Competition between two wood-degrading fungi with distinct influences on residues

FEMS Microbiology Ecology

Volumn 79, Issue 1, 2012, Pages 109-117

  Song, Zewei ^a   Vail, Andrew ^a   Sadowsky, Michael J ^a   Schilling, Jonathan S ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

Author keywords

Competition; Fungi; Gloeophyllum trabeum; Irpex lacteus; qPCR; Wood decay

Indexed keywords

FUNGAL DNA; PRIMER DNA;

ALKALINITY; BIODEGRADATION; COLONIZATION; FUNGUS; PH; POLYMERASE CHAIN REACTION; QUANTITATIVE ANALYSIS; SOLUBILITY; WOOD;

ARTICLE; BASIDIOMYCETES; BIOMASS; GENETICS; METABOLISM; MICROBIOLOGY; ORGANISMAL INTERACTION; PHYSIOLOGY; POLYMERASE CHAIN REACTION; POLYPORALES; TREE; WOOD;

BASIDIOMYCOTA; BIOMASS; DNA PRIMERS; DNA, FUNGAL; MICROBIAL INTERACTIONS; POLYMERASE CHAIN REACTION; POLYPORALES; TREES; WOOD;

EID: 83455198630     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2011.01201.x     Document Type: Article

References (42)

1. ASTM Standard D1413-07e1 (2007) Standard Test Method for Wood Preservatives by Laboratory Soil-Block Cultures. ASTM International, West Conshohocken, PA.
2. Boddy L & Heilmann-Clausen J (2008) Basidiomycete community development in temperate angiosperm wood. Ecology of Saprotrophic Basidiomycetes (Boddy L, Frankland JC & van West P, eds), pp. 209-235. Elsevier, Amsterdam.
3. Bruce A & Highley TL (1991) Control of growth of wood decay basidiomycetes by Trichoderma spp. and other potentially antagonistic fungi. For Prod J 41: 63-67.
4. Corpet F (1988) Multiple sequence alignment with hierarchical-clustering. Nucleic Acids Res 16: 10881-10890.
5. Cox C (1990) Fieller's theorem, the likelihood and the delta method. Biometrics 46: 709-718.
6. Doyle J & Doyle J (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-15.
7. Ekblad A & Nasholm T (1996) Determination of chitin in fungi and mycorrhizal roots by an improved HPLC analysis of glucosamine. Plant Soil 178: 29-35.
8. Eriksson KEL, Blanchette RA & Ander P (1990) Microbial and Enzymatic Degradation of Wood and Wood Component. Springer-Verlag, Berlin.
9. Fierer N, Jacson AJ, Vilgalys R & Jackson RB (2005) Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays. Appl Environ Microbiol 71: 4117-4120.
10. Filley TR, Cody GD, Goodell B, Jellison J, Noser C & Ostrofsky A (2002) Lignin demethylation and polysaccharide decomposition in spruce sapwood degraded by brown rot fungi. Org Geochem 33: 111-124.
11. Frostegard A, Bååth E & Tunlid A (1993) Shifts in the structure of soil microbial communities in limed forests as revealed by phospholipid fatty-acid analysis. Soil Biol Biochem 25: 723-730.
12. Fukami T, Dickie IA, Wilkie JP, Paulus BC, Park D, Roberts A, Buchanan PK & Allen RB (2010) Assembly history dictates ecosystem functioning: evidence from wood decomposer communities. Ecol Lett 13: 675-684.
13. Gilbertson R (1980) Wood-rotting fungi of North America. Mycologia 72: 1-49.
14. Gilbertson R (1981) North American wood-rotting fungi that cause brown rot. Mycotaxon 12: 372-416.
15. Gilbertson R & Ryvarden L (1988) North American Polypores. Lubrecht & Cramer Ltd, New York.
16. Graaff MA, Classen AT, Castro HF & Schadt W (2010) Labile soil carbon inputs mediate the soil microbial community composition and plant residue decomposition rates. New Phytol 4: 1055-1064.
17. Groppe K, Sanders I, Wiemken A & Boller T (1995) A microsatellite marker for studying the ecology and diversity of fungal endophytes (Epichloë spp.) in grasses. Appl Environ Microbiol 61: 3943-3949.
18. Guglielmo F, Bergemann SE, Gonthier P, Nicolotti G & Garbelotto M (2007) A multiplex PCR-based method for the detection and early identification of wood rotting fungi in standing trees. J Appl Microbiol 103: 1490-1507.
19. Guglielmo F, Gonthier P, Garbelotto M & Nicolotti G (2010) Optimization of sampling procedures for DNA-based diagnosis of wood decay fungi in standing trees. Lett Appl Microbiol 51: 90-97.
20. Harmon ME, Franklin JF, Swanson FJ et al. (1986) Ecology of coarse woody debris in temperate ecosystems. Adv Ecol Res 15: 135-305.
21. Hibbett DS & Donoghue MJ (2001) Analysis of character correlations among wood decay mechanisms, mating systems, and substrate ranges in homobasidiomycetes. Syst Biol 50: 215-242.
22. Highley TL (1973) Influence of carbon source on cellulase activity of white-rot and brown-rot fungi. Wood Fiber Sci 5: 50-58.
23. Jasalavich CA, Ostrofsky A & Jellison J (2000) Detection and identification of decay fungi in spruce wood by restriction fragment length polymorphism analysis of amplified genes encoding rRNA. Appl Environ Microbiol 66: 4725-4734.
24. Jurgensen MF, Johnson J, Wise MA, Williams CS & Wilson R (1997) Impacts of timber harvesting on soil organic matter, nitrogen, productivity, and health of Inland Northwest forests. For Sci 43: 234-251.
25. Kennedy PG, Bergemann SE, Hortal S & Bruns TD (2007) Determining the outcome of field-based competition between two Rhizopogon species using real-time PCR. Mol Ecol 16: 881-890.
26. Kim SH, Uzunovic A & Breuil C (1999) Rapid detection of Ophiostoma piceae and O. quercus in stained wood by PCR. Appl Environ Microbiol 65: 287-290.
27. Klein DA & Paschke MW (2004) Filamentous fungi: the indeterminate lifestyle and microbial ecology. Microb Ecol 47: 224-235.
28. Lindblad I (2000) Host specificity of some wood-inhabiting fungi in a tropical forest. Mycologia 92: 399-405.
29. Marzorati M, Wittebolle L, Boon N, Daffonchio D & Verstraete W (2008) How to get more out of molecular fingerprints: practical tools for microbial ecology. Environ Microbiol 10: 1571-1581.
30. Muyzer G, Dewaal EC & Uitterlinden AG (1993) Profiling of complex microbial-populations by denaturing gradient gel-electrophoresis analysis of polymerase chain reaction-amplified genes-coding for 16S ribosomal-RNA. Appl Environ Microbiol 59: 695-700.
31. Newell SY, Arsuffi TL & Fallon RD (1988) Fundamental procedures for determining ergosterol content of decaying plant-material by liquid-chromatography. Appl Environ Microbiol 54: 1876-1879.
32. Rypáček V & Rypáčková M (1975) Brown rot of wood as a model for studies of lignocellulose humification. Biol Plant 17: 452-457.
33. Scheffer T & Cowling EB (1966) Natural resistance of wood to microbial deterioration. Annu Rev Phytopathol 4: 147-168.
34. Schilling JS & Jellison J (2005) Oxalate regulation by two brown rot fungi decaying oxalate-amended and non-amended wood. Holzforschung 59: 681-688.
35. Schilling JS, Tewalt JP & Duncan SM (2009) Synergy between pretreatment lignocellulose modifications and saccharification efficiency in two brown rot fungal systems. Appl Microbiol Biotechnol 84: 465-475.
36. Shaw CG (1973) Host Fungus Index for the Pacific Northwest I. Hosts Bulletin 765. Washington Agricultural Experiment Station, Pullman, Washington, DC.
37. Shortle WC, Dudzik KR & Smith KT (2010) Development of wood decay in wound-initiated discolored wood of eastern red cedar. Holzforschung 64: 529-536.
38. Spears JDH, Holub SM, Harmon ME & Lajtha K (2003) The influence of decomposing logs on soil biology and nutrient cycling in an old-growth mixed coniferous forest in Oregon, USA. Can J For Res 33: 2193-2201.
39. Tringe SG, von Mering C, Kobayashi A et al. (2005) Comparative metagenomics of microbial communities. Science 308: 554-557.
40. Tsuneda I & Kennedy LL (1980) Basidiospore germination and substrate preference in Fomes fomentarius and Fomitopsis cajanderi. Mycologia 72: 204-208.
41. Valášková V & Baldrian P (2006) Degradation of cellulose and hemicelluloses by the brown rot fungus Piptoporus betulinus - production of extracellular enzymes and characterization of the major cellulases. Microbiology 152: 3613-3622.
42. Zabel R & Morrell J (1992) Wood Microbiology: Decay and Its Prevention. Academic Press, San Diego, CA.