Sequence-specific Mg2+-DNA interactions: A molecular dynamics simulation study

Journal of Physical Chemistry B

Volumn 115, Issue 49, 2011, Pages 14713-14720

  Li, Weifeng ^a,b   Nordenskiöld, Lars ^b   Mu, Yuguang ^b  

^a NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

^b NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMATIONS; DNA; DYNAMICS; HYDRATION; HYDROGEN BONDS; IONS; MOLECULES;

AMINO GROUP; CONFORMATIONAL DYNAMICS; CONFORMATIONAL ENTROPY; DNA DUPLEXES; DNA INTERACTION; DNA MOLECULES; DNA STRUCTURE; HYDRATION SHELL; HYDROGEN BOND ACCEPTORS; HYDROGEN BOND INTERACTION; LOCAL BENDING; LOCAL ENVIRONMENTS; MOLECULAR DYNAMICS SIMULATIONS; NEGATIVE POTENTIAL; PHOSPHATE BACKBONE; POSITIVELY CHARGED; SEQUENCE-DEPENDENT; SIX WATER MOLECULES; STERIC CONSTRAINT;

MOLECULAR DYNAMICS;

DNA; GUANINE; ION; MAGNESIUM;

ARTICLE; CHEMISTRY; ENTROPY; HYDROGEN BOND; METABOLISM; MOLECULAR DYNAMICS; NUCLEOTIDE SEQUENCE; PRINCIPAL COMPONENT ANALYSIS; STATIC ELECTRICITY;

BASE SEQUENCE; DNA; ENTROPY; GUANINE; HYDROGEN BONDING; IONS; MAGNESIUM; MOLECULAR DYNAMICS SIMULATION; PRINCIPAL COMPONENT ANALYSIS; STATIC ELECTRICITY;

EID: 83455195615     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp2052568     Document Type: Article

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