage segmentation," IEEE Trans. Med. Imag., vol. 24, no. 5, pp. 593-603, May 2005. (Pubitemid 40680121)