Mould routine identification in the clinical laboratory by Matrix-Assisted laser desorption ionization Time-Of-Flight mass spectrometry

PLoS ONE

Volumn 6, Issue 12, 2011, Pages

  Cassagne, Carole ^a   Ranque, Stéphane ^a   Normand, Anne Cécile ^a   Fourquet, Patrick ^b   Thiebault, Sandrine ^a   Planard, Chantal ^c   Hendrickx, Marijke ^c   Piarroux, Renaud ^a  

^a TIMONE HOSPITAL   (France)

^b CENTRE D IMMUNOLOGIE DE MARSEILLE LUMINY   (France)

^c SCIENTIFIC INSTITUTE OF PUBLIC HEALTH   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

ACETONITRIL; AGAR; CHEMICAL COMPOUND; CHLORAMPHENICOL; FORMIC ACID; FUNGAL DNA; GENTAMICIN; SABOURAUND AGAR; UNCLASSIFIED DRUG;

ARTICLE; BEAUVERIA BASSIANA; CLINICAL LABORATORY; DNA SEQUENCE; FUNGAL STRAIN; FUNGUS CULTURE; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; INTERMETHOD COMPARISON; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOULD; MUCOR; MUCOR CIRCINELLOIDES; NONHUMAN; PHENOTYPE; PROCESS OPTIMIZATION; PROSPECTIVE STUDY; REFERENCE DATABASE; RHIZOPUS ORYZAE; SEPARATION TECHNIQUE; STANDARDIZATION; VALIDATION STUDY; DIAGNOSTIC PROCEDURE; FUNGUS; HUMAN; ISOLATION AND PURIFICATION; MASS SPECTROMETRY; METHODOLOGY; REPRODUCIBILITY; STANDARD;

CLINICAL LABORATORY TECHNIQUES; FUNGI; HUMANS; REFERENCE STANDARDS; REPRODUCIBILITY OF RESULTS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 83455212028     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0028425     Document Type: Article

References (28)

1. Chabasse B, (2009) Emergence of new fungal pathogens: general review. Revue Francophone des Laboratoire 416: 71-87.
2. Tang CM, Holden DW, Aufauvre-Brown A, Cohen J, (1993) The detection of Aspergillus spp. by the polymerase chain reaction and its evaluation in bronchoalveolar lavage fluid. Am Rev Respir Dis 148: 1313-1317.
3. Alexander BD, (2002) Diagnosis of fungal infection: new technologies for the mycology laboratory. Transpl Infect DisSuppl 3: 32-37.
4. Balajee SA, Sigler L, Brandt ME, (2007) DNA and the classical way: identification of medically important molds in the 21st century. Med Mycol 45: 475-490.
5. Hsiao CR, Huang L, Bouchara J, Barton R, Li HC, et al. (2005) Identification of medically important molds by an oligonucleotide array. J Clin Microbiol 43: 3760-3768.
6. Marvin LF, Roberts MA, Fay LB, (2003) Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry in clinical chemistry. Clin Chim Acta 337: 11-21.
7. Seng P, Drancourt M, Gouriet F, La Scola B, Fournier P, et al. (2009) Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Infect Dis 49: 543-551.
8. Santos C, Paterson RRM, Venâncio A, Lima N, (2009) Filamentous fungal characterizations by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. J Appl Microbiol 108 (2): 375-85.
9. Welham KJ, Domin MA, Johnson K, Jones L, Ashton DS, (2000) Characterization of fungal spores by laser desorption/ionization time-of-flight mass spectrometry. Rapid Commun Mass Spectrom 14: 307-310.
10. White TJ, Bruns T, Lee S, Taylor JW, (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors. PCR Protocols: A Guide to Methods and Applications, eds pp. 315-322 Academic Press, Inc., New York.
11. Glass NL, Donaldson GC, (1995) Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous Ascomycetes. Appl Environ Microbiol 61 (4): 1323-30.
12. De Hoog GS, Guarro J, Gene J, Figueras JM, (2000) Atlas of Clinical Fungi. Books pp. 0-1126.
13. de Hoog GS, Nishikaku AS, Fernandez-Zeppenfeldt G, Padín-González C, Burger E, et al. (2007) Molecular analysis and pathogenicity of the Cladophialophora carrionii complex, with the description of a novel species. Stud Mycol 58: 219-234.
14. Hettick JM, Green BJ, Buskirk AD, Kashon ML, Slaven JE, et al. (2008) Discrimination of Penicillium isolates by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry fingerprinting. Rapid Commun Mass Spectrom 22: 2555-2560.
15. Chen H, Chen Y, (2005) Characterization of intact Penicillium spores by matrix-assisted laser desorption/ionization mass spectrometry. Rapid Commun Mass Spectrom 19: 3564-3568.
16. Erhard M, Hipler U, Burmester A, Brakhage AA, Wöstemeyer J, (2008) Identification of dermatophyte species causing onychomycosis and tinea pedis by MALDI-TOF mass spectrometry. Exp Dermatol 17: 356-361.
17. Marinach-Patrice C, Lethuillier A, Marly A, Brossas J, Gené J, et al. (2009) Use of mass spectrometry to identify clinical Fusarium isolates. Clin Microbiol Infect 15: 634-642.
18. Tao J, Zhang G, Jiang Z, Cheng Y, Feng J, et al. (2009) Detection of pathogenic verticillium spp. using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Commun Mass Spectrom 23: 3647-3654.
19. De Respinis S, Vogel G, Benagli C, (2009) Maldi-tof ms of Trichoderma: a model system for the identification of microfungi. Mycological Progress 109 (4): 1209-1217.
20. Hettick JM, Green BJ, Buskirk AD, Kashon ML, Slaven JE, et al. (2008) Discrimination of Aspergillus isolates at the species and strain level by matrix-assisted laser desorption/ionization time of flight mass spectrometry fingerprinting. Anal Biochem 380 (2): 276-281.
21. Coulibaly O, Marinach-Patrice C, Cassagne C, Piarroux R, Mazier D, et al. (2011) Pseudallescheria/Scedosporium complex species identification by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Med Mycol 49 (6): 621-626.
22. Valentine NB, Wahl JH, Kingsley MT, Wahl KL, (2002) Direct surface analysis of fungal species by matrix-assisted laser desorption/ionization mass spectrometry. Rapid Commun Mass Spectrom 16: 1352-1357.
23. Giebel R, Worden C, Rust SM, Kleinheinz GT, Robbins M, et al. (2010) Microbial fingerprinting using matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) applications and challenges. Adv Appl Microbiol 71: 149-84.
24. Qian J, Jim E, Cutler JE, Cole RB, Cai Y, (2008) MALDI-TOF mass signatures for differentiation of yeast species, strain grouping and monitoring of morphogenesis markers. Anal Bioanal Chem 392: 439-449.
25. Li TY, Liu BH, Chen YC, (2000) Characterization of Aspergillus spores by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Commun Mass Spectrom 14 (24): 2393-400.
26. Niemeier RT, Sivasubramani SK, Reponen T, Grinshpun SA, (2006) Assessment of fungal contamination in moldy homes: comparison of different methods. J Occup Environ Hyg 3 (5): 262-73.
27. Ege MJ, Mayer M, Normand AC, Genuneit J, Cookson WO, et al. (2010) Exposure to environmental microorganisms and childhood asthma. N Engl J Med 24;364 (8): 701-9.
28. Bennett JW, Klich M, (2003) Mycotoxins. Clin Microbiol Rev 16 (3): 497-516 Review.