Evolutionary history of a widespread Indo-Pacific goby: The role of Pleistocene sea-level changes on demographic contraction/expansion dynamics

Molecular Phylogenetics and Evolution

Volumn 62, Issue 1, 2012, Pages 566-572

  Hoareau, Thierry Bernard ^a   Boissin, Emilie ^a   Berrebi, Patrick ^b  

^a UNIVERSITY OF PRETORIA   (South Africa)

^b INSTITUT DES SCIENCES DE L EVOLUTION   (France)

Author keywords

Amphidromous species; Coalescent based methods; Colonisation routes; Paleo oceanography; Population age

Indexed keywords

CYTOCHROME B; FISH PROTEIN;

ANIMAL; ARTICLE; BAYES THEOREM; CLASSIFICATION; CLIMATE CHANGE; DNA SEQUENCE; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; INDIAN OCEAN; MOLECULAR EVOLUTION; PACIFIC OCEAN; PERCIFORMES; PHYLOGENY; PHYLOGEOGRAPHY; SOUTHEAST ASIA; SPECIES DIFFERENTIATION; STATISTICAL MODEL; WATER FLOW;

ANIMALS; ASIA, SOUTHEASTERN; BAYES THEOREM; CLIMATE CHANGE; CYTOCHROMES B; EVOLUTION, MOLECULAR; FISH PROTEINS; GENETIC SPECIATION; GENETIC VARIATION; HAPLOTYPES; INDIAN OCEAN; LIKELIHOOD FUNCTIONS; PACIFIC OCEAN; PERCIFORMES; PHYLOGENY; PHYLOGEOGRAPHY; SELECTION, GENETIC; SEQUENCE ANALYSIS, DNA; WATER MOVEMENTS;

CALLOGOBIUS ATRATUS; CALLOGOBIUS SCLATERI; SICYOPTERUS LAGOCEPHALUS;

EID: 83655201244     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2011.10.004     Document Type: Article

References (31)

1. Bellwood D.R., Hughes T.P. Regional-scale assembly rules and biodiversity of coral reefs. Science 2001, 292:1532-1534.
2. Boissin E., Hoareau T., Berrebi P. Effects of current and historic habitat fragmentation on the genetic structure of the sand goby Pomatoschistus minutus (Osteichthys, Gobiidae). Biological Journal of the Linnean Society 2011, 102:175-198.
3. Carpenter K.E., Springer V.G. The center of the center of marine shore fish biodiversity: the Philippine Islands. Environmental Biology of Fishes 2005, 72:467-480.
4. Delacroix, P., 1987. Etude des «Bichiques», juvéniles de Sicyopterus lagocephalus (Pallas), poissons Gobiidés migrateur des rivières de La Réunion (Océan Indien): Exploitation, répartition, biologie de la reproduction et de la croissance. Doctorate Thesis, Universite de La Reunion.
5. Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. Bmc Evolutionary Biology 2007, 7:214.
6. Excoffier L., Laval G., Schneider S. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics 2005, 1:47-50.
7. Gaither M.R., Toonen R.J., Robertson D.R., Planes S., Bowen B.W. Genetic evaluation of marine biogeographical barriers: perspectives from two widespread Indo-Pacific snappers (Lutjanus kasmira and Lutjanus fulvus). Journal of Biogeography 2010, 37:133-147.
8. Gill A.C., Kemp J.M. Widespread Indo-Pacific shore-fish species: a challenge for taxonomists, biogeographers, ecologists, and fishery and conservation managers. Environmental Biology of Fishes 2002, 65:165-174.
9. Hewitt G. The genetic legacy of the quaternary ice ages. Nature 2000, 405:907-913.
10. Hey J., Nielsen R. Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proceedings of the National Academy of Sciences of the United States of America 2007, 104:2785-2790.
11. Hoareau, T.B., 2005. Dynamique structurale des «bichiques» (Sicyopterus lagocephalus), Gobiidés amphidromes des rivières de La Réunion. Doctorate Thesis, Universite de La Reunion.
12. Hoareau T., Lecomte-Finiger R., Grondin H., Conand C., Berrebi P. Oceanic larval life of La Reunion 'bichiques', amphidromous gobiid post-larvae. Marine Ecology-Progress Series 2007, 333:303-308.
13. Keith P., Galewski T., Cattaneo-Berrebi G., Hoareau T., Berrebi P. Ubiquity of Sicyopterus lagocephalus (Teleostei : Gobioidei) and phylogeography of the genus Sicyopterus in the Indo-Pacific area inferred from mitochondrial cytochrome b gene. Molecular Phylogenetics and Evolution 2005, 37:721-732.
14. Kosakovsky-Pond S.L.K., Frost S.D.W., Muse S.V. HyPhy: hypothesis testing using phylogenies. Bioinformatics 2005, 21:676-679.
15. Larmuseau M.H.D., Van Houdt J.K.J., Guelinckx J., Hellemans B., Volckaert F.A.M. Distributional and demographic consequences of Pleistocene climate fluctuations for a marine demersal fish in the north-eastern Atlantic. Journal of Biogeography 2009, 36:1138-1151.
16. Lessios H.A. The great American Schism: divergence of marine organisms after the rise of the Central American Isthmus. Annual Review of Ecology Evolution and Systematics 2008, 39:63-91.
17. Lessios H.A., Robertson D.R. Crossing the impassable: genetic connections in 20 reef fishes across the eastern Pacific barrier. Proceedings of the Royal Society B-Biological Sciences 2006, 273:2201-2208.
18. Librado P., Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
19. Lisiecki L.E., Raymo M.E. A Pliocene-Pleistocene stack of 57 globally distributed benthic delta O-18 records. Paleoceanography 2005, 20:PA1003.
20. Maggs C.A., Castilho R., Foltz D., Henzler C., Jolly M.T., Kelly J., Olsen J., Perez K.E., Stam W., Vainola R., Viard F., Wares J. Evaluating signatures of Glacial Refugia for North Atlantic benthic marine taxa. Ecology 2008, 89:S108-S122.
21. Marko P.B., Hoffman J.M., Emme S.A., McGovern T.M., Keever C.C., Cox L.N. The 'Expansion-Contraction' model of Pleistocene biogeography: rocky shores suffer a sea change?. Molecular Ecology 2010, 19:146-169.
22. Martinez E., Ganachaud A., Lefevre J., Maamaatuaiahutapu K. Central South Pacific thermocline water circulation from a high-resolution ocean model validated against satellite data: Seasonal variability and El Nino 1997-1998 influence. Journal of Geophysical Research-Oceans 2009, 114:16.
23. Posada D., Crandall K.A. Intraspecific gene genealogies: trees grafting into networks. Trends in Ecology & Evolution 2001, 16:37-45.
24. Provan J., Bennett K.D. Phylogeographic insights into cryptic glacial refugia. Trends in Ecology & Evolution 2008, 23:564-571.
25. Ravago-Gotanco R.G., Juinio-Menez M.A. Phylogeography of the mottled spinefoot Siganus fuscescens: Pleistocene divergence and limited genetic connectivity across the Philippine archipelago. Molecular Ecology 2010, 19:4520-4534.
26. Schott F.A., McCreary J.P. The monsoon circulation of the Indian Ocean. Progress in Oceanography 2001, 51:1-123.
27. Tajima F. Evolutionary relationship of DNA-sequences in finite populations. Genetics 1983, 105:437-460.
28. Tudhope A.W., Chilcott C.P., McCulloch M.T., Cook E.R., Chappell J., Ellam R.M., Lea D.W., Lough J.M., Shimmield G.B. Variability in the El Nino - southern oscillation through a glacial-interglacial cycle. Science 2001, 291:1511-1517.
29. Waelbroeck C., Labeyrie L., Michel E., Duplessy J.C., McManus J.F., Lambeck K., Balbon E., Labracherie M. Sea-level and deep water temperature changes derived from benthic foraminifera isotopic records. Quaternary Science Reviews 2002, 21:295-305.
30. Watterson G.A. Number of segregating sites in genetic models without recombination. Theoretical Population Biology 1975, 7:256-276.
31. Wilson A.B., Veraguth I.E. The impact of Pleistocene glaciation across the range of a widespread European coastal species. Molecular Ecology 2010, 19:4535-4553.