메뉴 건너뛰기




Volumn 189, Issue 4, 2011, Pages 1225-1233

Dynamics of homology searching during gene conversion in Saccharomyces cerevisiae revealed by donor competition

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; EPIGENETICS; FUNGAL GENE; GENE CONVERSION; GENE LOCUS; GENE SILENCING; HETEROCHROMATIN; HML GENE; HMR GENE; MATING TYPE GENE; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE;

EID: 83455197497     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.111.132738     Document Type: Article
Times cited : (25)

References (38)
  • 1
    • 69849097676 scopus 로고    scopus 로고
    • Analysis of repair mechanism choice during homologous recombination
    • Agmon, N., S. Pur, B. Liefshitz, and M. Kupiec, 2009 Analysis of repair mechanism choice during homologous recombination. Nucleic Acids Res. 37: 5081-5092.
    • (2009) Nucleic Acids Res , vol.37 , pp. 5081-5092
    • Agmon, N.1    Pur, S.2    Liefshitz, B.3    Kupiec, M.4
  • 2
    • 0842331349 scopus 로고    scopus 로고
    • Mating typedependent constraints on the mobility of the left arm of yeast chromosome III
    • Bressan, D. A., J. Vazquez, and J. E. Haber, 2004 Mating typedependent constraints on the mobility of the left arm of yeast chromosome III. J. Cell Biol. 164: 361-371.
    • (2004) J. Cell Biol , vol.164 , pp. 361-371
    • Bressan, D.A.1    Vazquez, J.2    Haber, J.E.3
  • 3
    • 33746387508 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae donor preference during mating-type switching is dependent on chromosome architecture and organization
    • Coïc, E., G. F. Richard, and J. E. Haber, 2006a Saccharomyces cerevisiae donor preference during mating-type switching is dependent on chromosome architecture and organization. Genetics 173: 1197-1206.
    • (2006) Genetics , vol.173 , pp. 1197-1206
    • Coïc, E.1    Richard, G.F.2    Haber, J.E.3
  • 4
    • 33745867311 scopus 로고    scopus 로고
    • Cell cycle-dependent regulation of Saccharomyces cerevisiae donor preference during mating-type switching by SBF (Swi4/Swi6) and Fkh1
    • Coïc, E., K. Sun, C. Wu, and J. E. Haber, 2006b Cell cycle-dependent regulation of Saccharomyces cerevisiae donor preference during mating-type switching by SBF (Swi4/Swi6) and Fkh1. Mol. Cell. Biol. 26: 5470-5480.
    • (2006) Mol. Cell. Biol , vol.26 , pp. 5470-5480
    • Coïc, E.1    Sun, K.2    Wu, C.3    Haber, J.E.4
  • 5
    • 2542508779 scopus 로고    scopus 로고
    • Removal of one nonhomologous DNA end during gene conversion by a RAD1- and MSH2-independent pathway
    • Colaiacovo, M. P., F. Paques, and J. E. Haber, 1999 Removal of one nonhomologous DNA end during gene conversion by a RAD1- and MSH2-independent pathway. Genetics 151: 1409-1423.
    • (1999) Genetics , vol.151 , pp. 1409-1423
    • Colaiacovo, M.P.1    Paques, F.2    Haber, J.E.3
  • 7
    • 0037083376 scopus 로고    scopus 로고
    • Capturing chromosome conformation
    • Dekker, J., K. Rippe, M. Dekker, and N. Kleckner, 2002 Capturing chromosome conformation. Science 295: 1306-1311.
    • (2002) Science , vol.295 , pp. 1306-1311
    • Dekker, J.1    Rippe, K.2    Dekker, M.3    Kleckner, N.4
  • 8
    • 0026498944 scopus 로고
    • Removal of nonhomologous DNA ends in double-strand break recombination: The role of the yeast ultraviolet repair gene RAD1
    • Fishman-Lobell, J., and J. E. Haber, 1992 Removal of nonhomologous DNA ends in double-strand break recombination: the role of the yeast ultraviolet repair gene RAD1. Science 258: 480-484.
    • (1992) Science , vol.258 , pp. 480-484
    • Fishman-Lobell, J.1    Haber, J.E.2
  • 9
    • 0032873415 scopus 로고    scopus 로고
    • Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae
    • Goldstein, A. L., and J. H. McCusker, 1999 Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast 15: 1541-1553.
    • (1999) Yeast , vol.15 , pp. 1541-1553
    • Goldstein, A.L.1    McCusker, J.H.2
  • 11
    • 0032412476 scopus 로고    scopus 로고
    • Mating-type gene switching in Saccharomyces cerevisiae
    • Haber, J. E., 1998 Mating-type gene switching in Saccharomyces cerevisiae. Annu. Rev. Genet. 32: 561-599.
    • (1998) Annu Rev. Genet , vol.32 , pp. 561-599
    • Haber, J.E.1
  • 12
    • 48649105254 scopus 로고    scopus 로고
    • Decisions, decisions: Donor preference during budding yeast mating-type switching
    • Sex in Fungi: Molecular Determination and Evolutionary Implications, edited by J. Heitman, J. W. Kronstad, J. W. Taylor, and L. A. Casselton. American Society for Microbiology Press, Washington, DC
    • Haber, J. E., 2007 Decisions, decisions: donor preference during budding yeast mating-type switching, pp. 159-170 in Sex in Fungi: Molecular Determination and Evolutionary Implications, edited by J. Heitman, J. W. Kronstad, J. W. Taylor, and L. A. Casselton. American Society for Microbiology Press, Washington, DC.
    • (2007) Sex in Fungi: Molecular Determination and Evolutionary Implications , pp. 159-170
    • Haber, J.E.1
  • 13
    • 79952768906 scopus 로고    scopus 로고
    • Inaugural Article: Real-time analysis of double-strand DNA break repair by homologous recombination
    • Hicks, W. M., M. Yamaguchi, and J. E. Haber, 2011 Inaugural Article: Real-time analysis of double-strand DNA break repair by homologous recombination. Proc. Natl. Acad. Sci. USA 108: 3108-3115.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 3108-3115
    • Hicks, W.M.1    Yamaguchi, M.2    Haber, J.E.3
  • 14
    • 33745712582 scopus 로고    scopus 로고
    • The dynamics of homologous pairing during mating type interconversion in budding yeast
    • Houston, P. L., and J. R. Broach, 2006 The dynamics of homologous pairing during mating type interconversion in budding yeast. PLoS Genet. 2: e98.
    • (2006) PLoS Genet , vol.2
    • Houston, P.L.1    Broach, J.R.2
  • 15
    • 0036723660 scopus 로고    scopus 로고
    • Characterization of RAD51-independent break-induced replication that acts preferentially with short homologous sequences
    • Ira, G., and J. E. Haber, 2002 Characterization of RAD51-independent break-induced replication that acts preferentially with short homologous sequences. Mol. Cell. Biol. 22: 6384-6392.
    • (2002) Mol. Cell. Biol , vol.22 , pp. 6384-6392
    • Ira, G.1    Haber, J.E.2
  • 16
    • 0345447604 scopus 로고    scopus 로고
    • Srs2 and Sgs1-Top3 suppress crossovers during doublestrand break repair in yeast
    • Ira, G., A. Malkova, G. Liberi, M. Foiani, and J. E. Haber, 2003 Srs2 and Sgs1-Top3 suppress crossovers during doublestrand break repair in yeast. Cell 115: 401-411.
    • (2003) Cell , vol.115 , pp. 401-411
    • Ira, G.1    Malkova, A.2    Liberi, G.3    Foiani, M.4    Haber, J.E.5
  • 17
    • 33845454120 scopus 로고    scopus 로고
    • Conservative inheritance of newly synthesized DNA in double-strand break-induced gene conversion
    • Ira, G., D. Satory, and J. E. Haber, 2006 Conservative inheritance of newly synthesized DNA in double-strand break-induced gene conversion. Mol. Cell. Biol. 26: 9424-9429.
    • (2006) Mol. Cell. Biol , vol.26 , pp. 9424-9429
    • Ira, G.1    Satory, D.2    Haber, J.E.3
  • 18
    • 31444445458 scopus 로고    scopus 로고
    • A phosphatase complex that dephosphorylates gammaH2AX regulates DNA damage checkpoint recovery
    • Keogh, M. C., J. A. Kim, M. Downey, J. Fillingham, D. Chowdhury et al., 2005 A phosphatase complex that dephosphorylates gammaH2AX regulates DNA damage checkpoint recovery. Nature 439: 497-501.
    • (2005) Nature , vol.439 , pp. 497-501
    • Keogh, M.C.1    Kim, J.A.2    Downey, M.3    Fillingham, J.4    Chowdhury, D.5
  • 19
    • 34447532525 scopus 로고    scopus 로고
    • Heterochromatin is refractory to gamma-H2AX modification in yeast and mammals
    • Kim, J. A., M. Kruhlak, F. Dotiwala, A. Nussenzweig, and J. E. Haber, 2007 Heterochromatin is refractory to gamma-H2AX modification in yeast and mammals. J. Cell Biol. 178: 209-218.
    • (2007) J. Cell Biol , vol.178 , pp. 209-218
    • Kim, J.A.1    Kruhlak, M.2    Dotiwala, F.3    Nussenzweig, A.4    Haber, J.E.5
  • 20
    • 10344263324 scopus 로고    scopus 로고
    • Recombination proteins in yeast
    • Krogh, B. O., and L. S. Symington, 2004 Recombination proteins in yeast. Annu. Rev. Genet. 38: 233-271.
    • (2004) Annu Rev. Genet , vol.38 , pp. 233-271
    • Krogh, B.O.1    Symington, L.S.2
  • 21
    • 67149111884 scopus 로고    scopus 로고
    • Yeast silent mating type loci form heterochromatic clusters through silencer proteindependent long-range interactions
    • Miele, A., K. Bystricky, and J. Dekker, 2009 Yeast silent mating type loci form heterochromatic clusters through silencer proteindependent long-range interactions. PLoS Genet. 5: e1000478.
    • (2009) PLoS Genet , vol.e1000478 , pp. 5
    • Miele, A.1    Bystricky, K.2    Dekker, J.3
  • 22
    • 0033499772 scopus 로고    scopus 로고
    • High-resolution structural analysis of chromatin at specific loci: Saccharomyces cerevisiae silent mating-type locus HMRa
    • Ravindra, A., K. Weiss, and R. T. Simpson, 1999 High-resolution structural analysis of chromatin at specific loci: Saccharomyces cerevisiae silent mating-type locus HMRa. Mol. Cell. Biol. 19: 7944-7950.
    • (1999) Mol. Cell. Biol , vol.19 , pp. 7944-7950
    • Ravindra, A.1    Weiss, K.2    Simpson, R.T.3
  • 23
    • 0035668536 scopus 로고    scopus 로고
    • Making contacts on a nucleic acid polymer
    • Rippe, K., 2001 Making contacts on a nucleic acid polymer. Trends Biochem. Sci. 26: 733-740.
    • (2001) Trends Biochem Sci , vol.26 , pp. 733-740
    • Rippe, K.1
  • 24
    • 0024710885 scopus 로고
    • Effect of basemismatches on recombination via the RecBCD pathway
    • Shen, P., and H. V. Huang, 1989 Effect of basemismatches on recombination via the RecBCD pathway. Mol. Gen. Genet. 218: 359-360.
    • (1989) Mol. Gen. Genet , vol.218 , pp. 359-360
    • Shen, P.1    Huang, H.V.2
  • 25
    • 4644257681 scopus 로고    scopus 로고
    • Distribution and dynamics of chromatin modification induced by a defined DNA double-strand break
    • Shroff, R., A. Arbel-Eden, D. Pilch, G. Ira, W. M. Bonner et al., 2004 Distribution and dynamics of chromatin modification induced by a defined DNA double-strand break. Curr. Biol. 14: 1703-1711.
    • (2004) Curr. Biol , vol.14 , pp. 1703-1711
    • Shroff, R.1    Arbel-Eden, A.2    Pilch, D.3    Ira, G.4    Bonner, W.M.5
  • 26
    • 0041903834 scopus 로고    scopus 로고
    • In vivo roles of Rad52, Rad54, and Rad55 proteins in Rad51-mediated recombination
    • Sugawara, N., X. Wang, and J. E. Haber, 2003 In vivo roles of Rad52, Rad54, and Rad55 proteins in Rad51-mediated recombination. Mol. Cell 12: 209-219.
    • (2003) Mol. Cell , vol.12 , pp. 209-219
    • Sugawara, N.1    Wang, X.2    Haber, J.E.3
  • 27
    • 0024593929 scopus 로고
    • Doublestrand breaks at an initiation site for meiotic gene conversion
    • Sun, H., D. Treco, N. P. Schultes, and J. W. Szostak, 1989 Doublestrand breaks at an initiation site for meiotic gene conversion. Nature 338: 87-90.
    • (1989) Nature , vol.338 , pp. 87-90
    • Sun, H.1    Treco, D.2    Schultes, N.P.3    Szostak, J.W.4
  • 28
    • 0242384946 scopus 로고    scopus 로고
    • Rad51 recombinase and recombination mediators
    • Sung, P., L. Krejci, S. Van Komen, and M. G. Sehorn, 2003 Rad51 recombinase and recombination mediators. J. Biol. Chem. 278: 42729-42732.
    • (2003) J. Biol. Chem , vol.278 , pp. 42729-42732
    • Sung, P.1    Krejci, L.2    van Komen, S.3    Sehorn, M.G.4
  • 29
    • 0035818985 scopus 로고    scopus 로고
    • NEJ1 controls non-homologous end joining in Saccharomyces cerevisiae
    • Valencia, M., M. Bentele, M. B. Vaze, G. Herrmann, E. Kraus et al., 2001 NEJ1 controls non-homologous end joining in Saccharomyces cerevisiae. Nature 414: 666-669.
    • (2001) Nature , vol.414 , pp. 666-669
    • Valencia, M.1    Bentele, M.2    Vaze, M.B.3    Herrmann, G.4    Kraus, E.5
  • 30
    • 19344366752 scopus 로고    scopus 로고
    • Role of Saccharomyces singlestranded DNA-binding protein RPA in the strand invasion step of double-strand break repair
    • Wang, X., and J. E. Haber, 2004 Role of Saccharomyces singlestranded DNA-binding protein RPA in the strand invasion step of double-strand break repair. PLoS Biol. 2: 104-111.
    • (2004) PLoS Biol , vol.2 , pp. 104-111
    • Wang, X.1    Haber, J.E.2
  • 31
    • 0020772058 scopus 로고
    • Deletions and single base pair changes in the yeast mating type locus that prevent homothallic mating type conversions
    • Weiffenbach, B., D. T. Rogers, J. E. Haber, M. Zoller, D. W. Russell et al., 1983 Deletions and single base pair changes in the yeast mating type locus that prevent homothallic mating type conversions. Proc. Natl. Acad. Sci. USA 80: 3401-3405.
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 3401-3405
    • Weiffenbach, B.1    Rogers, D.T.2    Haber, J.E.3    Zoller, M.4    Russell, D.W.5
  • 32
    • 0031813153 scopus 로고    scopus 로고
    • High-resolution structural analysis of chromatin at specific loci: Saccharomyces cerevisiae silent mating type locus HMLa
    • Weiss, K., and R. T. Simpson, 1998 High-resolution structural analysis of chromatin at specific loci: Saccharomyces cerevisiae silent mating type locus HMLa. Mol. Cell. Biol. 18: 5392-5403.
    • (1998) Mol. Cell. Biol , vol.18 , pp. 5392-5403
    • Weiss, K.1    Simpson, R.T.2
  • 33
    • 0025020278 scopus 로고
    • Intermediates of recombination during mating type switching in Saccharomyces cerevisiae
    • White, C. I., and J. E. Haber, 1990 Intermediates of recombination during mating type switching in Saccharomyces cerevisiae. EMBO J. 9: 663-673.
    • (1990) EMBO J , vol.9 , pp. 663-673
    • White, C.I.1    Haber, J.E.2
  • 34
    • 0042626553 scopus 로고    scopus 로고
    • Recruitment of the recombinational repair machinery to a DNA double-strand break in yeast
    • Wolner, B., S. van Komen, P. Sung, and C. L. Peterson, 2003 Recruitment of the recombinational repair machinery to a DNA double-strand break in yeast. Mol. Cell 12: 221-232.
    • (2003) Mol. Cell , vol.12 , pp. 221-232
    • Wolner, B.1    van Komen, S.2    Sung, P.3    Peterson, C.L.4
  • 35
    • 2642624622 scopus 로고    scopus 로고
    • Mcm1 regulates donor preference controlled by the recombination enhancer in Saccharomyces mating-type switching
    • Wu, C., K. Weiss, C. Yang, M. A. Harris, B. K. Tye et al., 1998 Mcm1 regulates donor preference controlled by the recombination enhancer in Saccharomyces mating-type switching. Genes Dev. 12: 1726-1737.
    • (1998) Genes Dev , vol.12 , pp. 1726-1737
    • Wu, C.1    Weiss, K.2    Yang, C.3    Harris, M.A.4    Tye, B.K.5
  • 36
    • 0029146302 scopus 로고
    • MATa donor preference in yeast mating-type switching: Activation of a large chromosomal region for recombination
    • Wu, X., and J. E. Haber, 1995 MATa donor preference in yeast mating-type switching: activation of a large chromosomal region for recombination. Genes Dev. 9: 1922-1932.
    • (1995) Genes Dev , vol.9 , pp. 1922-1932
    • Wu, X.1    Haber, J.E.2
  • 37
    • 0030592510 scopus 로고    scopus 로고
    • A 700 bp cis-acting region controls mating-type dependent recombination along the entire left arm of yeast chromosome III
    • Wu, X., and J. E. Haber, 1996 A 700 bp cis-acting region controls mating-type dependent recombination along the entire left arm of yeast chromosome III. Cell 87: 277-285.
    • (1996) Cell , vol.87 , pp. 277-285
    • Wu, X.1    Haber, J.E.2
  • 38
    • 0030800629 scopus 로고    scopus 로고
    • Rules of donor preference in Saccharomyces mating-type gene switching revealed by a competition assay involving two types of recombination
    • Wu, X., C. Wu, and J. E. Haber, 1997 Rules of donor preference in Saccharomyces mating-type gene switching revealed by a competition assay involving two types of recombination. Genetics 147: 399-407.
    • (1997) Genetics , vol.147 , pp. 399-407
    • Wu, X.1    Wu, C.2    Haber, J.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.