Solution structure of gp17 from the Siphoviridae bacteriophage SPP1: Insights into its role in virion assembly

Proteins: Structure, Function and Bioinformatics

Volumn 80, Issue 1, 2012, Pages 319-326

  Chagot, Benjamin ^a   Auzat, Isabelle ^b   Gallopin, Matthieu ^a   Petitpas, Isabelle ^b   Gilquin, Bernard ^a   Tavares, Paulo ^b   Zinn Justin, Sophie ^a  

^a SERVICE DE CHIMIE BIOORGANIQUE ET DE MARQUAGE   (France)

^b INSTITUTE FOR INTEGRATIVE BIOLOGY OF THE CELL I2BC   (France)

Author keywords

Assembly; Conformation exchange; Siphoviridae; Tail component; Virus

Indexed keywords

BACTERIOPHAGE; GENE EXPRESSION; NONHUMAN; NOTE; PRIORITY JOURNAL; PROTEIN STRUCTURE; VIRION; VIRUS MORPHOLOGY;

AMINO ACID SEQUENCE; COMPUTER SIMULATION; CONSERVED SEQUENCE; CRYOELECTRON MICROSCOPY; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MONTE CARLO METHOD; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT; SIPHOVIRIDAE; STRUCTURAL HOMOLOGY, PROTEIN; VIRAL TAIL PROTEINS; VIRUS ASSEMBLY;

SIPHOVIRIDAE;

EID: 83555179125     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.23191     Document Type: Note

References (24)

1. Hendrix RW, Smith MC, Burns RN, Ford ME, Hatfull GF. Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. Proc Natl Acad Sci USA 1999; 96: 2192-2197.
2. Tavares P, Zinn-Justin S, Orlova EV. Genome gating in tailed bacteriophage capsids. In "Viral Molecular Machines", Rossmann MG, Rao VB, editors. New York: Springer; 2011.
3. Tavares P, Santos MA, Lurz R, Morelli G, de Lencastre H, Trautner TA. Identification of a gene in Bacillus subtilis bacteriophage SPP1 determining the amount of packaged DNA. J Mol Biol 1992; 225: 81-92.
4. Plisson C, White HE, Auzat I, Zafarani A, Sao-Jose C, Lhuillier S, Tavares P, Orlova EV. Structure of bacteriophage SPP1 tail reveals trigger for DNA ejection. EMBO J 2007; 26: 3720-3728.
5. Lhuillier S, Gallopin M, Gilquin B, Brasiles S, Lancelot N, Letellier G, Gilles M, Dethan G, Orlova EV, Couprie J, Tavares P, Zinn-Justin S. Structure of bacteriophage SPP1 head-to-tail connection reveals mechanism for viral DNA gating. Proc Natl Acad Sci U S A 2009; 106: 8507-8512.
6. Orlova EV, Gowen B, Droge A, Stiege A, Weise F, Lurz R, van Heel M, Tavares P. Structure of a viral DNA gatekeeper at 10 A resolution by cryo-electron microscopy. EMBO J 2003; 22: 1255-1262.
7. Lebedev AA, Krause MH, Isidro AL, Vagin AA, Orlova EV, Turner J, Dodson EJ, Tavares P, Antson AA. Structural framework for DNA translocation via the viral portal protein. EMBO J 2007; 26: 1984-1994.
8. Savarin P, Zinn-Justin S, Gilquin B. Variability in automated assignment of NOESY spectra and three-dimensional structure determination: a test case on three small disulfide-bonded proteins. J Biomol NMR 2001; 19: 49-62.
9. Brunger AT. Version 1.2 of the Crystallography and NMR system. Nat Protoc 2007; 2: 2728-2733.
10. Cornilescu G, Delaglio F, Bax A. Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J Biomol NMR 1999; 13: 289-302.
11. Brooks BR, Bruccoleri RE, Olafson BD, States DJ, Swaminathan S, Karplus M. J Comput Chem 1983; 4: 187.
12. Farrow NA, Zhang O, Forman-Kay JD, Kay LE. A heteronuclear correlation experiment for simultaneous determination of 15N longitudinal decay and chemical exchange rates of systems in slow equilibrium. J Biomol NMR 1994; 4: 727-734.
13. Palmer AGI, Rance M, Wright PE. The Modelfree software. J Am Chem Soc 1991; 113: 4371-4380.
14. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997; 25: 3389-3402.
15. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004; 32: 1792-1797.
16. Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N. ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic Acids Res 2010; 38: W529-533.
17. Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ. Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 2009; 25: 1189-1191.
18. Holm L, Rosenstrom P. Dali server: conservation mapping in 3D. Nucleic Acids Res 2010; 38 Suppl: W545-W549.
19. Pell LG, Liu A, Edmonds L, Donaldson LW, Howell PL, Davidson AR. The X-ray crystal structure of the phage lambda tail terminator protein reveals the biologically relevant hexameric ring structure and demonstrates a conserved mechanism of tail termination among diverse long-tailed phages. J Mol Biol 2009; 389: 938-951.
20. Wahab AT, Serrano P, Geralt M, Wuthrich K. NMR structure of the Bordetella bronchiseptica protein NP-888769.1 establishes a new phage-related protein family PF13554. Protein Sci; 20: 1137-1144.
21. Edmonds L, Liu A, Kwan JJ, Avanessy A, Caracoglia M, Yang I, Maxwell KL, Rubenstein J, Davidson AR, Donaldson LW. The NMR structure of the gpU tail-terminator protein from bacteriophage lambda: identification of sites contributing to Mg(II)-mediated oligomerization and biological function. J Mol Biol 2007; 365: 175-186.
22. Katsura I, Tsugita A. Purification and characterization of the major protein and the terminator protein of the bacteriophage lambda tail. Virology 1977; 76: 129-145.
23. Cardarelli L, Pell LG, Neudecker P, Pirani N, Liu A, Baker LA, Rubinstein JL, Maxwell KL, Davidson AR. Phages have adapted the same protein fold to fulfill multiple functions in virion assembly. Proc Natl Acad Sci U S A; 107: 14384-14389.
24. Pell LG, Kanelis V, Donaldson LW, Howell PL, Davidson AR. The phage lambda major tail protein structure reveals a common evolution for long-tailed phages and the type VI bacterial secretion system. Proc Natl Acad Sci U S A 2009; 106: 4160-4165.