-
1
-
-
4644309196
-
The functions of animal microRNAs
-
Ambros, V. (2004). The functions of animal microRNAs. Nature 431, 350-355.
-
(2004)
Nature
, vol.431
, pp. 350-355
-
-
Ambros, V.1
-
2
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel, D. P. (2004). MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116, 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
3
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
Bartel, D. P. (2009). MicroRNAs: Target recognition and regulatory functions. Cell 136, 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
4
-
-
26944498633
-
Prediction and validation of miRNAs and their targets
-
Bentwich, I. (2005). Prediction and validation of miRNAs and their targets. FEBS Letters 579, 5904-5910.
-
(2005)
FEBS Letters
, vol.579
, pp. 5904-5910
-
-
Bentwich, I.1
-
5
-
-
33751548288
-
Diversity of microRNAs in human and chimpanzee brain
-
Berezikov, E., Thuemmler, F., van Laake, L. W., Kondova, I., Bontrop, R., Cuppen, E., and Plasterk, R. H. A. (2006). Diversity of microRNAs in human and chimpanzee brain. Nature Genetics 38, 1375-1377.
-
(2006)
Nature Genetics
, vol.38
, pp. 1375-1377
-
-
Berezikov, E.1
Thuemmler, F.2
van Laake, L.W.3
Kondova, I.4
Bontrop, R.5
Cuppen, E.6
Plasterk, R.H.A.7
-
6
-
-
33947273235
-
Discrete small RNA-generating loci as master regulators of transposon activity inDrosophila
-
Brennecke, J., Aravin, A. A., Stark, A., Dus, M., Kellis, M., Sachidanandam, R., and Hannon, G. J. (2007). Discrete small RNA-generating loci as master regulators of transposon activity inDrosophila. Cell 128, 1089-1103.
-
(2007)
Cell
, vol.128
, pp. 1089-1103
-
-
Brennecke, J.1
Aravin, A.A.2
Stark, A.3
Dus, M.4
Kellis, M.5
Sachidanandam, R.6
Hannon, G.J.7
-
8
-
-
75249084378
-
The GNUMAP algorithm: Unbiased probabilistic mapping of oligonucleotides from next-generation sequencing
-
Clement, N. L., Snell, Q., Clement, M. J., Hollenhorst, P. C., Purwar, J., Graves, B. J., Cairns, B. R., and Johnson, W. E. (2010). The GNUMAP algorithm: Unbiased probabilistic mapping of oligonucleotides from next-generation sequencing. Bioinformatics 26, 38-45.
-
(2010)
Bioinformatics
, vol.26
, pp. 38-45
-
-
Clement, N.L.1
Snell, Q.2
Clement, M.J.3
Hollenhorst, P.C.4
Purwar, J.5
Graves, B.J.6
Cairns, B.R.7
Johnson, W.E.8
-
9
-
-
10944254152
-
Transcription and processing of human microRNA precursors
-
Cullen, B. R. (2004). Transcription and processing of human microRNA precursors. Molecular Cell 16, 861-865.
-
(2004)
Molecular Cell
, vol.16
, pp. 861-865
-
-
Cullen, B.R.1
-
10
-
-
8344234215
-
How do RNA folding algorithms work
-
Eddy, S. R. (2004). How do RNA folding algorithms work Nature Biotechnology 22, 1457-1458.
-
(2004)
Nature Biotechnology
, vol.22
, pp. 1457-1458
-
-
Eddy, S.R.1
-
11
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
Friedlander, M. R., Chen, W., Adamidi, C., Maaskola, J., Einspanier, R., Knespel, S., and Rajewsky, N. (2008). Discovering microRNAs from deep sequencing data using miRDeep. Nature Biotechnology 26, 407-415.
-
(2008)
Nature Biotechnology
, vol.26
, pp. 407-415
-
-
Friedlander, M.R.1
Chen, W.2
Adamidi, C.3
Maaskola, J.4
Einspanier, R.5
Knespel, S.6
Rajewsky, N.7
-
12
-
-
33745336617
-
A germline-specific class of small RNAs binds mammalian Piwi proteins
-
Girard, A., Sachidanandam, R., Hannon, G. J., and Carmell, M. A. (2006). A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature 442, 199-202.
-
(2006)
Nature
, vol.442
, pp. 199-202
-
-
Girard, A.1
Sachidanandam, R.2
Hannon, G.J.3
Carmell, M.A.4
-
13
-
-
0347755643
-
The microRNA Registry
-
Database Issue
-
Griffiths-Jones, S. (2004). The microRNA Registry. Nucleic Acids Research 32(Database Issue), D109-D111.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Griffiths-Jones, S.1
-
15
-
-
0038825783
-
Computational identification ofDrosophilamicroRNA genes
-
Lai, E. C., Tomancak, P., Williams, R. W., and Rubin, G. M. (2003). Computational identification ofDrosophilamicroRNA genes. Genome Biology 4, 1-20.
-
(2003)
Genome Biology
, vol.4
, pp. 1-20
-
-
Lai, E.C.1
Tomancak, P.2
Williams, R.W.3
Rubin, G.M.4
-
16
-
-
0141843656
-
The nuclear RNase III Drosha initiates microRNA processing
-
Lee, Y., Ahn, C., Han, J., Choi, H., Kim, J., Yim, J., Lee, J., Provost, P., Radmark, O., Kim, S., and Kim, V. N. (2003). The nuclear RNase III Drosha initiates microRNA processing. Nature 425, 415-419.
-
(2003)
Nature
, vol.425
, pp. 415-419
-
-
Lee, Y.1
Ahn, C.2
Han, J.3
Choi, H.4
Kim, J.5
Yim, J.6
Lee, J.7
Provost, P.8
Radmark, O.9
Kim, S.10
Kim, V.N.11
-
17
-
-
0037423845
-
Vertebrate microRNA genes
-
Lim, L. P., Glasner, M. E., Yekta, S., Burge, C. B., and Bartel, D. P. (2003). Vertebrate microRNA genes. Science 299, 1540.
-
(2003)
Science
, vol.299
, pp. 1540
-
-
Lim, L.P.1
Glasner, M.E.2
Yekta, S.3
Burge, C.B.4
Bartel, D.P.5
-
18
-
-
0037447334
-
The microRNAs ofCaenorhabditis elegans
-
Lim, L. P., Lau, N. C., Weinstein, E. G., Abdelhakim, A., Yekta, S., Rhoades, M. W., Burge, C. B., and Bartel, D. P. (2003). The microRNAs ofCaenorhabditis elegans. Genes and Development 17, 991-1008.
-
(2003)
Genes and Development
, vol.17
, pp. 991-1008
-
-
Lim, L.P.1
Lau, N.C.2
Weinstein, E.G.3
Abdelhakim, A.4
Yekta, S.5
Rhoades, M.W.6
Burge, C.B.7
Bartel, D.P.8
-
19
-
-
0000251971
-
Maximum likelihood estimation via the ECM algorithm: A general framework
-
Meng, X. L. and Rubin, D. B. (1993). Maximum likelihood estimation via the ECM algorithm: A general framework. Biometrika 80, 267-278.
-
(1993)
Biometrika
, vol.80
, pp. 267-278
-
-
Meng, X.L.1
Rubin, D.B.2
-
21
-
-
41649106136
-
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
-
Morin, R. D., O'Connor, M. D., Griffith, M., Kuchenbauer, F., Delaney, A., Prabhu, A.-L., Zhao, Y., McDonald, H., Zeng, T., Hirst, M., Eaves, C. J., and Marra, M. A. (2008). Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Research 18, 610-621.
-
(2008)
Genome Research
, vol.18
, pp. 610-621
-
-
Morin, R.D.1
O'Connor, M.D.2
Griffith, M.3
Kuchenbauer, F.4
Delaney, A.5
Prabhu, A.-L.6
Zhao, Y.7
McDonald, H.8
Zeng, T.9
Hirst, M.10
Eaves, C.J.11
Marra, M.A.12
-
22
-
-
0002213113
-
Algorithms for loop matchings
-
Nussinov, R., Pieczenik, G., Griggs, J. R., and Kleitman, D. J. (1978). Algorithms for loop matchings. SIAM Journal of Applied Mathematics 35, 68-82.
-
(1978)
SIAM Journal of Applied Mathematics
, vol.35
, pp. 68-82
-
-
Nussinov, R.1
Pieczenik, G.2
Griggs, J.R.3
Kleitman, D.J.4
-
23
-
-
33846527241
-
Distinct populations of primary and secondary effectors during RNAi inC. elegans
-
Pak, J. and Fire, A. (2007). Distinct populations of primary and secondary effectors during RNAi inC. elegans. Science 315, 241-244.
-
(2007)
Science
, vol.315
, pp. 241-244
-
-
Pak, J.1
Fire, A.2
-
24
-
-
0003030680
-
The number of iterations, convergence diagnostics and generic Metropolis algorithms
-
W. R. Gilks, D. J., Spiegelhalter, and S. Richardson, eds.), London, U.K.: Chapman and Hall.
-
Raftery, A. E. and Lewis, S. M. (1995). The number of iterations, convergence diagnostics and generic Metropolis algorithms. In Practical Markov Chain Monte Carlo, W. R. Gilks, D. J., Spiegelhalter, and S. Richardson, (eds.), 115-130. London, U.K.: Chapman and Hall.
-
(1995)
Practical Markov Chain Monte Carlo
, pp. 115-130
-
-
Raftery, A.E.1
Lewis, S.M.2
-
25
-
-
33845436047
-
Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs inC. elegans
-
Ruby, J. G., Jan, C., Player, C., Axtell, M. J., Lee, W., Nusbaum, C., Ge, H., and Bartel, D. P. (2006). Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs inC. elegans. Cell 127, 1193-1207.
-
(2006)
Cell
, vol.127
, pp. 1193-1207
-
-
Ruby, J.G.1
Jan, C.2
Player, C.3
Axtell, M.J.4
Lee, W.5
Nusbaum, C.6
Ge, H.7
Bartel, D.P.8
-
26
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure, J. and Ji, H. (2008). Next-generation DNA sequencing. Nature Biotechnology 26, 1135-1145.
-
(2008)
Nature Biotechnology
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
27
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T. F. and Waterman, M. S. (1981). Identification of common molecular subsequences. Journal of Molecular Biology 147, 195-197.
-
(1981)
Journal of Molecular Biology
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
28
-
-
34250868124
-
Differential regulation of microRNAs by p53 revealed by massively parallel sequencing: miR-34a is a p53 target that induces apoptosis and G1-arrest
-
Tarasov, V., Jung, P., Verdoodt, B., Lodygin, D., Epanchintsev, A., Menssen, A., Meister, G., and Hermeking, H. (2007). Differential regulation of microRNAs by p53 revealed by massively parallel sequencing: miR-34a is a p53 target that induces apoptosis and G1-arrest. Cell Cycle 6, 1586-1593.
-
(2007)
Cell Cycle
, vol.6
, pp. 1586-1593
-
-
Tarasov, V.1
Jung, P.2
Verdoodt, B.3
Lodygin, D.4
Epanchintsev, A.5
Menssen, A.6
Meister, G.7
Hermeking, H.8
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