Loop-mediated amplification accelerated by stem primers

International Journal of Molecular Sciences

Volumn 12, Issue 12, 2011, Pages 9108-9124

  Gandelman, Olga ^a   Jackson, Rebecca ^a   Kiddle, Guy ^a   Tisi, Laurence ^a  

^a Cambridgeshire Business Park   (United Kingdom)

Author keywords

Clostridium difficile; HIV; In vitro diagnostics; Isothermal amplification; Listeria monocytogenes; Loop mediated amplification; Stem primers

Indexed keywords

GENOMIC DNA; PLASMID DNA; PRIMER DNA; BACTERIAL DNA; BACTERIAL TOXIN; DNA;

ARTICLE; BACTERIUM IDENTIFICATION; CLOSTRIDIUM DIFFICILE; CONTROLLED STUDY; COPY NUMBER VARIATION; DNA SEQUENCE; HUMAN IMMUNODEFICIENCY VIRUS; LISTERIA MONOCYTOGENES; LOOP MEDIATED ISOTHERMAL AMPLIFICATION; MOLECULAR DYNAMICS; MOLECULAR INTERACTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PROCESS DEVELOPMENT; PROCESS OPTIMIZATION; QUALITATIVE ANALYSIS; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; REPRODUCIBILITY; SENSITIVITY ANALYSIS; SEQUENCE ANALYSIS; VALIDATION PROCESS; ALGORITHM; CHEMISTRY; GENETICS; PEPTOCLOSTRIDIUM DIFFICILE; POLYMERASE CHAIN REACTION; PROCEDURES;

ALGORITHMS; BACTERIAL TOXINS; CLOSTRIDIUM DIFFICILE; DNA; DNA PRIMERS; DNA, BACTERIAL; LISTERIA MONOCYTOGENES; POLYMERASE CHAIN REACTION;

EID: 84055191049     PISSN: None     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms12129108     Document Type: Article

References (11)

1. Lucchi, N.W.; Demas, A.; Narayanan, J.; Sumari, D.; Kabanywanyi, A.; Kachur, S.P.; Barnwell, J.W.; Udhayakumar, V. Real-time fluorescence loop mediated isothermal amplification for the diagnosis of malaria. PLoS One 2010, 5, e13733.
2. Curtis, K.A.; Rudolph, D.L.; Owen, S.M. Sequence-specific detection method for reverse transcription loop-mediated amplification of LM-1. J. Med. Virol. 2009, 81, 966-972.
3. Techathuvanan, C.; Draughon, F.A.; D'Souza, D.H. Comparison of reverse transcriptase PCR, reverse transcriptase loop-mediated isothermal amplification, and culture-based assays for Salmonella detection from pork processing environments. J. Food Protection 2011, 74, 294-301.
4. Wang, L.; Li, Y.; Chu, J.; Xu, Z.; Zhong, Q. Development and application of a simple loop-mediated isothermal amplification method on rapid detection of Listeria monocytogenes strains. Mol. Biol. Rep. 2011, 39, 445-449.
5. Gandelman, O.A.; Church, V.L.; Moore, C.A.; Kiddle, G.; Carne, C.A.; Parmar, S.; Jalal, H.; Tisi, L.C.; Murray, J.A.H. Novel bioluminescent quantitative detection of nucleic acid amplification in real-time. PLoS One 2010, 5, e14155.
6. Niemz, A.; Ferguson, T.M.; Boyle, D.S. Point-of-care nucleic acid testing for infectious diseases. Trends Biotechnol. 2011, 29, 240-250.
7. Notomi, T.; Okayama, H.; Masubuchi, H. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 2000, 28, e63.
8. Nagamine, K.; Hase, T.; Notomi, T. Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol. Cell. Probes 2002, 16, 223-229.
9. Notomi, T; Hase, T. Process for synthesizing nucleic acid. Patent WO 2000/028082, 18 May 2000.
10. Coyle, K.; Elagin, S.; Kraft, J.; Deng, X.K. Reactivity of Clostridium difficile toxinotypes with the illumigene™ Clostridium difficile molecular assay. Presented at 110th General Meeting of the American Society for Microbiology, San Diego, CA, USA, 23-27 May 2010. http://www.meridianbioscience.com/Content/Assets/Files/2.1%20%20C.%20difficile%20Products/illumigene%20C.%20difficile/illumigene%20technology%20page/ASM_Abstract_2.pdf (accessed on 7 December 2011).
11. Manual to LAMP primer designing software PrimerExplorer, 2011, Eiken Genome Site. http://primerexplorer.jp/e/v4_manual/img/03_ch01.gif (accessed on 7 December 2011).