-
1
-
-
77955284405
-
Loss, mutation and deregulation of L3MBTL4 in breast cancers
-
doi: 10.1186/1476-4598-9-213
-
Addou-Klouche L, Adélaïde J, Finetti P, Cervera N, Ferrari A, Bekhouche I, Sircoulomb F, Sotiriou C, Viens P, Moulessehoul S, et al. 2010. Loss, mutation and deregulation of L3MBTL4 in breast cancers. Mol Cancer 9: 213. doi: 10.1186/1476-4598-9-213.
-
(2010)
Mol Cancer
, vol.9
, pp. 213
-
-
Addou-Klouche, L.1
Adélaïde, J.2
Finetti, P.3
Cervera, N.4
Ferrari, A.5
Bekhouche, I.6
Sircoulomb, F.7
Sotiriou, C.8
Viens, P.9
Moulessehoul, S.10
-
2
-
-
77956645419
-
EAK-7 controls development and life span by regulating nuclear DAF-16/FoxO activity
-
Alam H, Williams TW, Dumas KJ, Guo C, Yoshina S, Mitani S, Hu PJ. 2010. EAK-7 controls development and life span by regulating nuclear DAF-16/FoxO activity. Cell Metab 12: 30-41.
-
(2010)
Cell Metab
, vol.12
, pp. 30-41
-
-
Alam, H.1
Williams, T.W.2
Dumas, K.J.3
Guo, C.4
Yoshina, S.5
Mitani, S.6
Hu, P.J.7
-
3
-
-
27744554044
-
RNA flexibility in the dimerization domain of a gamma retrovirus
-
Badorrek CS, Weeks KM. 2005. RNA flexibility in the dimerization domain of a gamma retrovirus. Nat Chem Biol 1: 104-111.
-
(2005)
Nat Chem Biol
, vol.1
, pp. 104-111
-
-
Badorrek, C.S.1
Weeks, K.M.2
-
5
-
-
35748983219
-
Genome-wide association with select biomarker traits in the Framingham Heart Study
-
doi: 10.1186/1471-2350-8-S1-S11
-
Benjamin EJ, Dupuis J, Larson MG, Lunetta KL, Booth SL, Govindaraju DR, Kathiresan S, Keaney JF Jr, Keyes MJ, Lin JP, et al. 2007. Genome-wide association with select biomarker traits in the Framingham Heart Study. BMC Med Genet (Suppl 1) 8: S11. doi: 10.1186/1471-2350-8-S1-S11.
-
(2007)
BMC Med Genet
, vol.8
, Issue.SUPPL. 1
-
-
Benjamin, E.J.1
Dupuis, J.2
Larson, M.G.3
Lunetta, K.L.4
Booth, S.L.5
Govindaraju, D.R.6
Kathiresan, S.7
Keaney Jr., J.F.8
Keyes, M.J.9
Lin, J.P.10
-
6
-
-
33744979613
-
Partition function and base pairing probabilities of RNA heterodimers
-
doi: 10.1186/1748-7188-1-3
-
Bernhart SH, Tafer H, Muckstein U, Flamm C, Stadler PF, Hofacker IL. 2006. Partition function and base pairing probabilities of RNA heterodimers. Algorithms Mol Biol 1: 3. doi: 10.1186/1748-7188-1-3.
-
(2006)
Algorithms Mol Biol
, vol.1
, pp. 3
-
-
Bernhart, S.H.1
Tafer, H.2
Muckstein, U.3
Flamm, C.4
Stadler, P.F.5
Hofacker, I.L.6
-
7
-
-
38049153468
-
Effect of single nucleotide polymorphisms on expression of the gene encoding thrombin-activatable fibrinolysis inhibitor: A functional analysis
-
Boffa MB, Maret D, Hamill JD, Bastajian N, Crainich P, Jenny NS, Tang Z, Macy EM, Tracy RP, Franco RF, et al. 2008. Effect of single nucleotide polymorphisms on expression of the gene encoding thrombin-activatable fibrinolysis inhibitor: A functional analysis. Blood 111: 183-189.
-
(2008)
Blood
, vol.111
, pp. 183-189
-
-
Boffa, M.B.1
Maret, D.2
Hamill, J.D.3
Bastajian, N.4
Crainich, P.5
Jenny, N.S.6
Tang, Z.7
Macy, E.M.8
Tracy, R.P.9
Franco, R.F.10
-
8
-
-
0035977453
-
Characterization of ADAMTS14, a novel member of the ADAMTS metalloproteinase family
-
DOI 10.1016/S0167-4781(01)00329-3, PII S0167478101003293
-
Bolz H, Ramírez A, von Brederlow B, Kubisch C. 2001. Characterization of ADAMTS14, a novel member of the ADAMTS metalloproteinase family. Biochim Biophys Acta 1522: 221-225. (Pubitemid 34075547)
-
(2001)
Biochimica et Biophysica Acta - Gene Structure and Expression
, vol.1522
, Issue.3
, pp. 221-225
-
-
Bolz, H.1
Ramirez, A.2
Von Brederlow, B.3
Kubisch, C.4
-
9
-
-
34447629519
-
A novel deletion in the FTL gene causes hereditary hyperferritinemia cataract syndrome (HHCS) by alteration of the transcription start site
-
doi: 10.1002/humu.9501
-
Burdon KP, Sharma S, Chen CS, Dimasi DP, Mackey DA, Craig JE. 2007. A novel deletion in the FTL gene causes hereditary hyperferritinemia cataract syndrome (HHCS) by alteration of the transcription start site. Hum Mutat 28: 742. doi: 10.1002/humu.9501.
-
(2007)
Hum Mutat
, vol.28
, pp. 742
-
-
Burdon, K.P.1
Sharma, S.2
Chen, C.S.3
Dimasi, D.P.4
Mackey, D.A.5
Craig, J.E.6
-
10
-
-
29944445014
-
Cryptic haplotypes of SERPINA1 confer susceptibility to chronic obstructive pulmonary disease
-
DOI 10.1016/j.rmedu.2006.01.018
-
Chappell S, Daly L, Morgan K, Guetta Baranes T, Roca J, Rabinovich R, Millar A, Donnelly SC, Keatings V, MacNee W, et al. 2006. Cryptic haplotypes of SERPINA1 confer susceptibility to chronic obstructive pulmonary disease. Hum Mutat 27: 103-109. (Pubitemid 43042972)
-
(2006)
Human Mutation
, vol.27
, Issue.1
, pp. 103-109
-
-
Chappell, S.1
Daly, L.2
Morgan, K.3
Baranes, T.G.4
Roca, J.5
Rabinovich, R.6
Millar, A.7
Donnelly, S.C.8
Keatings, V.9
MacNee, W.10
Stolk, J.11
Hiemstra, P.12
Miniati, M.13
Monti, S.14
O'Connor, C.M.15
Kalsheker, N.16
-
11
-
-
46549085105
-
Unwinding RNA's secrets: Advances in the biology, physics, and modeling of complex RNAs
-
Chu VB, Herschlag D. 2008. Unwinding RNA's secrets: Advances in the biology, physics, and modeling of complex RNAs. Curr Opin Struct Biol 18: 305-314.
-
(2008)
Curr Opin Struct Biol
, vol.18
, pp. 305-314
-
-
Chu, V.B.1
Herschlag, D.2
-
12
-
-
0035103330
-
Double-gradient denaturing gradient gel electrophoresis assay for identification of L-ferritin iron-responsive element mutations responsible for hereditary hyperferritinemia-cataract syndrome: Identification of the new mutation Cl4G
-
Cremonesi L, Fumagalli A, Soriani N, Ferrari M, Levi S, Belloli S, Ruggeri G, Arosio P. 2001. Double-gradient denaturing gradient gel electrophoresis assay for identification of L-ferritin ironresponsive element mutations responsible for hereditary hyperferritinemia-cataract syndrome: Identification of the new mutation C14G. Clin Chem 47: 491-497. (Pubitemid 32222464)
-
(2001)
Clinical Chemistry
, vol.47
, Issue.3
, pp. 491-497
-
-
Cremonesi, L.1
Fumagalli, A.2
Soriani, N.3
Ferrari, M.4
Levi, S.5
Belloli, S.6
Ruggeri, G.7
Arosio, P.8
-
13
-
-
0345419053
-
Scanning mutations of the 5′UTR regulatory sequence of L-ferritin by denaturing high-performance liquid chromatography: Identification of new mutations
-
DOI 10.1046/j.1365-2141.2003.04253.x
-
Cremonesi L, Paroni R, Foglieni B, Galbiati S, Fermo I, Soriani N, Belloli S, Ruggeri G, Biasiotto G, Cazzola M, et al. 2003. Scanning mutations of the 5′UTR regulatory sequence of L-ferritin by denaturing high-performance liquid chromatography: Identification of new mutations. Br J Haematol 121: 173-179. (Pubitemid 36461286)
-
(2003)
British Journal of Haematology
, vol.121
, Issue.1
, pp. 173-179
-
-
Cremonesi, L.1
Paroni, R.2
Foglieni, B.3
Galbiati, S.4
Fermo, I.5
Soriani, N.6
Belloli, S.7
Ruggeri, G.8
Biasiotto, G.9
Cazzola, M.10
Ferrari, F.11
Ferrari, M.12
Arosio, P.13
-
14
-
-
0022333041
-
Sensitivity and specificity of a monitoring test
-
DeLong ER, Vernon WB, Bollinger RR. 1985. Sensitivity and specificity of a monitoring test. Biometrics 41: 947-958.
-
(1985)
Biometrics
, vol.41
, pp. 947-958
-
-
DeLong, E.R.1
Vernon, W.B.2
Bollinger, R.R.3
-
15
-
-
3242877996
-
Sfold web server for statistical folding and rational design of nucleic acids
-
DOI 10.1093/nar/gkh449
-
Ding Y, Chan CY, Lawrence CE. 2004. Sfold web server for statistical folding and rational design of nucleic acids. Nucleic Acids Res 32: W135-W141. (Pubitemid 38997315)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.WEB SERVER ISS.
-
-
Ding, Y.1
Chan, C.Y.2
Lawrence, C.E.3
-
16
-
-
23644448438
-
RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble
-
DOI 10.1261/rna.2500605
-
Ding Y, Chan CY, Lawrence CE. 2005. RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble. RNA 11: 1157-1166. (Pubitemid 41132387)
-
(2005)
RNA
, vol.11
, Issue.8
, pp. 1157-1166
-
-
Ding, Y.1
Chi, Y.C.2
Lawrence, C.E.3
-
17
-
-
33748300801
-
Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition
-
DOI 10.1016/j.str.2006.07.008, PII S0969212606003303
-
Edwards TE, Ferre-D'Amare AR. 2006. Crystal structures of the thibox riboswitch bound to thiamine pyrophosphate analogs reveal adaptive RNA-small molecule recognition. Structure 14: 1459-1468. (Pubitemid 44331619)
-
(2006)
Structure
, vol.14
, Issue.9
, pp. 1459-1468
-
-
Edwards, T.E.1
Ferre-D'Amare, A.R.2
-
18
-
-
32544459576
-
Microelectronic DNA chip for hereditary hyperferritinemia cataract syndrome, a model for large-scale analysis of disorders of iron metabolism
-
DOI 10.1002/humu.20294
-
Ferrari F, Foglieni B, Arosio P, Camaschella C, Daraio F, Levi S, Garcia Erce JA, Beaumont C, Cazzola M, Ferrari M, et al. 2006. Microelectronic DNA chip for hereditary hyperferritinemia cataract syndrome, a model for large-scale analysis of disorders of iron metabolism. Hum Mutat 27: 201-208. (Pubitemid 43238036)
-
(2006)
Human Mutation
, vol.27
, Issue.2
, pp. 201-208
-
-
Ferrari, F.1
Foglieni, B.2
Arosio, P.3
Camaschella, C.4
Daraio, F.5
Levi, S.6
Garcia, E.J.A.7
Beaumont, C.8
Cazzola, M.9
Ferrari, M.10
Cremonesi, L.11
-
19
-
-
78149267378
-
Polymorphism of SERPINE2 gene is associated with pulmonary emphysema in consecutive autopsy cases
-
doi: 10.1186/1471-2350-11-159
-
Fujimoto K, Ikeda S, Arai T, Tanaka N, Kumasaka T, Ishii T, Kida K, Muramatsu M, Sawabe M. 2010. Polymorphism of SERPINE2 gene is associated with pulmonary emphysema in consecutive autopsy cases. BMC Med Genet 11: 159. doi: 10.1186/1471-2350-11-159.
-
(2010)
BMC Med Genet
, vol.11
, pp. 159
-
-
Fujimoto, K.1
Ikeda, S.2
Arai, T.3
Tanaka, N.4
Kumasaka, T.5
Ishii, T.6
Kida, K.7
Muramatsu, M.8
Sawabe, M.9
-
20
-
-
62449175742
-
Genome-wide association study identifies NRG1 as a susceptibility locus for Hirschsprung's disease
-
Garcia-Barcelo MM, Tang CS, Ngan ES, Lui VC, Chen Y, So MT, Leon TY, Miao XP, Shum CK, Liu FQ, et al. 2009. Genome-wide association study identifies NRG1 as a susceptibility locus for Hirschsprung's disease. Proc Natl Acad Sci 106: 2694-2699.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 2694-2699
-
-
Garcia-Barcelo, M.M.1
Tang, C.S.2
Ngan, E.S.3
Lui, V.C.4
Chen, Y.5
So, M.T.6
Leon, T.Y.7
Miao, X.P.8
Shum, C.K.9
Liu, F.Q.10
-
21
-
-
38849197858
-
Structure of the SAM-II riboswitch bound to S-adenosylmethionine
-
DOI 10.1038/nsmb.1371, PII NSMB1371
-
Gilbert SD, Rambo RP, Van Tyne D, Batey RT. 2008. Structure of the SAM-II riboswitch bound to S-adenosylmethionine. Nat Struct Mol Biol 15: 177-182. (Pubitemid 351207508)
-
(2008)
Nature Structural and Molecular Biology
, vol.15
, Issue.2
, pp. 177-182
-
-
Gilbert, S.D.1
Rambo, R.P.2
Van Tyne, D.3
Batey, R.T.4
-
22
-
-
74849111621
-
Identification of intergenic trans-regulatory RNAs containing a disease-linked SNP sequence and targeting cell cycle progression/differentiation pathways in multiple common human disorders
-
Glinskii AB, Ma J, Ma S, Grant D, Lim CU, Sell S, Glinsky GV. 2009. Identification of intergenic trans-regulatory RNAs containing a disease-linked SNP sequence and targeting cell cycle progression/differentiation pathways in multiple common human disorders. Cell Cycle 8: 3925-3942.
-
(2009)
Cell Cycle
, vol.8
, pp. 3925-3942
-
-
Glinskii, A.B.1
Ma, J.2
Ma, S.3
Grant, D.4
Lim, C.U.5
Sell, S.6
Glinsky, G.V.7
-
23
-
-
20444441405
-
Genetic association between polymorphisms in the ADAMTS14 gene and multiple sclerosis
-
DOI 10.1016/j.jneuroim.2005.04.005, PII S0165572805001566
-
Goertsches R, Comabella M, Navarro A, Perkal H, Montalban X. 2005. Genetic association between polymorphisms in the ADAMTS14 gene and multiple sclerosis. J Neuroimmunol 164: 140-147. (Pubitemid 40826772)
-
(2005)
Journal of Neuroimmunology
, vol.164
, Issue.1-2
, pp. 140-147
-
-
Goertsches, R.1
Comabella, M.2
Navarro, A.3
Perkal, H.4
Montalban, X.5
-
24
-
-
13444252847
-
Rfam: Annotating non-coding RNAs in complete genomes
-
DOI 10.1093/nar/gki081
-
Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A. 2005. Rfam: Annotating non-coding RNAs in complete genomes. Nucleic Acids Res 33: D121-D124. (Pubitemid 40207843)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.DATABASE ISS.
-
-
Griffiths-Jones, S.1
Moxon, S.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
Bateman, A.6
-
25
-
-
33750874085
-
From ribosome to riboswitch: Control of gene expression in bacteria by RNA structural rearrangements
-
DOI 10.1080/10409230600914294, PII N30R7131220Q9161
-
Grundy FJ, Henkin TM. 2006. From ribosome to riboswitch: Control of gene expression in bacteria by RNA structural rearrangements. Crit Rev Biochem Mol Biol 41: 329-338. (Pubitemid 44722139)
-
(2006)
Critical Reviews in Biochemistry and Molecular Biology
, vol.41
, Issue.6
, pp. 329-338
-
-
Grundy, F.J.1
Henkin, T.M.2
-
26
-
-
0036600570
-
The accuracy of ribosomal RNA comparative structure models
-
DOI 10.1016/S0959-440X(02)00339-1
-
Gutell RR, Lee JC, Cannone JJ. 2002. The accuracy of ribosomal RNA comparative structure models. Curr Opin Struct Biol 12: 301-310. (Pubitemid 34804611)
-
(2002)
Current Opinion in Structural Biology
, vol.12
, Issue.3
, pp. 301-310
-
-
Gutell, R.R.1
Lee, J.C.2
Cannone, J.J.3
-
27
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M Jr, Jungkamp AC, Munschauer M, et al. 2010a. Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141: 129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
Berninger, P.6
Rothballer, A.7
Ascano Jr., M.8
Jungkamp, A.C.9
Munschauer, M.10
-
28
-
-
80055101895
-
PAR-CliP - A method to identify transcriptome-wide the binding sites of RNA binding proteins
-
doi: 10.3791/2034
-
Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M, Jungkamp AC, Munschauer M, et al. 2010b. PAR-CliP - a method to identify transcriptome-wide the binding sites of RNA binding proteins. J Vis Exp 2010: 2034. doi: 10.3791/2034.
-
(2010)
J Vis Exp
, vol.2010
, pp. 2034
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
Berninger, P.6
Rothballer, A.7
Ascano, M.8
Jungkamp, A.C.9
Munschauer, M.10
-
29
-
-
77956873295
-
Disease-associated mutations that alter the RNA structural ensemble
-
doi: 10.1371/journal.pgen.1001074
-
Halvorsen M, Martin JS, Broadaway S, Laederach A. 2010. Disease-associated mutations that alter the RNA structural ensemble. PLoS Genet 6: e1001074. doi: 10.1371/journal.pgen.1001074.
-
(2010)
PLoS Genet
, vol.6
-
-
Halvorsen, M.1
Martin, J.S.2
Broadaway, S.3
Laederach, A.4
-
30
-
-
16344363338
-
Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%
-
DOI 10.1093/bioinformatics/bti279
-
Havgaard JH, Lyngso RB, Stormo GD, Gorodkin J. 2005. Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%. Bioinformatics 21: 1815-1824. (Pubitemid 40668016)
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 1815-1824
-
-
Havgaard, J.H.1
Lyngso, R.B.2
Stormo, G.D.3
Gorodkin, J.4
-
31
-
-
0026732691
-
Characterization of human brain cDNA encoding the general isoform of β-spectrin
-
Hu RJ, Watanabe M, Bennett V. 1992. Characterization of human brain cDNA encoding the general isoform of β-spectrin. J Biol Chem 267: 18715-18722.
-
(1992)
J Biol Chem
, vol.267
, pp. 18715-18722
-
-
Hu, R.J.1
Watanabe, M.2
Bennett, V.3
-
32
-
-
23344452109
-
Translation termination is involved in histone mRNA degradation when DNA replication is inhibited
-
DOI 10.1128/MCB.25.16.6879-6888.2005
-
Kaygun H, Marzluff WF. 2005. Translation termination is involved in histone mRNA degradation when DNA replication is inhibited. Mol Cell Biol 25: 6879-6888. (Pubitemid 41105889)
-
(2005)
Molecular and Cellular Biology
, vol.25
, Issue.16
, pp. 6879-6888
-
-
Kaygun, H.1
Marzluff, W.F.2
-
33
-
-
75749084420
-
Polymorphisms in the SERPINA1 (Alpha-1-Antitrypsin) gene are associated with severe chronic rhinosinusitis unresponsive to medical therapy
-
Kilty SJ, Bosse Y, Cormier C, Endam LM, Desrosiers MY. 2010. Polymorphisms in the SERPINA1 (Alpha-1-Antitrypsin) gene are associated with severe chronic rhinosinusitis unresponsive to medical therapy. Am J Rhinol Allergy 24: e4-e9.
-
(2010)
Am J Rhinol Allergy
, vol.24
-
-
Kilty, S.J.1
Bosse, Y.2
Cormier, C.3
Endam, L.M.4
Desrosiers, M.Y.5
-
34
-
-
33846504706
-
A "silent" polymorphism in the MDR1 gene changes substrate specificity
-
DOI 10.1126/science.1135308
-
Kimchi-Sarfaty C, Oh JM, Kim IW, Sauna ZE, Calcagno AM, Ambudkar SV, Gottesman MM. 2007. A "silent" polymorphism in the MDR1 gene changes substrate specificity. Science 315: 525-528. (Pubitemid 46175758)
-
(2007)
Science
, vol.315
, Issue.5811
, pp. 525-528
-
-
Kimchi-Sarfaty, C.1
Oh, J.M.2
Kim, I.-W.3
Sauna, Z.E.4
Calcagno, A.M.5
Ambudkar, S.V.6
Gottesman, M.M.7
-
35
-
-
34247345384
-
Coplanar and coaxial orientations of RNA bases and helices
-
DOI 10.1261/rna.381407
-
Laederach A, Chan JM, Schwartzman A, Willgohs E, Altman RB. 2007. Coplanar and coaxial orientations of RNA bases and helices. RNA 13: 643-650. (Pubitemid 46641522)
-
(2007)
RNA
, vol.13
, Issue.5
, pp. 643-650
-
-
Laederach, A.1
Chan, J.M.2
Schwartzman, A.3
Willgohs, E.4
Altman, R.B.5
-
36
-
-
0031767514
-
The K box, a conserved 3' UTR sequence motif, negatively regulates accumulation of Enhancer of split Complex transcripts
-
Lai EC, Burks C, Posakony JW. 1998. The K box, a conserved 3′ UTR sequence motif, negatively regulates accumulation of Enhancer of split Complex transcripts. Development 125: 4077-4088. (Pubitemid 28515445)
-
(1998)
Development
, vol.125
, Issue.20
, pp. 4077-4088
-
-
Lai, E.C.1
Burks, C.2
Posakony, J.W.3
-
37
-
-
0036760665
-
Motif prediction in ribosomal RNAs: Lessons and prospects for automated motif prediction in homologous RNA molecules
-
DOI 10.1016/S0300-9084(02)01463-3, PII S0300908402014633
-
Leontis NB, Stombaugh J, Westhof E. 2002. Motif prediction in ribosomal RNAs Lessons and prospects for automated motif prediction in homologous RNA molecules. Biochimie 84: 961-973. (Pubitemid 35422922)
-
(2002)
Biochimie
, vol.84
, Issue.9
, pp. 961-973
-
-
Leontis, N.B.1
Stombaugh, J.2
Westhof, E.3
-
38
-
-
17844366343
-
Recurrent structural RNA motifs, Isostericity matrices and sequence alignments
-
DOI 10.1093/nar/gki535
-
Lescoute A, Leontis NB, Massire C, Westhof E. 2005. Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments. Nucleic Acids Res 33: 2395-2409. (Pubitemid 41511259)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.8
, pp. 2395-2409
-
-
Lescoute, A.1
Leontis, N.B.2
Massire, C.3
Westhof, E.4
-
39
-
-
79151484424
-
The study of eQTL variations by RNA-seq: From SNPs to phenotypes
-
Majewski J, Pastinen T. 2011. The study of eQTL variations by RNA-seq: From SNPs to phenotypes. Trends Genet 27: 72-79.
-
(2011)
Trends Genet
, vol.27
, pp. 72-79
-
-
Majewski, J.1
Pastinen, T.2
-
40
-
-
3342977915
-
Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization
-
DOI 10.1261/rna.7650904
-
Mathews DH. 2004. Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization. RNA 10: 1178-1190. (Pubitemid 38989004)
-
(2004)
RNA
, vol.10
, Issue.8
, pp. 1178-1190
-
-
Mathews, D.H.1
-
41
-
-
0025264854
-
The equilibrium partition function and base pair binding probabilities for RNA secondary structure
-
McCaskill JS. 1990. The equilibrium partition function and base pair binding probabilities for RNA secondary structure. Biopolymers 29: 1105-1119. (Pubitemid 20145703)
-
(1990)
Biopolymers
, vol.29
, Issue.6-7
, pp. 1105-1119
-
-
McCaskill, J.S.1
-
42
-
-
0025678737
-
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
-
Michel F, Westhof E. 1990. Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J Mol Biol 216: 585-610. (Pubitemid 120037393)
-
(1990)
Journal of Molecular Biology
, vol.216
, Issue.3
, pp. 585-610
-
-
Michel, F.1
Westhof, E.2
-
43
-
-
46349099944
-
High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis
-
doi: 10.1093/nar/gkn267
-
Mitra S, Shcherbakova IV, Altman RB, Brenowitz M, Laederach A. 2008. High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis. Nucleic Acids Res 36: e63. doi: 10.1093/nar/gkn267.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Mitra, S.1
Shcherbakova, I.V.2
Altman, R.B.3
Brenowitz, M.4
Laederach, A.5
-
44
-
-
0036212122
-
The apolipoprotein L gene cluster has emerged recently in evolution and is expressed in human vascular tissue
-
DOI 10.1006/geno.2002.6729
-
Monajemi H, Fontijn RD, Pannekoek H, Horrevoets AJ. 2002. The apolipoprotein L gene cluster has emerged recently in evolution and is expressed in human vascular tissue. Genomics 79: 539-546. (Pubitemid 34274295)
-
(2002)
Genomics
, vol.79
, Issue.4
, pp. 539-546
-
-
Monajemi, H.1
Fontijn, R.D.2
Pannekoek, H.3
Horrevoets, A.J.G.4
-
45
-
-
40749156234
-
Into the post-HapMap era
-
Morton NE. 2008. Into the post-HapMap era. Adv Genet 60: 727-742.
-
(2008)
Adv Genet
, vol.60
, pp. 727-742
-
-
Morton, N.E.1
-
46
-
-
0032712619
-
Limited polymorphism in the HLA-DOA gene
-
Naruse TK, Kawata H, Anzai T, Takashige N, Kagiya M, Nose Y, Nabeya N, Isshiki G, Tatsumi N, Inoko H. 1999. Limited polymorphism in the HLA-DOA gene. Tissue Antigens 53: 359-365.
-
(1999)
Tissue Antigens
, vol.53
, pp. 359-365
-
-
Naruse, T.K.1
Kawata, H.2
Anzai, T.3
Takashige, N.4
Kagiya, M.5
Nose, Y.6
Nabeya, N.7
Isshiki, G.8
Tatsumi, N.9
Inoko, H.10
-
47
-
-
0029418025
-
Statistical properties of DNA sequences
-
Peng CK, Buldyrev SV, Goldberger AL, Havlin S, Mantegna RN, Simons M, Stanley HE. 1995. Statistical properties of DNA sequences. Physica A 221: 180-192.
-
(1995)
Physica A
, vol.221
, pp. 180-192
-
-
Peng, C.K.1
Buldyrev, S.V.2
Goldberger, A.L.3
Havlin, S.4
Mantegna, R.N.5
Simons, M.6
Stanley, H.E.7
-
48
-
-
0032943759
-
UTRdb: A specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs
-
DOI 10.1093/nar/27.1.188
-
Pesole G, Liuni S, Grillo G, Ippedico M, Larizza A, Makalowski W, Saccone C. 1999. UTRdb: A specialized database of 5′ and 3′ untranslated regions of eukaryotic mRNAs. Nucleic Acids Res 27: 188-191. (Pubitemid 29209435)
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.1
, pp. 188-191
-
-
Pesole, G.1
Liuni, S.2
Grillo, G.3
Ippedico, M.4
Larizza, A.5
Makalowski, W.6
Saccone, C.7
-
49
-
-
42949164608
-
Differential Expression of PTEN-Targeting MicroRNAs miR-19a and miR-21 in Cowden Syndrome
-
DOI 10.1016/j.ajhg.2008.04.005, PII S0002929708002656
-
Pezzolesi MG, Platzer P, Waite KA, Eng C. 2008. Differential expression of PTEN-targeting microRNAs miR-19a and miR-21 in Cowden syndrome. Am J Hum Genet 82: 1141-1149. (Pubitemid 351615147)
-
(2008)
American Journal of Human Genetics
, vol.82
, Issue.5
, pp. 1141-1149
-
-
Pezzolesi, M.G.1
Platzer, P.2
Waite, K.A.3
Eng, C.4
-
50
-
-
77952733078
-
Evaluation of the information content of RNA structure mapping data for secondary structure prediction
-
Quarrier S, Martin JS, Davis-Neulander L, Beauregard A, Laederach A. 2010. Evaluation of the information content of RNA structure mapping data for secondary structure prediction. RNA 16: 1108-1117.
-
(2010)
RNA
, vol.16
, pp. 1108-1117
-
-
Quarrier, S.1
Martin, J.S.2
Davis-Neulander, L.3
Beauregard, A.4
Laederach, A.5
-
51
-
-
33845755467
-
Illuminating the silence: Understanding the structure and function of small RNAs
-
DOI 10.1038/nrm2085, PII NRM2085
-
Rana TM. 2007. Illuminating the silence: Understanding the structure and function of small RNAs. Nat Rev Mol Cell Biol 8: 23-36. (Pubitemid 46012012)
-
(2007)
Nature Reviews Molecular Cell Biology
, vol.8
, Issue.1
, pp. 23-36
-
-
Rana, T.M.1
-
52
-
-
84897585709
-
In-line probing analysis of riboswitches
-
Regulski EE, Breaker RR. 2008. In-line probing analysis of riboswitches. Methods Mol Biol 419: 53-67.
-
(2008)
Methods Mol Biol
, vol.419
, pp. 53-67
-
-
Regulski, E.E.1
Breaker, R.R.2
-
53
-
-
79959304412
-
Sharing and archiving nucleic acid structure mapping data
-
Rocca-Serra P, Bellaousov S, Birmingham A, Chen C, Cordero P, Das R, Davis-Neulander L, Duncan CD, Halvorsen M, Knight R, et al. 2011. Sharing and archiving nucleic acid structure mapping data. RNA 17: 1204-1212.
-
(2011)
RNA
, vol.17
, pp. 1204-1212
-
-
Rocca-Serra, P.1
Bellaousov, S.2
Birmingham, A.3
Chen, C.4
Cordero, P.5
Das, R.6
Davis-Neulander, L.7
Duncan, C.D.8
Halvorsen, M.9
Knight, R.10
-
54
-
-
77955468123
-
IGF2BP1, IGF2BP2 and IGF2BP3 genotype, haplotype and genetic model studies in metabolic syndrome traits and diabetes
-
Rodriguez S, Eiriksdottir G, Gaunt TR, Harris TB, Launer LJ, Gudnason V, Day IN. 2010. IGF2BP1, IGF2BP2 and IGF2BP3 genotype, haplotype and genetic model studies in metabolic syndrome traits and diabetes. Growth Horm IGF Res 20: 310-318.
-
(2010)
Growth Horm IGF Res
, vol.20
, pp. 310-318
-
-
Rodriguez, S.1
Eiriksdottir, G.2
Gaunt, T.R.3
Harris, T.B.4
Launer, L.J.5
Gudnason, V.6
Day, I.N.7
-
55
-
-
0035906731
-
Probing the folding landscape of the Tetrahymena ribozyme: Commitment to form the native conformation is late in the folding pathway
-
DOI 10.1006/jmbi.2001.4751
-
Russell R, Herschlag D. 2001. Probing the folding landscape of the Tetrahymena ribozyme: Commitment to form the native conformation is late in the folding pathway. J Mol Biol 308: 839-851. (Pubitemid 32574363)
-
(2001)
Journal of Molecular Biology
, vol.308
, Issue.5
, pp. 839-851
-
-
Russell, R.1
Herschlag, D.2
-
56
-
-
33747349746
-
Iron regulation and the cell cycle: Identification of an iron-responsive element in the 3′-untranslated region of human cell division cycle 14A mRNA by a refined microarray-based screening strategy
-
Sanchez M, Galy B, Dandekar T, Bengert P, Vainshtein Y, Stolte J, Muckenthaler MU, Hentze MW. 2006. Iron regulation and the cell cycle: Identification of an iron-responsive element in the 3′-untranslated region of human cell division cycle 14A mRNA by a refined microarray-based screening strategy. J Biol Chem 281: 22865-22874.
-
(2006)
J Biol Chem
, vol.281
, pp. 22865-22874
-
-
Sanchez, M.1
Galy, B.2
Dandekar, T.3
Bengert, P.4
Vainshtein, Y.5
Stolte, J.6
Muckenthaler, M.U.7
Hentze, M.W.8
-
57
-
-
0033104517
-
Replication-mediated DNA damage by camptothecin induces phosphorylation of RPA by DNA-dependent protein kinase and dissociates RPA:DNA-PK complexes
-
Shao RG, Cao CX, Zhang H, Kohn KW, Wold MS, Pommier Y. 1999. Replication-mediated DNA damage by camptothecin induces phosphorylation of RPA by DNA-dependent protein kinase and dissociates RPA:DNA-PK complexes. EMBO J 18: 1397-1406. (Pubitemid 29110323)
-
(1999)
EMBO Journal
, vol.18
, Issue.5
, pp. 1397-1406
-
-
Shao, R.-G.1
Cao, C.-X.2
Zhang, H.3
Kohn, K.W.4
Wold, M.S.5
Pommier, Y.6
-
58
-
-
0034633940
-
Multiple folding pathways for the P4-P6 RNA domain
-
Silverman SK, Deras ML, Woodson SA, Scaringe SA, Cech TR. 2000. Multiple folding pathways for the P4-P6 RNA domain. Biochemistry 39: 12465-12475.
-
(2000)
Biochemistry
, vol.39
, pp. 12465-12475
-
-
Silverman, S.K.1
Deras, M.L.2
Woodson, S.A.3
Scaringe, S.A.4
Cech, T.R.5
-
59
-
-
41649108293
-
Ligand-dependent folding of the three-way junction in the purine riboswitch
-
DOI 10.1261/rna.736908
-
Stoddard CD, Gilbert SD, Batey RT. 2008. Ligand-dependent folding of the three-way junction in the purine riboswitch. RNA 14: 675-684. (Pubitemid 351480880)
-
(2008)
RNA
, vol.14
, Issue.4
, pp. 675-684
-
-
Stoddard, C.D.1
Gilbert, S.D.2
Batey, R.T.3
-
60
-
-
34548738566
-
Population genomics of human gene expression
-
DOI 10.1038/ng2142, PII NG2142
-
Stranger BE, Nica AC, Forrest MS, Dimas A, Bird CP, Beazley C, Ingle CE, Dunning M, Flicek P, Koller D, et al. 2007. Population genomics of human gene expression. Nat Genet 39: 1217-1224. (Pubitemid 47482691)
-
(2007)
Nature Genetics
, vol.39
, Issue.10
, pp. 1217-1224
-
-
Stranger, B.E.1
Nica, A.C.2
Forrest, M.S.3
Dimas, A.4
Bird, C.P.5
Beazley, C.6
Ingle, C.E.7
Dunning, M.8
Flicek, P.9
Koller, D.10
Montgomery, S.11
Tavare, S.12
Deloukas, P.13
Dermitzakis, E.T.14
-
61
-
-
22044438679
-
Describing RNA structure by libraries of clustered nucleotide doublets
-
DOI 10.1016/j.jmb.2005.06.024, PII S0022283605006741
-
Sykes MT, Levitt M. 2005. Describing RNA structure by libraries of clustered nucleotide doublets. J Mol Biol 351: 26-38. (Pubitemid 40967053)
-
(2005)
Journal of Molecular Biology
, vol.351
, Issue.1
, pp. 26-38
-
-
Sykes, M.T.1
Levitt, M.2
-
62
-
-
35348964057
-
Cowden syndrome-affected patients with PTEN promoter mutations demonstrate abnormal protein translation
-
DOI 10.1086/521051
-
Teresi RE, Zbuk KM, Pezzolesi MG, Waite KA, Eng C. 2007. Cowden syndrome-affected patients with PTEN promoter mutations demonstrate abnormal protein translation. Am J Hum Genet 81: 756-767. (Pubitemid 47596543)
-
(2007)
American Journal of Human Genetics
, vol.81
, Issue.4
, pp. 756-767
-
-
Teresi, R.E.1
Zbuk, K.M.2
Pezzolesi, M.G.3
Waite, K.A.4
Eng, C.5
-
63
-
-
33748367238
-
4-metabolizing genes GTP cyclohydrolase I, 6-pyruvoyl-tetrahydropterin synthase, sepiapterin reductase, carbinolamine-4a-dehydratase, and dihydropteridine reductase
-
DOI 10.1002/humu.20366
-
Thöny B, Blau N. 2006. Mutations in the BH4-metabolizing genes GTP cyclohydrolase I, 6-pyruvoyl-tetrahydropterin synthase, sepiapterin reductase, carbinolamine-4a-dehydratase, and dihydropteridine reductase. Hum Mutat 27: 870-878. (Pubitemid 44336936)
-
(2006)
Human Mutation
, vol.27
, Issue.9
, pp. 870-878
-
-
Thony, B.1
Blau, N.2
-
64
-
-
65449156827
-
Finding non-coding RNAs through genome-scale clustering
-
Tseng HH, Weinberg Z, Gore J, Breaker RR, Ruzzo WL. 2009. Finding non-coding RNAs through genome-scale clustering. J Bioinform Comput Biol 7: 373-388.
-
(2009)
J Bioinform Comput Biol
, vol.7
, pp. 373-388
-
-
Tseng, H.H.1
Weinberg, Z.2
Gore, J.3
Breaker, R.R.4
Ruzzo, W.L.5
-
65
-
-
20444478991
-
Riboswitches as versatile gene control elements
-
DOI 10.1016/j.sbi.2005.05.003, PII S0959440X05000874
-
Tucker BJ, Breaker RR. 2005. Riboswitches as versatile gene control elements. Curr Opin Struct Biol 15: 342-348. (Pubitemid 40826454)
-
(2005)
Current Opinion in Structural Biology
, vol.15
, Issue.3 SPEC. ISS.
, pp. 342-348
-
-
Tucker, B.J.1
Breaker, R.R.2
-
66
-
-
34250804011
-
Predicting helical coaxial stacking in RNA multibranch loops
-
DOI 10.1261/rna.305307
-
Tyagi R, Mathews DH. 2007. Predicting helical coaxial stacking in RNA multibranch loops. RNA 13: 939-951. (Pubitemid 46984886)
-
(2007)
RNA
, vol.13
, Issue.7
, pp. 939-951
-
-
Tyagi, R.1
Mathews, D.H.2
-
67
-
-
52949152433
-
ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis
-
Vasa SM, Guex N, Wilkinson KA, Weeks KM, Giddings MC. 2008. ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis. RNA 14: 1979-1990.
-
(2008)
RNA
, vol.14
, pp. 1979-1990
-
-
Vasa, S.M.1
Guex, N.2
Wilkinson, K.A.3
Weeks, K.M.4
Giddings, M.C.5
-
68
-
-
34248222805
-
Computing the partition function and sampling for saturated secondary structures of RNA, with respect to the turner energy model
-
DOI 10.1089/cmb.2006.0012
-
Waldispuhl J, Clote P. 2007. Computing the partition function and sampling for saturated secondary structures of RNA, with respect to the Turner energy model. J Comput Biol 14: 190-215. (Pubitemid 46709354)
-
(2007)
Journal of Computational Biology
, vol.14
, Issue.2
, pp. 190-215
-
-
Waldispuhl, J.1
Clote, P.2
Sachs, R.3
-
69
-
-
43149103175
-
Dissecting RNA folding by nucleotide analog interference mapping (NAIM)
-
DOI 10.1038/nprot.2008.45, PII NPROT.2008.45
-
Waldsich C. 2008. Dissecting RNA folding by nucleotide analog interference mapping (NAIM). Nat Protoc 3: 811-823. (Pubitemid 351639025)
-
(2008)
Nature Protocols
, vol.3
, Issue.5
, pp. 811-823
-
-
Waldsich, C.1
-
70
-
-
40849147457
-
Riboswitches that Sense S-adenosylhomocysteine and Activate Genes Involved in Coenzyme Recycling
-
DOI 10.1016/j.molcel.2008.01.012, PII S1097276508001196
-
Wang JX, Lee ER, Morales DR, Lim J, Breaker RR. 2008a. Riboswitches that sense S-adenosylhomocysteine and activate genes involved in coenzyme recycling. Mol Cell 29: 691-702. (Pubitemid 351400921)
-
(2008)
Molecular Cell
, vol.29
, Issue.6
, pp. 691-702
-
-
Wang, J.X.1
Lee, E.R.2
Morales, D.R.3
Lim, J.4
Breaker, R.R.5
-
71
-
-
57049152936
-
Evidence of a novel RNA secondary structure in the coding region of HIV-1 pol gene
-
Wang Q, Barr I, Guo F, Lee C. 2008b. Evidence of a novel RNA secondary structure in the coding region of HIV-1 pol gene. RNA 14: 2478-2488.
-
(2008)
RNA
, vol.14
, pp. 2478-2488
-
-
Wang, Q.1
Barr, I.2
Guo, F.3
Lee, C.4
-
72
-
-
1342268048
-
Cooperativity in two-state protein folding kinetics
-
DOI 10.1110/ps.03403604
-
Weikl TR, Palassini M, Dill KA. 2004. Cooperativity in two-state protein folding kinetics. Protein Sci 13: 822-829. (Pubitemid 38252578)
-
(2004)
Protein Science
, vol.13
, Issue.3
, pp. 822-829
-
-
Weikl, T.R.1
Palassini, M.2
Dill, K.A.3
-
73
-
-
34547873145
-
Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline
-
DOI 10.1093/nar/gkm487
-
Weinberg Z, Barrick JE, Yao Z, Roth A, Kim JN, Gore J, Wang JX, Lee ER, Block KF, Sudarsan N, et al. 2007. Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline. Nucleic Acids Res 35: 4809-4819. (Pubitemid 47250352)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.14
, pp. 4809-4819
-
-
Weinberg, Z.1
Barrick, J.E.2
Yao, Z.3
Roth, A.4
Kim, J.N.5
Gore, J.6
Wang, J.X.7
Lee, E.R.8
Block, K.F.9
Sudarsan, N.10
Neph, S.11
Tompa, M.12
Ruzzo, W.L.13
Breaker, R.R.14
-
75
-
-
33947720028
-
Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution
-
Wilkinson KA, Merino EJ, Weeks KM. 2006. Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution. Nat Protoc 1: 1610-1616.
-
(2006)
Nat Protoc
, vol.1
, pp. 1610-1616
-
-
Wilkinson, K.A.1
Merino, E.J.2
Weeks, K.M.3
-
76
-
-
40849123031
-
High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states
-
doi: 10.1371/journal.pbio.0060096
-
Wilkinson KA, Gorelick RJ, Vasa SM, Guex N, Rein A, Mathews DH, Giddings MC, Weeks KM. 2008. High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states. PLoS Biol 6: e96. doi: 10.1371/journal.pbio.0060096.
-
(2008)
PLoS Biol
, vol.6
-
-
Wilkinson, K.A.1
Gorelick, R.J.2
Vasa, S.M.3
Guex, N.4
Rein, A.5
Mathews, D.H.6
Giddings, M.C.7
Weeks, K.M.8
-
77
-
-
67649371451
-
Influence of nucleotide identity on ribose 2′-hydroxyl reactivity in RNA
-
Wilkinson KA, Vasa SM, Deigan KE, Mortimer SA, Giddings MC, Weeks KM. 2009. Influence of nucleotide identity on ribose 2′-hydroxyl reactivity in RNA. RNA 5: 1314-1321.
-
(2009)
RNA
, vol.5
, pp. 1314-1321
-
-
Wilkinson, K.A.1
Vasa, S.M.2
Deigan, K.E.3
Mortimer, S.A.4
Giddings, M.C.5
Weeks, K.M.6
-
78
-
-
0035913953
-
Molecular characterization of h-l(3)mbt-like: A new member of the human mbt family
-
DOI 10.1016/S0014-5793(01)02959-3, PII S0014579301029593
-
Wismar J. 2001. Molecular characterization of h-l(3)mbt-like: A new member of the human mbt family. FEBS Lett 507: 119-121. (Pubitemid 33000309)
-
(2001)
FEBS Letters
, vol.507
, Issue.1
, pp. 119-121
-
-
Wismar, J.1
-
80
-
-
77957738825
-
The p400 ATPase regulates nucleosome stability and chromatin ubiquitination during DNA repair
-
Xu Y, Sun Y, Jiang X, Ayrapetov MK, Moskwa P, Yang S, Weinstock DM, Price BD. 2010. The p400 ATPase regulates nucleosome stability and chromatin ubiquitination during DNA repair. J Cell Biol 191: 31-43.
-
(2010)
J Cell Biol
, vol.191
, pp. 31-43
-
-
Xu, Y.1
Sun, Y.2
Jiang, X.3
Ayrapetov, M.K.4
Moskwa, P.5
Yang, S.6
Weinstock, D.M.7
Price, B.D.8
-
81
-
-
32544452741
-
CMfinder - A covariance model based RNA motif finding algorithm
-
DOI 10.1093/bioinformatics/btk008
-
Yao Z, Weinberg Z, Ruzzo WL. 2006. CMfinder - a covariance model based RNA motif finding algorithm. Bioinformatics 22: 445-452. (Pubitemid 43231419)
-
(2006)
Bioinformatics
, vol.22
, Issue.4
, pp. 445-452
-
-
Yao, Z.1
Weinberg, Z.2
Ruzzo, W.L.3
|