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Volumn 88, Issue 1, 2012, Pages 134-139

Rapid and high resolution genotyping of all Escherichia coli serotypes using 10 genomic repeat-containing loci

Author keywords

Capillary electrophoresis; Escherichia coli; Genotyping; MLVA; VNTR

Indexed keywords

ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; CONTROLLED STUDY; ESCHERICHIA COLI; GENE LOCUS; GENETIC POLYMORPHISM; GENETIC PROCEDURES; GENOTYPE; INTERMETHOD COMPARISON; MULTIPLE LOCUS VARIABLE NUMBER TANDEM REPEATS ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPTICAL RESOLUTION; PRIORITY JOURNAL; PROCESS DEVELOPMENT; PULSED FIELD GEL ELECTROPHORESIS; SEROTYPE; VARIABLE NUMBER OF TANDEM REPEAT;

EID: 83955161116     PISSN: 01677012     EISSN: 18728359     Source Type: Journal    
DOI: 10.1016/j.mimet.2011.11.003     Document Type: Article
Times cited : (57)

References (30)
  • 1
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: a program to analyze DNA sequences
    • Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999, 27:573-580.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 573-580
    • Benson, G.1
  • 2
    • 80051804184 scopus 로고    scopus 로고
    • Characterisation of the Escherichia coli strain associated with an outbreak of haemolytic uraemic syndrome in Germany: a microbiological study. [online early], 2011
    • Bielaszewska, M., Mellmann, A., Zhang, W., Kock, R., Fruth, A., Bauwens, A., et al., 2011 Characterisation of the Escherichia coli strain associated with an outbreak of haemolytic uraemic syndrome in Germany, 2011: a microbiological study. Lancet Infect. Dis. [online early].
    • (2011) Lancet Infect. Dis.
    • Bielaszewska, M.1    Mellmann, A.2    Zhang, W.3    Kock, R.4    Fruth, A.5    Bauwens, A.6
  • 3
    • 34447644810 scopus 로고    scopus 로고
    • CRISPR recognition tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats
    • Bland C., Ramsey T.L., Sabree F., Lowe M., Brown K., Kyrpides N.C., et al. CRISPR recognition tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats. BMC Bioinformatics 2007, 8:209.
    • (2007) BMC Bioinformatics , vol.8 , pp. 209
    • Bland, C.1    Ramsey, T.L.2    Sabree, F.3    Lowe, M.4    Brown, K.5    Kyrpides, N.C.6
  • 4
    • 33846480030 scopus 로고    scopus 로고
    • Octaplex PCR and fluorescence-based capillary electrophoresis for identification of human diarrheagenic Escherichia coli and Shigella spp.
    • Brandal L.T., Lindstedt B.A., Aas L., Stavnes T.L., Lassen J., Kapperud G. Octaplex PCR and fluorescence-based capillary electrophoresis for identification of human diarrheagenic Escherichia coli and Shigella spp. J. Microbiol. Methods 2007, 68:331-341.
    • (2007) J. Microbiol. Methods , vol.68 , pp. 331-341
    • Brandal, L.T.1    Lindstedt, B.A.2    Aas, L.3    Stavnes, T.L.4    Lassen, J.5    Kapperud, G.6
  • 5
    • 82355173436 scopus 로고    scopus 로고
    • Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC). Arch Microbiol. [online early].
    • Brzuszkiewicz, E., Thurmer, A., Schuldes, J., Leimbach, A., Liesegang, H., Meyer, F.D., et al., 2011. Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC). Arch Microbiol. [online early].
    • (2011)
    • Brzuszkiewicz, E.1    Thurmer, A.2    Schuldes, J.3    Leimbach, A.4    Liesegang, H.5    Meyer, F.D.6
  • 6
    • 77950458654 scopus 로고    scopus 로고
    • Genetic diversity of O157:H7 and non-O157 verocytotoxigenic Escherichia coli from Argentina inferred from multiple-locus variable-number tandem repeat analysis (MLVA)
    • Bustamante A.V., Sanso A.M., Lucchesi P.M., Parma A.E. Genetic diversity of O157:H7 and non-O157 verocytotoxigenic Escherichia coli from Argentina inferred from multiple-locus variable-number tandem repeat analysis (MLVA). Int. J. Med. Microbiol. 2010, 300:212-217.
    • (2010) Int. J. Med. Microbiol. , vol.300 , pp. 212-217
    • Bustamante, A.V.1    Sanso, A.M.2    Lucchesi, P.M.3    Parma, A.E.4
  • 7
    • 79960472916 scopus 로고    scopus 로고
    • MLVA is a valuable tool in epidemiological investigations of Escherichia coli and for disclosing multiple carriage
    • [online early].
    • Christiansson, M., Melin, S., Matussek, A., Lofgren, S., Soderman, J., 2011. MLVA is a valuable tool in epidemiological investigations of Escherichia coli and for disclosing multiple carriage. Scand J Infect. Dis. [online early].
    • (2011) Scand J Infect. Dis.
    • Christiansson, M.1    Melin, S.2    Matussek, A.3    Lofgren, S.4    Soderman, J.5
  • 8
    • 0033775633 scopus 로고    scopus 로고
    • Rapid and simple determination of the Escherichia coli phylogenetic group
    • Clermont O., Bonacorsi S., Bingen E. Rapid and simple determination of the Escherichia coli phylogenetic group. Appl. Environ. Microbiol. 2000, 66:4555-4558.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4555-4558
    • Clermont, O.1    Bonacorsi, S.2    Bingen, E.3
  • 9
    • 33749383917 scopus 로고    scopus 로고
    • Identification of forces shaping the commensal Escherichia coli genetic structure by comparing animal and human isolates
    • Escobar-Paramo P., Le Menac'h A., Le Gall T., Amorin C., Gouriou S., Picard B., et al. Identification of forces shaping the commensal Escherichia coli genetic structure by comparing animal and human isolates. Environ. Microbiol. 2006, 8:1975-1984.
    • (2006) Environ. Microbiol. , vol.8 , pp. 1975-1984
    • Escobar-Paramo, P.1    Le Menac'h, A.2    Le Gall, T.3    Amorin, C.4    Gouriou, S.5    Picard, B.6
  • 10
    • 80053267567 scopus 로고    scopus 로고
    • Genetic Characterization of Non-O157 Verocytotoxigenic Escherichia coli Isolated from Raw Beef Products Using Multiple-Locus Variable-Number Tandem Repeat Analysis
    • [online early].
    • Franci, T., Sanso, A.M., Bustamante, A.V., Lucchesi, P.M., Parma, A.E., 2011. Genetic Characterization of Non-O157 Verocytotoxigenic Escherichia coli Isolated from Raw Beef Products Using Multiple-Locus Variable-Number Tandem Repeat Analysis. Foodborne. Pathog. Dis. [online early].
    • (2011) Foodborne. Pathog. Dis.
    • Franci, T.1    Sanso, A.M.2    Bustamante, A.V.3    Lucchesi, P.M.4    Parma, A.E.5
  • 11
    • 80955168000 scopus 로고    scopus 로고
    • N. Engl. J Med.
    • Epidemic Profile of Shiga-Toxin-Producing Escherichia coli O104:H4 Outbreak in Germany - Preliminary Report, [online early].
    • Frank, C., Werber, D., Cramer, J.P., Askar, M., Faber, M., Heiden, M.A., et al., 2011. Epidemic Profile of Shiga-Toxin-Producing Escherichia coli O104:H4 Outbreak in Germany - Preliminary Report. N. Engl. J Med. [online early].
    • (2011)
    • Frank, C.1    Werber, D.2    Cramer, J.P.3    Askar, M.4    Faber, M.5    Heiden, M.A.6
  • 13
    • 30744432410 scopus 로고    scopus 로고
    • Association of virulence genotype with phylogenetic background in comparison to different seropathotypes of Shiga toxin-producing Escherichia coli isolates
    • Girardeau J.P., Dalmasso A., Bertin Y., Ducrot C., Bord S., Livrelli V., et al. Association of virulence genotype with phylogenetic background in comparison to different seropathotypes of Shiga toxin-producing Escherichia coli isolates. J. Clin. Microbiol. 2005, 43:6098-6107.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 6098-6107
    • Girardeau, J.P.1    Dalmasso, A.2    Bertin, Y.3    Ducrot, C.4    Bord, S.5    Livrelli, V.6
  • 14
    • 77953351486 scopus 로고    scopus 로고
    • Shiga toxin-producing Escherichia coli (STEC)
    • Hunt J.M. Shiga toxin-producing Escherichia coli (STEC). Clin. Lab. Med. 2010, 30:21-45.
    • (2010) Clin. Lab. Med. , vol.30 , pp. 21-45
    • Hunt, J.M.1
  • 15
    • 34648819791 scopus 로고    scopus 로고
    • Relationship between phylogenetic groups, genotypic clusters, and virulence gene profiles of Escherichia coli strains from diverse human and animal sources
    • Ishii S., Meyer K.P., Sadowsky M.J. Relationship between phylogenetic groups, genotypic clusters, and virulence gene profiles of Escherichia coli strains from diverse human and animal sources. Appl. Environ. Microbiol. 2007, 73:5703-5710.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5703-5710
    • Ishii, S.1    Meyer, K.P.2    Sadowsky, M.J.3
  • 17
    • 16444380292 scopus 로고    scopus 로고
    • Highly diverse variable number tandem repeat loci in the E. coli O157:H7 and O55:H7 genomes for high-resolution molecular typing
    • Keys C., Kemper S., Keim P. Highly diverse variable number tandem repeat loci in the E. coli O157:H7 and O55:H7 genomes for high-resolution molecular typing. J. Appl. Microbiol. 2005, 98:928-940.
    • (2005) J. Appl. Microbiol. , vol.98 , pp. 928-940
    • Keys, C.1    Kemper, S.2    Keim, P.3
  • 18
    • 76749124615 scopus 로고    scopus 로고
    • Development of a new nomenclature for Salmonella typhimurium multilocus variable number of tandem repeats analysis (MLVA)
    • Larsson J.T., Torpdahl M., Petersen R.F., Sorensen G., Lindstedt B.A., Nielsen E.M. Development of a new nomenclature for Salmonella typhimurium multilocus variable number of tandem repeats analysis (MLVA). Euro Surveill. 2009, 14.
    • (2009) Euro Surveill. , vol.14
    • Larsson, J.T.1    Torpdahl, M.2    Petersen, R.F.3    Sorensen, G.4    Lindstedt, B.A.5    Nielsen, E.M.6
  • 19
    • 33947268809 scopus 로고    scopus 로고
    • Study of polymorphic variable-number of tandem repeats loci in the ECOR collection and in a set of pathogenic Escherichia coli and Shigella isolates for use in a genotyping assay
    • Lindstedt B.A., Brandal L.T., Aas L., Vardund T., Kapperud G. Study of polymorphic variable-number of tandem repeats loci in the ECOR collection and in a set of pathogenic Escherichia coli and Shigella isolates for use in a genotyping assay. J. Microbiol. Methods 2007, 69:197-205.
    • (2007) J. Microbiol. Methods , vol.69 , pp. 197-205
    • Lindstedt, B.A.1    Brandal, L.T.2    Aas, L.3    Vardund, T.4    Kapperud, G.5
  • 20
    • 78149470831 scopus 로고    scopus 로고
    • Comparison of 61 sequenced Escherichia coli genomes
    • Lukjancenko O., Wassenaar T.M., Ussery D.W. Comparison of 61 sequenced Escherichia coli genomes. Microb. Ecol. 2010, 60:708-720.
    • (2010) Microb. Ecol. , vol.60 , pp. 708-720
    • Lukjancenko, O.1    Wassenaar, T.M.2    Ussery, D.W.3
  • 21
    • 75149189181 scopus 로고    scopus 로고
    • Evaluation of multiple-locus variable number of tandem-repeats analysis (MLVA) as a method for identification of clonal groups among enteropathogenic, enterohaemorrhagic and avirulent Escherichia coli O26 strains
    • Miko A., Lindstedt B.A., Brandal L.T., Lobersli I., Beutin L. Evaluation of multiple-locus variable number of tandem-repeats analysis (MLVA) as a method for identification of clonal groups among enteropathogenic, enterohaemorrhagic and avirulent Escherichia coli O26 strains. FEMS Microbiol. Lett. 2010, 303:137-146.
    • (2010) FEMS Microbiol. Lett. , vol.303 , pp. 137-146
    • Miko, A.1    Lindstedt, B.A.2    Brandal, L.T.3    Lobersli, I.4    Beutin, L.5
  • 22
    • 79952365868 scopus 로고    scopus 로고
    • The CTX-M conundrum: dissemination of plasmids and Escherichia coli clones
    • Naseer U., Sundsfjord A. The CTX-M conundrum: dissemination of plasmids and Escherichia coli clones. Microb. Drug Resist. 2011, 17:83-97.
    • (2011) Microb. Drug Resist. , vol.17 , pp. 83-97
    • Naseer, U.1    Sundsfjord, A.2
  • 23
    • 77954879314 scopus 로고    scopus 로고
    • Extended-spectrum [beta]-lactamase producing Escherichia coli: changing epidemiology and clinical impact
    • Oteo J., Perez-Vazquez M., Campos J. Extended-spectrum [beta]-lactamase producing Escherichia coli: changing epidemiology and clinical impact. Curr. Opin. Infect. Dis. 2010, 23:320-326.
    • (2010) Curr. Opin. Infect. Dis. , vol.23 , pp. 320-326
    • Oteo, J.1    Perez-Vazquez, M.2    Campos, J.3
  • 24
    • 79959679433 scopus 로고    scopus 로고
    • Characteristics of the enteroaggregative Shiga toxin/verotoxin-producing Escherichia coli O104:H4 strain causing the outbreak of haemolytic uraemic syndrome in Germany, May to June 2011
    • Scheutz F., Moller N.E., Frimodt-Moller J., Boisen N., Morabito S., Tozzoli R., et al. Characteristics of the enteroaggregative Shiga toxin/verotoxin-producing Escherichia coli O104:H4 strain causing the outbreak of haemolytic uraemic syndrome in Germany, May to June 2011. Euro Surveill. 2011, 16.
    • (2011) Euro Surveill. , vol.16
    • Scheutz, F.1    Moller, N.E.2    Frimodt-Moller, J.3    Boisen, N.4    Morabito, S.5    Tozzoli, R.6
  • 25
    • 42649098980 scopus 로고    scopus 로고
    • Outbreak of haemolytic uraemic syndrome in Norway caused by stx2-positive Escherichia coli O103:H25 traced to cured mutton sausages
    • Schimmer B., Nygard K., Eriksen H.M., Lassen J., Lindstedt B.A., Brandal L.T., et al. Outbreak of haemolytic uraemic syndrome in Norway caused by stx2-positive Escherichia coli O103:H25 traced to cured mutton sausages. BMC Infect. Dis. 2008, 8:41.
    • (2008) BMC Infect. Dis. , vol.8 , pp. 41
    • Schimmer, B.1    Nygard, K.2    Eriksen, H.M.3    Lassen, J.4    Lindstedt, B.A.5    Brandal, L.T.6


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